co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G66140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006182: cGMP biosynthetic process	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0080053: response to phenylalanine	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0080052: response to histidine	0.00E+00
6	GO:0006099: tricarboxylic acid cycle	3.88E-10
7	GO:0006102: isocitrate metabolic process	4.22E-10
8	GO:0034976: response to endoplasmic reticulum stress	4.46E-08
9	GO:0046686: response to cadmium ion	5.39E-08
10	GO:0006979: response to oxidative stress	3.14E-07
11	GO:0006101: citrate metabolic process	3.59E-06
12	GO:0030968: endoplasmic reticulum unfolded protein response	9.58E-06
13	GO:0045454: cell redox homeostasis	3.11E-05
14	GO:0006097: glyoxylate cycle	8.25E-05
15	GO:0009697: salicylic acid biosynthetic process	8.25E-05
16	GO:0006457: protein folding	1.08E-04
17	GO:0006014: D-ribose metabolic process	1.20E-04
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.64E-04
19	GO:0010150: leaf senescence	2.20E-04
20	GO:0030091: protein repair	2.73E-04
21	GO:0035266: meristem growth	2.80E-04
22	GO:0007292: female gamete generation	2.80E-04
23	GO:1990641: response to iron ion starvation	2.80E-04
24	GO:0009700: indole phytoalexin biosynthetic process	2.80E-04
25	GO:0043687: post-translational protein modification	2.80E-04
26	GO:0019673: GDP-mannose metabolic process	2.80E-04
27	GO:0046244: salicylic acid catabolic process	2.80E-04
28	GO:0009617: response to bacterium	3.09E-04
29	GO:0000302: response to reactive oxygen species	3.40E-04
30	GO:0042742: defense response to bacterium	3.67E-04
31	GO:0051262: protein tetramerization	6.14E-04
32	GO:0051788: response to misfolded protein	6.14E-04
33	GO:0042939: tripeptide transport	6.14E-04
34	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	6.14E-04
35	GO:0009737: response to abscisic acid	7.75E-04
36	GO:0006499: N-terminal protein myristoylation	8.70E-04
37	GO:0060968: regulation of gene silencing	9.96E-04
38	GO:0032940: secretion by cell	9.96E-04
39	GO:0002230: positive regulation of defense response to virus by host	9.96E-04
40	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	9.96E-04
41	GO:0090351: seedling development	1.05E-03
42	GO:0010053: root epidermal cell differentiation	1.05E-03
43	GO:0000162: tryptophan biosynthetic process	1.16E-03
44	GO:0009751: response to salicylic acid	1.41E-03
45	GO:0001676: long-chain fatty acid metabolic process	1.42E-03
46	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.42E-03
47	GO:0002239: response to oomycetes	1.42E-03
48	GO:0072334: UDP-galactose transmembrane transport	1.42E-03
49	GO:0033014: tetrapyrrole biosynthetic process	1.42E-03
50	GO:1902290: positive regulation of defense response to oomycetes	1.42E-03
51	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.47E-03
52	GO:0031348: negative regulation of defense response	1.70E-03
53	GO:0030433: ubiquitin-dependent ERAD pathway	1.70E-03
54	GO:0009625: response to insect	1.86E-03
55	GO:0042938: dipeptide transport	1.91E-03
56	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.91E-03
57	GO:0070534: protein K63-linked ubiquitination	1.91E-03
58	GO:0046345: abscisic acid catabolic process	1.91E-03
59	GO:0006511: ubiquitin-dependent protein catabolic process	1.92E-03
60	GO:0005513: detection of calcium ion	2.43E-03
61	GO:0045116: protein neddylation	2.43E-03
62	GO:0006465: signal peptide processing	2.43E-03
63	GO:0000304: response to singlet oxygen	2.43E-03
64	GO:2000762: regulation of phenylpropanoid metabolic process	2.43E-03
65	GO:0018279: protein N-linked glycosylation via asparagine	2.43E-03
