Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G65010

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:1905499: trichome papilla formation0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
8GO:0006223: uracil salvage0.00E+00
9GO:0060416: response to growth hormone0.00E+00
10GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
11GO:0015995: chlorophyll biosynthetic process1.33E-08
12GO:0032544: plastid translation2.74E-07
13GO:0006782: protoporphyrinogen IX biosynthetic process9.83E-07
14GO:0006783: heme biosynthetic process2.54E-05
15GO:0042254: ribosome biogenesis3.28E-05
16GO:0006412: translation8.47E-05
17GO:0010027: thylakoid membrane organization9.87E-05
18GO:1901259: chloroplast rRNA processing2.49E-04
19GO:0042372: phylloquinone biosynthetic process2.49E-04
20GO:0010444: guard mother cell differentiation3.23E-04
21GO:1904966: positive regulation of vitamin E biosynthetic process3.65E-04
22GO:0010442: guard cell morphogenesis3.65E-04
23GO:1904964: positive regulation of phytol biosynthetic process3.65E-04
24GO:0042371: vitamin K biosynthetic process3.65E-04
25GO:0043686: co-translational protein modification3.65E-04
26GO:0043007: maintenance of rDNA3.65E-04
27GO:0034337: RNA folding3.65E-04
28GO:0048363: mucilage pectin metabolic process3.65E-04
29GO:0006438: valyl-tRNA aminoacylation3.65E-04
30GO:0045454: cell redox homeostasis4.86E-04
31GO:0009932: cell tip growth4.96E-04
32GO:0006779: porphyrin-containing compound biosynthetic process7.02E-04
33GO:0071668: plant-type cell wall assembly7.94E-04
34GO:0080148: negative regulation of response to water deprivation7.94E-04
35GO:0008616: queuosine biosynthetic process7.94E-04
36GO:0006568: tryptophan metabolic process7.94E-04
37GO:2000123: positive regulation of stomatal complex development7.94E-04
38GO:0043039: tRNA aminoacylation7.94E-04
39GO:0052541: plant-type cell wall cellulose metabolic process7.94E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process7.94E-04
41GO:0009658: chloroplast organization1.01E-03
42GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.29E-03
43GO:0051604: protein maturation1.29E-03
44GO:0006760: folic acid-containing compound metabolic process1.29E-03
45GO:0090391: granum assembly1.29E-03
46GO:0006518: peptide metabolic process1.29E-03
47GO:0010207: photosystem II assembly1.37E-03
48GO:0006165: nucleoside diphosphate phosphorylation1.85E-03
49GO:0046739: transport of virus in multicellular host1.85E-03
50GO:0006228: UTP biosynthetic process1.85E-03
51GO:0050482: arachidonic acid secretion1.85E-03
52GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.85E-03
53GO:2001141: regulation of RNA biosynthetic process1.85E-03
54GO:0006241: CTP biosynthetic process1.85E-03
55GO:0009052: pentose-phosphate shunt, non-oxidative branch1.85E-03
56GO:0006424: glutamyl-tRNA aminoacylation1.85E-03
57GO:0009735: response to cytokinin1.93E-03
58GO:0006633: fatty acid biosynthetic process1.97E-03
59GO:0006418: tRNA aminoacylation for protein translation2.09E-03
60GO:0006021: inositol biosynthetic process2.49E-03
61GO:0030007: cellular potassium ion homeostasis2.49E-03
62GO:0044206: UMP salvage2.49E-03
63GO:0006749: glutathione metabolic process2.49E-03
64GO:0015976: carbon utilization2.49E-03
65GO:0006183: GTP biosynthetic process2.49E-03
66GO:2000038: regulation of stomatal complex development2.49E-03
67GO:0046656: folic acid biosynthetic process2.49E-03
68GO:0008643: carbohydrate transport2.58E-03
69GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.74E-03
70GO:0048359: mucilage metabolic process involved in seed coat development3.18E-03
