Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G65890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0042493: response to drug0.00E+00
6GO:0002184: cytoplasmic translational termination0.00E+00
7GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0032544: plastid translation9.40E-07
10GO:0015995: chlorophyll biosynthetic process2.13E-06
11GO:0010206: photosystem II repair6.01E-05
12GO:0080170: hydrogen peroxide transmembrane transport8.72E-05
13GO:0006546: glycine catabolic process1.51E-04
14GO:0010027: thylakoid membrane organization2.54E-04
15GO:0010411: xyloglucan metabolic process3.33E-04
16GO:0043266: regulation of potassium ion transport5.26E-04
17GO:0071370: cellular response to gibberellin stimulus5.26E-04
18GO:0010480: microsporocyte differentiation5.26E-04
19GO:0006824: cobalt ion transport5.26E-04
20GO:0000481: maturation of 5S rRNA5.26E-04
21GO:0042547: cell wall modification involved in multidimensional cell growth5.26E-04
22GO:2000021: regulation of ion homeostasis5.26E-04
23GO:0034337: RNA folding5.26E-04
24GO:0071588: hydrogen peroxide mediated signaling pathway5.26E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.26E-04
26GO:0000476: maturation of 4.5S rRNA5.26E-04
27GO:0000967: rRNA 5'-end processing5.26E-04
28GO:0009658: chloroplast organization6.65E-04
29GO:0042254: ribosome biogenesis6.90E-04
30GO:0034220: ion transmembrane transport7.80E-04
31GO:0010541: acropetal auxin transport1.13E-03
32GO:0034755: iron ion transmembrane transport1.13E-03
33GO:0010270: photosystem II oxygen evolving complex assembly1.13E-03
34GO:0034470: ncRNA processing1.13E-03
35GO:0010275: NAD(P)H dehydrogenase complex assembly1.13E-03
36GO:0006415: translational termination1.60E-03
37GO:0006816: calcium ion transport1.60E-03
38GO:0006508: proteolysis1.78E-03
39GO:0009735: response to cytokinin1.80E-03
40GO:0016024: CDP-diacylglycerol biosynthetic process1.83E-03
41GO:0006518: peptide metabolic process1.85E-03
42GO:0010160: formation of animal organ boundary1.85E-03
43GO:0045493: xylan catabolic process1.85E-03
44GO:2001295: malonyl-CoA biosynthetic process1.85E-03
45GO:0009767: photosynthetic electron transport chain2.08E-03
46GO:0010143: cutin biosynthetic process2.35E-03
47GO:0010731: protein glutathionylation2.69E-03
48GO:0006424: glutamyl-tRNA aminoacylation2.69E-03
49GO:1901332: negative regulation of lateral root development2.69E-03
50GO:0043572: plastid fission2.69E-03
51GO:0016556: mRNA modification2.69E-03
52GO:0055070: copper ion homeostasis2.69E-03
53GO:0046836: glycolipid transport2.69E-03
54GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.69E-03
55GO:0007231: osmosensory signaling pathway2.69E-03
56GO:0051639: actin filament network formation2.69E-03
57GO:0009152: purine ribonucleotide biosynthetic process2.69E-03
58GO:0046653: tetrahydrofolate metabolic process2.69E-03
59GO:0034059: response to anoxia2.69E-03
60GO:0009650: UV protection2.69E-03
61GO:0009226: nucleotide-sugar biosynthetic process2.69E-03
62GO:0043481: anthocyanin accumulation in tissues in response to UV light2.69E-03
63GO:0006833: water transport2.94E-03
64GO:0006810: transport3.51E-03
65GO:0010021: amylopectin biosynthetic process3.62E-03
66GO:0010037: response to carbon dioxide3.62E-03
67GO:0015976: carbon utilization3.62E-03
68GO:0051764: actin crosslink formation3.62E-03
69GO:0019464: glycine decarboxylation via glycine cleavage system3.62E-03
70GO:0006085: acetyl-CoA biosynthetic process3.62E-03
71GO:2000122: negative regulation of stomatal complex development3.62E-03
72GO:0045727: positive regulation of translation3.62E-03
73GO:0030104: water homeostasis3.62E-03
74GO:0033500: carbohydrate homeostasis3.62E-03
75GO:0031122: cytoplasmic microtubule organization3.62E-03
76GO:0006412: translation4.13E-03
77GO:0006633: fatty acid biosynthetic process4.56E-03