66	GO:0009651: response to salt stress	2.50E-03
67	GO:0019252: starch biosynthetic process	2.93E-03
68	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.00E-03
69	GO:0010405: arabinogalactan protein metabolic process	3.00E-03
70	GO:0006301: postreplication repair	3.00E-03
71	GO:0048827: phyllome development	3.00E-03
72	GO:0048232: male gamete generation	3.00E-03
73	GO:0043248: proteasome assembly	3.00E-03
74	GO:0042176: regulation of protein catabolic process	3.00E-03
75	GO:0047484: regulation of response to osmotic stress	3.00E-03
76	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.00E-03
77	GO:0009553: embryo sac development	3.12E-03
78	GO:0010193: response to ozone	3.14E-03
79	GO:0010200: response to chitin	3.54E-03
80	GO:0015977: carbon fixation	3.62E-03
81	GO:0042372: phylloquinone biosynthetic process	3.62E-03
82	GO:0009612: response to mechanical stimulus	3.62E-03
83	GO:0006468: protein phosphorylation	3.78E-03
84	GO:1902074: response to salt	4.26E-03
85	GO:1900056: negative regulation of leaf senescence	4.26E-03
86	GO:0042773: ATP synthesis coupled electron transport	4.26E-03
87	GO:1900057: positive regulation of leaf senescence	4.26E-03
88	GO:0009816: defense response to bacterium, incompatible interaction	4.79E-03
89	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	4.95E-03
90	GO:0009819: drought recovery	4.95E-03
91	GO:0030162: regulation of proteolysis	4.95E-03
92	GO:0006605: protein targeting	4.95E-03
93	GO:0010078: maintenance of root meristem identity	4.95E-03
94	GO:0016311: dephosphorylation	5.62E-03
95	GO:0043562: cellular response to nitrogen levels	5.67E-03
96	GO:0010120: camalexin biosynthetic process	5.67E-03
97	GO:0009657: plastid organization	5.67E-03
98	GO:0008219: cell death	5.91E-03
99	GO:0015780: nucleotide-sugar transport	6.43E-03
100	GO:0046685: response to arsenic-containing substance	6.43E-03
101	GO:0006783: heme biosynthetic process	6.43E-03
102	GO:0010112: regulation of systemic acquired resistance	6.43E-03
103	GO:0009407: toxin catabolic process	6.51E-03
104	GO:0015031: protein transport	6.77E-03
105	GO:0010043: response to zinc ion	6.83E-03
106	GO:1900426: positive regulation of defense response to bacterium	7.22E-03
107	GO:0010205: photoinhibition	7.22E-03
108	GO:0043067: regulation of programmed cell death	7.22E-03
109	GO:0030042: actin filament depolymerization	7.22E-03
110	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.22E-03
111	GO:0045087: innate immune response	7.49E-03
112	GO:0009688: abscisic acid biosynthetic process	8.04E-03
113	GO:0048829: root cap development	8.04E-03
114	GO:0007064: mitotic sister chromatid cohesion	8.04E-03
115	GO:0000103: sulfate assimilation	8.04E-03
116	GO:0010015: root morphogenesis	8.90E-03
117	GO:0006952: defense response	8.92E-03
118	GO:0042542: response to hydrogen peroxide	9.29E-03
119	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	9.79E-03
120	GO:0006790: sulfur compound metabolic process	9.79E-03
121	GO:0045037: protein import into chloroplast stroma	9.79E-03
122	GO:0009644: response to high light intensity	1.05E-02
123	GO:0010075: regulation of meristem growth	1.07E-02
124	GO:0009636: response to toxic substance	1.09E-02
125	GO:0009965: leaf morphogenesis	1.09E-02
126	GO:0009266: response to temperature stimulus	1.17E-02
127	GO:0009934: regulation of meristem structural organization	1.17E-02
128	GO:0002237: response to molecule of bacterial origin	1.17E-02
129	GO:0009933: meristem structural organization	1.17E-02
130	GO:0009846: pollen germination	1.22E-02
131	GO:0046854: phosphatidylinositol phosphorylation	1.26E-02
132	GO:0010039: response to iron ion	1.26E-02