71GO:0032543: mitochondrial translation3.18E-03
72GO:0043097: pyrimidine nucleoside salvage3.18E-03
73GO:0010236: plastoquinone biosynthetic process3.18E-03
74GO:0045038: protein import into chloroplast thylakoid membrane3.18E-03
75GO:0031365: N-terminal protein amino acid modification3.18E-03
76GO:0016123: xanthophyll biosynthetic process3.18E-03
77GO:0006665: sphingolipid metabolic process3.18E-03
78GO:0010375: stomatal complex patterning3.18E-03
79GO:0042335: cuticle development3.49E-03
80GO:0006206: pyrimidine nucleobase metabolic process3.93E-03
81GO:0007035: vacuolar acidification3.93E-03
82GO:0009117: nucleotide metabolic process3.93E-03
83GO:0046855: inositol phosphate dephosphorylation3.93E-03
84GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.93E-03
85GO:0006655: phosphatidylglycerol biosynthetic process3.93E-03
86GO:0010190: cytochrome b6f complex assembly3.93E-03
87GO:0048280: vesicle fusion with Golgi apparatus4.74E-03
88GO:0046654: tetrahydrofolate biosynthetic process4.74E-03
89GO:0009854: oxidative photosynthetic carbon pathway4.74E-03
90GO:0010019: chloroplast-nucleus signaling pathway4.74E-03
91GO:0009955: adaxial/abaxial pattern specification4.74E-03
92GO:0032502: developmental process4.96E-03
93GO:0009772: photosynthetic electron transport in photosystem II5.60E-03
94GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.60E-03
95GO:0010196: nonphotochemical quenching5.60E-03
96GO:0009828: plant-type cell wall loosening5.63E-03
97GO:0007267: cell-cell signaling5.99E-03
98GO:0042255: ribosome assembly6.51E-03
99GO:0006605: protein targeting6.51E-03
100GO:0006353: DNA-templated transcription, termination6.51E-03
101GO:0009704: de-etiolation6.51E-03
102GO:0006875: cellular metal ion homeostasis6.51E-03
103GO:0006644: phospholipid metabolic process6.51E-03
104GO:0010497: plasmodesmata-mediated intercellular transport7.47E-03
105GO:0017004: cytochrome complex assembly7.47E-03
106GO:0071482: cellular response to light stimulus7.47E-03
107GO:0042128: nitrate assimilation7.51E-03
108GO:0015979: photosynthesis7.51E-03
109GO:0010411: xyloglucan metabolic process7.93E-03
110GO:0015780: nucleotide-sugar transport8.47E-03
111GO:0034765: regulation of ion transmembrane transport8.47E-03
112GO:0042761: very long-chain fatty acid biosynthetic process9.53E-03
113GO:0048354: mucilage biosynthetic process involved in seed coat development9.53E-03
114GO:0009407: toxin catabolic process9.70E-03
115GO:0006535: cysteine biosynthetic process from serine1.06E-02
116GO:0043069: negative regulation of programmed cell death1.06E-02
117GO:0045036: protein targeting to chloroplast1.06E-02
118GO:0006896: Golgi to vacuole transport1.06E-02
119GO:0006352: DNA-templated transcription, initiation1.18E-02
120GO:0006415: translational termination1.18E-02
121GO:0048765: root hair cell differentiation1.18E-02
122GO:0030148: sphingolipid biosynthetic process1.18E-02
123GO:0000038: very long-chain fatty acid metabolic process1.18E-02
124GO:0043085: positive regulation of catalytic activity1.18E-02
125GO:0016024: CDP-diacylglycerol biosynthetic process1.30E-02
126GO:0045037: protein import into chloroplast stroma1.30E-02
127GO:0006790: sulfur compound metabolic process1.30E-02
128GO:0006631: fatty acid metabolic process1.33E-02
129GO:0050826: response to freezing1.42E-02
130GO:0042546: cell wall biogenesis1.50E-02
131GO:0009636: response to toxic substance1.62E-02
132GO:0046854: phosphatidylinositol phosphorylation1.68E-02
133GO:0010053: root epidermal cell differentiation1.68E-02
134GO:0019853: L-ascorbic acid biosynthetic process1.68E-02
135GO:0010167: response to nitrate1.68E-02