78GO:0032543: mitochondrial translation4.65E-03
79GO:0035434: copper ion transmembrane transport4.65E-03
80GO:0016123: xanthophyll biosynthetic process4.65E-03
81GO:0000304: response to singlet oxygen4.65E-03
82GO:0009247: glycolipid biosynthetic process4.65E-03
83GO:0015979: photosynthesis4.89E-03
84GO:0042546: cell wall biogenesis4.95E-03
85GO:0045490: pectin catabolic process5.27E-03
86GO:0006828: manganese ion transport5.76E-03
87GO:0032973: amino acid export5.76E-03
88GO:0018258: protein O-linked glycosylation via hydroxyproline5.76E-03
89GO:0000741: karyogamy5.76E-03
90GO:0010405: arabinogalactan protein metabolic process5.76E-03
91GO:0006751: glutathione catabolic process5.76E-03
92GO:0042549: photosystem II stabilization5.76E-03
93GO:0010256: endomembrane system organization5.76E-03
94GO:0006655: phosphatidylglycerol biosynthetic process5.76E-03
95GO:0060918: auxin transport5.76E-03
96GO:0010190: cytochrome b6f complex assembly5.76E-03
97GO:0000413: protein peptidyl-prolyl isomerization6.04E-03
98GO:0006458: 'de novo' protein folding6.95E-03
99GO:0042026: protein refolding6.95E-03
100GO:0006694: steroid biosynthetic process6.95E-03
101GO:0048280: vesicle fusion with Golgi apparatus6.95E-03
102GO:0010019: chloroplast-nucleus signaling pathway6.95E-03
103GO:0009612: response to mechanical stimulus6.95E-03
104GO:0000302: response to reactive oxygen species8.07E-03
105GO:0071554: cell wall organization or biogenesis8.07E-03
106GO:0048437: floral organ development8.23E-03
107GO:0010196: nonphotochemical quenching8.23E-03
108GO:0009645: response to low light intensity stimulus8.23E-03
109GO:0010047: fruit dehiscence8.23E-03
110GO:0043090: amino acid import8.23E-03
111GO:0008152: metabolic process9.10E-03
112GO:0019375: galactolipid biosynthetic process9.58E-03
113GO:0032508: DNA duplex unwinding9.58E-03
114GO:0045010: actin nucleation9.58E-03
115GO:0005975: carbohydrate metabolic process9.81E-03
116GO:0009657: plastid organization1.10E-02
117GO:0006526: arginine biosynthetic process1.10E-02
118GO:0009808: lignin metabolic process1.10E-02
119GO:0000373: Group II intron splicing1.25E-02
120GO:0009051: pentose-phosphate shunt, oxidative branch1.25E-02
121GO:0090305: nucleic acid phosphodiester bond hydrolysis1.25E-02
122GO:0080144: amino acid homeostasis1.25E-02
123GO:0006098: pentose-phosphate shunt1.25E-02
124GO:0042128: nitrate assimilation1.31E-02
125GO:0006779: porphyrin-containing compound biosynthetic process1.41E-02
126GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.50E-02
127GO:0009817: defense response to fungus, incompatible interaction1.53E-02
128GO:0006896: Golgi to vacuole transport1.57E-02
129GO:0006782: protoporphyrinogen IX biosynthetic process1.57E-02
130GO:0019538: protein metabolic process1.57E-02
131GO:0043069: negative regulation of programmed cell death1.57E-02
132GO:0009834: plant-type secondary cell wall biogenesis1.69E-02
133GO:0009407: toxin catabolic process1.69E-02
134GO:0009773: photosynthetic electron transport in photosystem I1.74E-02
135GO:0018119: peptidyl-cysteine S-nitrosylation1.74E-02
136GO:0048229: gametophyte development1.74E-02
137GO:0009684: indoleacetic acid biosynthetic process1.74E-02
138GO:0009790: embryo development1.76E-02
139GO:0008361: regulation of cell size1.92E-02
140GO:0007165: signal transduction2.02E-02
141GO:0034599: cellular response to oxidative stress2.04E-02
142GO:0006006: glucose metabolic process2.10E-02
143GO:0030036: actin cytoskeleton organization2.10E-02
144GO:0009718: anthocyanin-containing compound biosynthetic process2.10E-02
145GO:0010075: regulation of meristem growth2.10E-02
146GO:0006094: gluconeogenesis2.10E-02
147GO:0030048: actin filament-based movement2.10E-02
148GO:0030001: metal ion transport2.22E-02
149GO:0010020: chloroplast fission2.29E-02
150GO:0010540: basipetal auxin transport2.29E-02