133	GO:0006486: protein glycosylation	1.31E-02
134	GO:0009555: pollen development	1.45E-02
135	GO:2000377: regulation of reactive oxygen species metabolic process	1.47E-02
136	GO:0006487: protein N-linked glycosylation	1.47E-02
137	GO:0009863: salicylic acid mediated signaling pathway	1.47E-02
138	GO:0007010: cytoskeleton organization	1.47E-02
139	GO:0006096: glycolytic process	1.55E-02
140	GO:0016998: cell wall macromolecule catabolic process	1.68E-02
141	GO:0009620: response to fungus	1.70E-02
142	GO:0071456: cellular response to hypoxia	1.80E-02
143	GO:0019748: secondary metabolic process	1.80E-02
144	GO:0009814: defense response, incompatible interaction	1.80E-02
145	GO:0016226: iron-sulfur cluster assembly	1.80E-02
146	GO:0007131: reciprocal meiotic recombination	1.80E-02
147	GO:0006012: galactose metabolic process	1.91E-02
148	GO:0009411: response to UV	1.91E-02
149	GO:0006886: intracellular protein transport	1.95E-02
150	GO:0009306: protein secretion	2.03E-02
151	GO:0010584: pollen exine formation	2.03E-02
152	GO:0019722: calcium-mediated signaling	2.03E-02
153	GO:0016117: carotenoid biosynthetic process	2.15E-02
154	GO:0042147: retrograde transport, endosome to Golgi	2.15E-02
155	GO:0008033: tRNA processing	2.27E-02
156	GO:0009409: response to cold	2.27E-02
157	GO:0010118: stomatal movement	2.27E-02
158	GO:0042631: cellular response to water deprivation	2.27E-02
159	GO:0032259: methylation	2.31E-02
160	GO:0010197: polar nucleus fusion	2.39E-02
161	GO:0048868: pollen tube development	2.39E-02
162	GO:0006662: glycerol ether metabolic process	2.39E-02
163	GO:0009646: response to absence of light	2.52E-02
164	GO:0055114: oxidation-reduction process	2.56E-02
165	GO:0009851: auxin biosynthetic process	2.65E-02
166	GO:0009790: embryo development	2.73E-02
167	GO:0002229: defense response to oomycetes	2.78E-02
168	GO:0006891: intra-Golgi vesicle-mediated transport	2.78E-02
169	GO:0030163: protein catabolic process	3.05E-02
170	GO:0009567: double fertilization forming a zygote and endosperm	3.19E-02
171	GO:0010252: auxin homeostasis	3.19E-02
172	GO:0007166: cell surface receptor signaling pathway	3.68E-02
173	GO:0009607: response to biotic stimulus	3.76E-02
174	GO:0009627: systemic acquired resistance	3.91E-02
175	GO:0009414: response to water deprivation	3.96E-02
176	GO:0015995: chlorophyll biosynthetic process	4.06E-02
177	GO:0009817: defense response to fungus, incompatible interaction	4.37E-02
178	GO:0009735: response to cytokinin	4.43E-02
179	GO:0048767: root hair elongation	4.52E-02
180	GO:0010311: lateral root formation	4.52E-02
181	GO:0007568: aging	4.84E-02
182	GO:0048527: lateral root development	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
4	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
5	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.21E-07
6	GO:0003994: aconitate hydratase activity	3.59E-06
7	GO:0003756: protein disulfide isomerase activity	8.80E-06
8	GO:0005460: UDP-glucose transmembrane transporter activity	2.89E-05
9	GO:0005509: calcium ion binding	6.71E-05
10	GO:0005459: UDP-galactose transmembrane transporter activity	8.25E-05
11	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	8.25E-05
12	GO:0004298: threonine-type endopeptidase activity	1.26E-04
13	GO:0016301: kinase activity	1.29E-04
14	GO:0008233: peptidase activity	1.32E-04
15	GO:0051539: 4 iron, 4 sulfur cluster binding	1.53E-04
16	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.64E-04
17	GO:0004747: ribokinase activity	1.64E-04
18	GO:0008320: protein transmembrane transporter activity	2.16E-04
19	GO:0008865: fructokinase activity	2.73E-04