136GO:0009664: plant-type cell wall organization1.81E-02
137GO:0006071: glycerol metabolic process1.81E-02
138GO:0010025: wax biosynthetic process1.81E-02
139GO:0009793: embryo development ending in seed dormancy1.84E-02
140GO:0006487: protein N-linked glycosylation1.95E-02
141GO:0019344: cysteine biosynthetic process1.95E-02
142GO:0009116: nucleoside metabolic process1.95E-02
143GO:0000027: ribosomal large subunit assembly1.95E-02
144GO:0007017: microtubule-based process2.09E-02
145GO:0010026: trichome differentiation2.09E-02
146GO:0016998: cell wall macromolecule catabolic process2.24E-02
147GO:0015992: proton transport2.24E-02
148GO:0051260: protein homooligomerization2.24E-02
149GO:0061077: chaperone-mediated protein folding2.24E-02
150GO:0080167: response to karrikin2.46E-02
151GO:0009411: response to UV2.54E-02
152GO:0042127: regulation of cell proliferation2.69E-02
153GO:0019722: calcium-mediated signaling2.69E-02
154GO:0009306: protein secretion2.69E-02
155GO:0010091: trichome branching2.69E-02
156GO:0055114: oxidation-reduction process2.84E-02
157GO:0016117: carotenoid biosynthetic process2.85E-02
158GO:0070417: cellular response to cold2.85E-02
159GO:0042147: retrograde transport, endosome to Golgi2.85E-02
160GO:0000271: polysaccharide biosynthetic process3.01E-02
161GO:0080022: primary root development3.01E-02
162GO:0006662: glycerol ether metabolic process3.18E-02
163GO:0009741: response to brassinosteroid3.18E-02
164GO:0045489: pectin biosynthetic process3.18E-02
165GO:0008654: phospholipid biosynthetic process3.52E-02
166GO:0006623: protein targeting to vacuole3.52E-02
167GO:0006891: intra-Golgi vesicle-mediated transport3.69E-02
168GO:0010583: response to cyclopentenone3.87E-02
169GO:1901657: glycosyl compound metabolic process4.05E-02
170GO:0009567: double fertilization forming a zygote and endosperm4.23E-02
171GO:0071805: potassium ion transmembrane transport4.42E-02
172GO:0040008: regulation of growth4.56E-02
173GO:0000910: cytokinesis4.61E-02
174GO:0016126: sterol biosynthetic process4.80E-02
175GO:0010029: regulation of seed germination4.99E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
3GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
4GO:0004418: hydroxymethylbilane synthase activity0.00E+00
5GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
9GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
10GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
11GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
14GO:0015269: calcium-activated potassium channel activity0.00E+00
15GO:0050613: delta14-sterol reductase activity0.00E+00
16GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding0.00E+00
17GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
18GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
19GO:0019843: rRNA binding2.72E-06
20GO:0003735: structural constituent of ribosome5.75E-05
21GO:0042586: peptide deformylase activity3.65E-04
22GO:0015088: copper uptake transmembrane transporter activity3.65E-04
23GO:0004832: valine-tRNA ligase activity3.65E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity3.65E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.65E-04
26GO:0030794: (S)-coclaurine-N-methyltransferase activity3.65E-04
27GO:0004425: indole-3-glycerol-phosphate synthase activity3.65E-04
28GO:0004560: alpha-L-fucosidase activity3.65E-04
29GO:0080132: fatty acid alpha-hydroxylase activity3.65E-04
30GO:0052631: sphingolipid delta-8 desaturase activity3.65E-04
31GO:0004831: tyrosine-tRNA ligase activity3.65E-04
32GO:0009374: biotin binding3.65E-04
33GO:0010291: carotene beta-ring hydroxylase activity7.94E-04