151GO:0009934: regulation of meristem structural organization2.29E-02
152GO:0006631: fatty acid metabolic process2.32E-02
153GO:0005985: sucrose metabolic process2.49E-02
154GO:0010030: positive regulation of seed germination2.49E-02
155GO:0070588: calcium ion transmembrane transport2.49E-02
156GO:0009636: response to toxic substance2.83E-02
157GO:0000027: ribosomal large subunit assembly2.89E-02
158GO:0051017: actin filament bundle assembly2.89E-02
159GO:0005992: trehalose biosynthetic process2.89E-02
160GO:0055085: transmembrane transport3.09E-02
161GO:0007017: microtubule-based process3.10E-02
162GO:0006418: tRNA aminoacylation for protein translation3.10E-02
163GO:0009664: plant-type cell wall organization3.16E-02
164GO:0061077: chaperone-mediated protein folding3.32E-02
165GO:0031408: oxylipin biosynthetic process3.32E-02
166GO:0009814: defense response, incompatible interaction3.54E-02
167GO:0009826: unidimensional cell growth3.57E-02
168GO:0006857: oligopeptide transport3.63E-02
169GO:0009411: response to UV3.77E-02
170GO:0006012: galactose metabolic process3.77E-02
171GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.77E-02
172GO:0009306: protein secretion4.00E-02
173GO:0048443: stamen development4.00E-02
174GO:0042147: retrograde transport, endosome to Golgi4.23E-02
175GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.23E-02
176GO:0080022: primary root development4.47E-02
177GO:0042335: cuticle development4.47E-02
178GO:0048653: anther development4.47E-02
179GO:0042631: cellular response to water deprivation4.47E-02
180GO:0042545: cell wall modification4.67E-02
181GO:0010197: polar nucleus fusion4.72E-02
182GO:0009958: positive gravitropism4.72E-02
183GO:0006520: cellular amino acid metabolic process4.72E-02
184GO:0006814: sodium ion transport4.97E-02
RankGO TermAdjusted P value
1GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
2GO:0004822: isoleucine-tRNA ligase activity0.00E+00
3GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
4GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
5GO:0050614: delta24-sterol reductase activity0.00E+00
6GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
7GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0043864: indoleacetamide hydrolase activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0019843: rRNA binding3.71E-10
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.96E-05
13GO:0005528: FK506 binding2.29E-05
14GO:0016149: translation release factor activity, codon specific8.72E-05
15GO:0016851: magnesium chelatase activity8.72E-05
16GO:0004130: cytochrome-c peroxidase activity3.24E-04
17GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.24E-04
18GO:0008200: ion channel inhibitor activity3.24E-04
19GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.23E-04
20GO:0051920: peroxiredoxin activity4.33E-04
21GO:0080132: fatty acid alpha-hydroxylase activity5.26E-04
22GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.26E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.26E-04
24GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.26E-04
25GO:0004856: xylulokinase activity5.26E-04
26GO:0008568: microtubule-severing ATPase activity5.26E-04
27GO:0016788: hydrolase activity, acting on ester bonds6.90E-04
28GO:0004033: aldo-keto reductase (NADP) activity6.91E-04
29GO:0016209: antioxidant activity6.91E-04
30GO:0003747: translation release factor activity1.01E-03
31GO:0016762: xyloglucan:xyloglucosyl transferase activity1.12E-03
32GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.13E-03
33GO:0016868: intramolecular transferase activity, phosphotransferases1.13E-03
34GO:0003839: gamma-glutamylcyclotransferase activity1.13E-03
35GO:0004047: aminomethyltransferase activity1.13E-03
36GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.13E-03
37GO:0033201: alpha-1,4-glucan synthase activity1.13E-03