20	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.80E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.80E-04
22	GO:0008446: GDP-mannose 4,6-dehydratase activity	2.80E-04
23	GO:0004048: anthranilate phosphoribosyltransferase activity	2.80E-04
24	GO:0008909: isochorismate synthase activity	2.80E-04
25	GO:0004325: ferrochelatase activity	2.80E-04
26	GO:0005524: ATP binding	4.12E-04
27	GO:0030955: potassium ion binding	4.79E-04
28	GO:0004743: pyruvate kinase activity	4.79E-04
29	GO:0004776: succinate-CoA ligase (GDP-forming) activity	6.14E-04
30	GO:0019781: NEDD8 activating enzyme activity	6.14E-04
31	GO:0004775: succinate-CoA ligase (ADP-forming) activity	6.14E-04
32	GO:0042937: tripeptide transporter activity	6.14E-04
33	GO:0004383: guanylate cyclase activity	9.96E-04
34	GO:0000030: mannosyltransferase activity	9.96E-04
35	GO:0008430: selenium binding	9.96E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	9.96E-04
37	GO:0008964: phosphoenolpyruvate carboxylase activity	9.96E-04
38	GO:0004674: protein serine/threonine kinase activity	1.01E-03
39	GO:0031176: endo-1,4-beta-xylanase activity	1.42E-03
40	GO:0051537: 2 iron, 2 sulfur cluster binding	1.56E-03
41	GO:0009916: alternative oxidase activity	1.91E-03
42	GO:0042936: dipeptide transporter activity	1.91E-03
43	GO:0004031: aldehyde oxidase activity	1.91E-03
44	GO:0050302: indole-3-acetaldehyde oxidase activity	1.91E-03
45	GO:0004576: oligosaccharyl transferase activity	1.91E-03
46	GO:0005496: steroid binding	2.43E-03
47	GO:0010294: abscisic acid glucosyltransferase activity	2.43E-03
48	GO:0008641: small protein activating enzyme activity	2.43E-03
49	GO:0010181: FMN binding	2.73E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.00E-03
51	GO:0036402: proteasome-activating ATPase activity	3.00E-03
52	GO:0051082: unfolded protein binding	3.24E-03
53	GO:0015035: protein disulfide oxidoreductase activity	3.36E-03
54	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.62E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.62E-03
56	GO:0102391: decanoate--CoA ligase activity	3.62E-03
57	GO:0003978: UDP-glucose 4-epimerase activity	3.62E-03
58	GO:0004656: procollagen-proline 4-dioxygenase activity	3.62E-03
59	GO:0004467: long-chain fatty acid-CoA ligase activity	4.26E-03
60	GO:0030247: polysaccharide binding	5.33E-03
61	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.62E-03
62	GO:0045309: protein phosphorylated amino acid binding	7.22E-03
63	GO:0005507: copper ion binding	7.36E-03
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.49E-03
65	GO:0030234: enzyme regulator activity	8.04E-03
66	GO:0008171: O-methyltransferase activity	8.04E-03
67	GO:0004129: cytochrome-c oxidase activity	8.90E-03
68	GO:0019904: protein domain specific binding	8.90E-03
69	GO:0008794: arsenate reductase (glutaredoxin) activity	8.90E-03
70	GO:0004364: glutathione transferase activity	9.29E-03
71	GO:0008378: galactosyltransferase activity	9.79E-03
72	GO:0015114: phosphate ion transmembrane transporter activity	1.07E-02
73	GO:0000287: magnesium ion binding	1.11E-02
74	GO:0004190: aspartic-type endopeptidase activity	1.26E-02
75	GO:0017025: TBP-class protein binding	1.26E-02
76	GO:0003712: transcription cofactor activity	1.26E-02
77	GO:0031625: ubiquitin protein ligase binding	1.45E-02
78	GO:0051536: iron-sulfur cluster binding	1.47E-02
79	GO:0031418: L-ascorbic acid binding	1.47E-02
80	GO:0003954: NADH dehydrogenase activity	1.47E-02
81	GO:0061630: ubiquitin protein ligase activity	1.59E-02
82	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.70E-02
83	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.70E-02