34GO:0102083: 7,8-dihydromonapterin aldolase activity7.94E-04
35GO:0052832: inositol monophosphate 3-phosphatase activity7.94E-04
36GO:0008479: queuine tRNA-ribosyltransferase activity7.94E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity7.94E-04
38GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.94E-04
39GO:0004150: dihydroneopterin aldolase activity7.94E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity7.94E-04
41GO:0008794: arsenate reductase (glutaredoxin) activity9.42E-04
42GO:0004148: dihydrolipoyl dehydrogenase activity1.29E-03
43GO:0004751: ribose-5-phosphate isomerase activity1.29E-03
44GO:0005504: fatty acid binding1.29E-03
45GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.85E-03
46GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.85E-03
47GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.85E-03
48GO:0016851: magnesium chelatase activity1.85E-03
49GO:0004550: nucleoside diphosphate kinase activity1.85E-03
50GO:0008097: 5S rRNA binding1.85E-03
51GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.85E-03
52GO:0035529: NADH pyrophosphatase activity1.85E-03
53GO:0016149: translation release factor activity, codon specific1.85E-03
54GO:0005528: FK506 binding1.89E-03
55GO:0016491: oxidoreductase activity1.89E-03
56GO:0043495: protein anchor2.49E-03
57GO:0004659: prenyltransferase activity2.49E-03
58GO:0001053: plastid sigma factor activity2.49E-03
59GO:0004845: uracil phosphoribosyltransferase activity2.49E-03
60GO:0004045: aminoacyl-tRNA hydrolase activity2.49E-03
61GO:0016987: sigma factor activity2.49E-03
62GO:0045430: chalcone isomerase activity2.49E-03
63GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.84E-03
64GO:0008514: organic anion transmembrane transporter activity2.98E-03
65GO:0004040: amidase activity3.18E-03
66GO:0003989: acetyl-CoA carboxylase activity3.18E-03
67GO:0009922: fatty acid elongase activity3.18E-03
68GO:0030414: peptidase inhibitor activity3.18E-03
69GO:0004623: phospholipase A2 activity3.18E-03
70GO:0004812: aminoacyl-tRNA ligase activity3.23E-03
71GO:0016462: pyrophosphatase activity3.93E-03
72GO:0015271: outward rectifier potassium channel activity3.93E-03
73GO:0004605: phosphatidate cytidylyltransferase activity3.93E-03
74GO:0080030: methyl indole-3-acetate esterase activity3.93E-03
75GO:0016208: AMP binding3.93E-03
76GO:0016762: xyloglucan:xyloglucosyl transferase activity4.65E-03
77GO:0004124: cysteine synthase activity4.74E-03
78GO:0051920: peroxiredoxin activity4.74E-03
79GO:0051753: mannan synthase activity4.74E-03
80GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.74E-03
81GO:0004849: uridine kinase activity4.74E-03
82GO:0015035: protein disulfide oxidoreductase activity5.56E-03
83GO:0043295: glutathione binding5.60E-03
84GO:0019899: enzyme binding5.60E-03
85GO:0016722: oxidoreductase activity, oxidizing metal ions5.99E-03
86GO:0016209: antioxidant activity6.51E-03
87GO:0008312: 7S RNA binding6.51E-03
88GO:0052689: carboxylic ester hydrolase activity7.16E-03
89GO:0005267: potassium channel activity7.47E-03
90GO:0016798: hydrolase activity, acting on glycosyl bonds7.93E-03
91GO:0003747: translation release factor activity8.47E-03
92GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors8.47E-03
93GO:0008889: glycerophosphodiester phosphodiesterase activity8.47E-03
94GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.79E-03
95GO:0005381: iron ion transmembrane transporter activity9.53E-03
96GO:0008047: enzyme activator activity1.06E-02
97GO:0046961: proton-transporting ATPase activity, rotational mechanism1.18E-02