38GO:0003735: structural constituent of ribosome1.19E-03
39GO:0015250: water channel activity1.78E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.85E-03
41GO:0002161: aminoacyl-tRNA editing activity1.85E-03
42GO:0004075: biotin carboxylase activity1.85E-03
43GO:0045174: glutathione dehydrogenase (ascorbate) activity1.85E-03
44GO:0030267: glyoxylate reductase (NADP) activity1.85E-03
45GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.85E-03
46GO:0008864: formyltetrahydrofolate deformylase activity1.85E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.85E-03
48GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.85E-03
49GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.85E-03
50GO:0016531: copper chaperone activity1.85E-03
51GO:0070330: aromatase activity1.85E-03
52GO:0004373: glycogen (starch) synthase activity1.85E-03
53GO:0019829: cation-transporting ATPase activity1.85E-03
54GO:0004565: beta-galactosidase activity2.08E-03
55GO:0016798: hydrolase activity, acting on glycosyl bonds2.20E-03
56GO:0008236: serine-type peptidase activity2.35E-03
57GO:0043023: ribosomal large subunit binding2.69E-03
58GO:0008508: bile acid:sodium symporter activity2.69E-03
59GO:0001872: (1->3)-beta-D-glucan binding2.69E-03
60GO:0017089: glycolipid transporter activity2.69E-03
61GO:0003878: ATP citrate synthase activity2.69E-03
62GO:0004375: glycine dehydrogenase (decarboxylating) activity2.69E-03
63GO:0035250: UDP-galactosyltransferase activity2.69E-03
64GO:0004222: metalloendopeptidase activity2.84E-03
65GO:0046556: alpha-L-arabinofuranosidase activity3.62E-03
66GO:0004345: glucose-6-phosphate dehydrogenase activity3.62E-03
67GO:0016836: hydro-lyase activity3.62E-03
68GO:0051861: glycolipid binding3.62E-03
69GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.62E-03
70GO:0004045: aminoacyl-tRNA hydrolase activity3.62E-03
71GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.62E-03
72GO:0009011: starch synthase activity3.62E-03
73GO:0009044: xylan 1,4-beta-xylosidase activity3.62E-03
74GO:0004176: ATP-dependent peptidase activity3.96E-03
75GO:0004364: glutathione transferase activity4.47E-03
76GO:0018685: alkane 1-monooxygenase activity4.65E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor4.65E-03
78GO:0004040: amidase activity4.65E-03
79GO:0003989: acetyl-CoA carboxylase activity4.65E-03
80GO:0030570: pectate lyase activity4.73E-03
81GO:0016688: L-ascorbate peroxidase activity5.76E-03
82GO:0042578: phosphoric ester hydrolase activity5.76E-03
83GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.76E-03
84GO:0080030: methyl indole-3-acetate esterase activity5.76E-03
85GO:1990714: hydroxyproline O-galactosyltransferase activity5.76E-03
86GO:0004332: fructose-bisphosphate aldolase activity5.76E-03
87GO:0015631: tubulin binding6.95E-03
88GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.95E-03
89GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.95E-03
90GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.95E-03
91GO:0043295: glutathione binding8.23E-03
92GO:0004564: beta-fructofuranosidase activity9.58E-03
93GO:0004034: aldose 1-epimerase activity9.58E-03
94GO:0008237: metallopeptidase activity1.04E-02
95GO:0005375: copper ion transmembrane transporter activity1.10E-02
96GO:0016413: O-acetyltransferase activity1.11E-02
97GO:0005384: manganese ion transmembrane transporter activity1.41E-02
98GO:0047617: acyl-CoA hydrolase activity1.41E-02
99GO:0004575: sucrose alpha-glucosidase activity1.41E-02
100GO:0005381: iron ion transmembrane transporter activity1.41E-02
101GO:0004805: trehalose-phosphatase activity1.57E-02
102GO:0005096: GTPase activator activity1.61E-02
103GO:0004252: serine-type endopeptidase activity1.65E-02
104GO:0044183: protein binding involved in protein folding1.74E-02
105GO:0047372: acylglycerol lipase activity1.74E-02
106GO:0016491: oxidoreductase activity1.81E-02