84	GO:0047134: protein-disulfide reductase activity	2.15E-02
85	GO:0016758: transferase activity, transferring hexosyl groups	2.27E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	2.52E-02
87	GO:0016853: isomerase activity	2.52E-02
88	GO:0009055: electron carrier activity	2.66E-02
89	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.78E-02
90	GO:0008565: protein transporter activity	2.80E-02
91	GO:0005525: GTP binding	3.03E-02
92	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-02
93	GO:0005200: structural constituent of cytoskeleton	3.33E-02
94	GO:0008194: UDP-glycosyltransferase activity	3.61E-02
95	GO:0051213: dioxygenase activity	3.62E-02
96	GO:0004683: calmodulin-dependent protein kinase activity	4.06E-02
97	GO:0004806: triglyceride lipase activity	4.06E-02
98	GO:0016887: ATPase activity	4.19E-02
99	GO:0015238: drug transmembrane transporter activity	4.52E-02
100	GO:0008168: methyltransferase activity	4.78E-02
101	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0046862: chromoplast membrane	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0005783: endoplasmic reticulum	1.47E-12
4	GO:0005788: endoplasmic reticulum lumen	2.10E-09
5	GO:0005829: cytosol	1.54E-07
6	GO:0005886: plasma membrane	4.32E-07
7	GO:0030134: ER to Golgi transport vesicle	3.59E-06
8	GO:0000502: proteasome complex	3.17E-05
9	GO:0008250: oligosaccharyltransferase complex	8.25E-05
10	GO:0005774: vacuolar membrane	1.05E-04
11	GO:0005839: proteasome core complex	1.26E-04
12	GO:0016021: integral component of membrane	2.51E-04
13	GO:0005787: signal peptidase complex	2.80E-04
14	GO:0045252: oxoglutarate dehydrogenase complex	2.80E-04
15	GO:0005789: endoplasmic reticulum membrane	3.17E-04
16	GO:0019773: proteasome core complex, alpha-subunit complex	3.35E-04
17	GO:0046861: glyoxysomal membrane	9.96E-04
18	GO:0030176: integral component of endoplasmic reticulum membrane	1.05E-03
19	GO:0031372: UBC13-MMS2 complex	1.91E-03
20	GO:0030660: Golgi-associated vesicle membrane	1.91E-03
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.91E-03
22	GO:0009507: chloroplast	1.99E-03
23	GO:0005794: Golgi apparatus	2.13E-03
24	GO:0016020: membrane	2.28E-03
25	GO:0005746: mitochondrial respiratory chain	2.43E-03
26	GO:0032588: trans-Golgi network membrane	3.00E-03
27	GO:0031597: cytosolic proteasome complex	3.62E-03
28	GO:0030173: integral component of Golgi membrane	3.62E-03
29	GO:0005801: cis-Golgi network	3.62E-03
30	GO:0031595: nuclear proteasome complex	4.26E-03
31	GO:0005623: cell	4.46E-03
32	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	4.95E-03
33	GO:0000326: protein storage vacuole	5.67E-03
34	GO:0009514: glyoxysome	5.67E-03
35	GO:0031901: early endosome membrane	6.43E-03
36	GO:0031090: organelle membrane	6.43E-03
37	GO:0008540: proteasome regulatory particle, base subcomplex	7.22E-03
38	GO:0005773: vacuole	7.99E-03
39	GO:0005740: mitochondrial envelope	8.04E-03
40	GO:0005765: lysosomal membrane	8.90E-03
41	GO:0008541: proteasome regulatory particle, lid subcomplex	8.90E-03
42	GO:0005758: mitochondrial intermembrane space	1.47E-02
43	GO:0031969: chloroplast membrane	1.49E-02
44	GO:0045271: respiratory chain complex I	1.58E-02
45	GO:0070469: respiratory chain	1.58E-02
46	GO:0005741: mitochondrial outer membrane	1.68E-02
47	GO:0009506: plasmodesma	1.72E-02
48	GO:0015629: actin cytoskeleton	1.91E-02
49	GO:0009536: plastid	1.92E-02
50	GO:0005737: cytoplasm	2.72E-02
51	GO:0016592: mediator complex	2.91E-02
52	GO:0032580: Golgi cisterna membrane	3.19E-02
53	GO:0005778: peroxisomal membrane	3.33E-02
54	GO:0005739: mitochondrion	3.81E-02
55	GO:0019005: SCF ubiquitin ligase complex	4.37E-02