107GO:0000049: tRNA binding1.92E-02
108GO:0008378: galactosyltransferase activity1.92E-02
109GO:0004871: signal transducer activity2.00E-02
110GO:0004022: alcohol dehydrogenase (NAD) activity2.10E-02
111GO:0010329: auxin efflux transmembrane transporter activity2.10E-02
112GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.10E-02
113GO:0004089: carbonate dehydratase activity2.10E-02
114GO:0015095: magnesium ion transmembrane transporter activity2.10E-02
115GO:0031072: heat shock protein binding2.10E-02
116GO:0005262: calcium channel activity2.10E-02
117GO:0008266: poly(U) RNA binding2.29E-02
118GO:0003774: motor activity2.29E-02
119GO:0015293: symporter activity2.83E-02
120GO:0008324: cation transmembrane transporter activity3.10E-02
121GO:0043424: protein histidine kinase binding3.10E-02
122GO:0005215: transporter activity3.21E-02
123GO:0033612: receptor serine/threonine kinase binding3.32E-02
124GO:0004601: peroxidase activity3.75E-02
125GO:0045330: aspartyl esterase activity3.75E-02
126GO:0022891: substrate-specific transmembrane transporter activity3.77E-02
127GO:0003756: protein disulfide isomerase activity4.00E-02
128GO:0008289: lipid binding4.12E-02
129GO:0004812: aminoacyl-tRNA ligase activity4.23E-02
130GO:0030599: pectinesterase activity4.53E-02
131GO:0003713: transcription coactivator activity4.72E-02
132GO:0051082: unfolded protein binding4.81E-02
133GO:0050662: coenzyme binding4.97E-02
134GO:0016853: isomerase activity4.97E-02
RankGO TermAdjusted P value
1GO:0005835: fatty acid synthase complex0.00E+00
2GO:0009507: chloroplast2.50E-39
3GO:0009570: chloroplast stroma2.78E-29
4GO:0009941: chloroplast envelope4.86E-23
5GO:0009534: chloroplast thylakoid9.37E-20
6GO:0009543: chloroplast thylakoid lumen1.36E-15
7GO:0009535: chloroplast thylakoid membrane2.91E-13
8GO:0031977: thylakoid lumen1.58E-12
9GO:0009579: thylakoid6.08E-12
10GO:0009505: plant-type cell wall1.77E-08
11GO:0009533: chloroplast stromal thylakoid2.14E-05
12GO:0010007: magnesium chelatase complex4.08E-05
13GO:0048046: apoplast7.01E-05
14GO:0005618: cell wall1.06E-04
15GO:0009654: photosystem II oxygen evolving complex4.00E-04
16GO:0005840: ribosome5.12E-04
17GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.26E-04
18GO:0009344: nitrite reductase complex [NAD(P)H]5.26E-04
19GO:0043674: columella5.26E-04
20GO:0016020: membrane7.97E-04
21GO:0009536: plastid8.00E-04
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.01E-03
23GO:0031969: chloroplast membrane1.02E-03
24GO:0019898: extrinsic component of membrane1.03E-03
25GO:0046658: anchored component of plasma membrane2.01E-03
26GO:0030095: chloroplast photosystem II2.35E-03
27GO:0032432: actin filament bundle2.69E-03
28GO:0009346: citrate lyase complex2.69E-03
29GO:0009531: secondary cell wall2.69E-03
30GO:0005775: vacuolar lumen2.69E-03
31GO:0005960: glycine cleavage complex2.69E-03
32GO:0005886: plasma membrane2.83E-03
33GO:0010287: plastoglobule2.96E-03
34GO:0031209: SCAR complex5.76E-03
35GO:0031225: anchored component of membrane5.77E-03
36GO:0042807: central vacuole8.23E-03
37GO:0012507: ER to Golgi transport vesicle membrane9.58E-03
38GO:0009501: amyloplast9.58E-03
39GO:0009706: chloroplast inner membrane1.08E-02
40GO:0045298: tubulin complex1.25E-02
41GO:0016459: myosin complex1.57E-02
42GO:0005884: actin filament1.74E-02
43GO:0015934: large ribosomal subunit1.78E-02
44GO:0000311: plastid large ribosomal subunit1.92E-02
45GO:0032040: small-subunit processome1.92E-02
46GO:0009705: plant-type vacuole membrane2.17E-02
47GO:0031902: late endosome membrane2.32E-02
48GO:0043234: protein complex2.69E-02
49GO:0042651: thylakoid membrane3.10E-02
50GO:0005887: integral component of plasma membrane3.97E-02
51GO:0005576: extracellular region4.68E-02
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Gene type



Gene DE type