98GO:0004364: glutathione transferase activity1.39E-02
99GO:0004089: carbonate dehydratase activity1.42E-02
100GO:0051537: 2 iron, 2 sulfur cluster binding1.56E-02
101GO:0051119: sugar transmembrane transporter activity1.68E-02
102GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.81E-02
103GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.81E-02
104GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.81E-02
105GO:0004601: peroxidase activity1.88E-02
106GO:0016788: hydrolase activity, acting on ester bonds1.92E-02
107GO:0005216: ion channel activity2.09E-02
108GO:0004176: ATP-dependent peptidase activity2.24E-02
109GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.38E-02
110GO:0022891: substrate-specific transmembrane transporter activity2.54E-02
111GO:0004650: polygalacturonase activity2.54E-02
112GO:0003727: single-stranded RNA binding2.69E-02
113GO:0047134: protein-disulfide reductase activity2.85E-02
114GO:0003713: transcription coactivator activity3.18E-02
115GO:0008080: N-acetyltransferase activity3.18E-02
116GO:0010181: FMN binding3.35E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.35E-02
118GO:0016758: transferase activity, transferring hexosyl groups3.38E-02
119GO:0019901: protein kinase binding3.52E-02
120GO:0030170: pyridoxal phosphate binding3.85E-02
121GO:0000156: phosphorelay response regulator activity4.05E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.05E-02
123GO:0009055: electron carrier activity4.35E-02
124GO:0008237: metallopeptidase activity4.42E-02
125GO:0005200: structural constituent of cytoskeleton4.42E-02
126GO:0008483: transaminase activity4.42E-02
127GO:0016597: amino acid binding4.61E-02
128GO:0016168: chlorophyll binding4.99E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009507: chloroplast7.55E-35
4GO:0009570: chloroplast stroma2.94E-29
5GO:0009941: chloroplast envelope4.57E-21
6GO:0009535: chloroplast thylakoid membrane5.91E-16
7GO:0009579: thylakoid1.53E-09
8GO:0009543: chloroplast thylakoid lumen9.47E-09
9GO:0005840: ribosome4.37E-07
10GO:0031977: thylakoid lumen2.01E-06
11GO:0009534: chloroplast thylakoid5.94E-05
12GO:0031225: anchored component of membrane1.36E-04
13GO:0046658: anchored component of plasma membrane1.45E-04
14GO:0009536: plastid1.49E-04
15GO:0048046: apoplast1.83E-04
16GO:0009515: granal stacked thylakoid3.65E-04
17GO:0009923: fatty acid elongase complex3.65E-04
18GO:0080085: signal recognition particle, chloroplast targeting7.94E-04
19GO:0009509: chromoplast1.29E-03
20GO:0009317: acetyl-CoA carboxylase complex1.29E-03
21GO:0010007: magnesium chelatase complex1.29E-03
22GO:0031969: chloroplast membrane1.46E-03
23GO:0005618: cell wall1.75E-03
24GO:0009654: photosystem II oxygen evolving complex2.09E-03
25GO:0031897: Tic complex2.49E-03
26GO:0009526: plastid envelope2.49E-03
27GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.18E-03
28GO:0055035: plastid thylakoid membrane3.18E-03
29GO:0019898: extrinsic component of membrane4.34E-03
30GO:0009533: chloroplast stromal thylakoid5.60E-03
31GO:0012507: ER to Golgi transport vesicle membrane6.51E-03
32GO:0016021: integral component of membrane6.89E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.47E-03
34GO:0045298: tubulin complex8.47E-03
35GO:0005763: mitochondrial small ribosomal subunit8.47E-03
36GO:0009707: chloroplast outer membrane8.79E-03
37GO:0032040: small-subunit processome1.30E-02
38GO:0009508: plastid chromosome1.42E-02
39GO:0009505: plant-type cell wall1.43E-02
40GO:0030176: integral component of endoplasmic reticulum membrane1.68E-02
41GO:0042651: thylakoid membrane2.09E-02
42GO:0005576: extracellular region2.23E-02
43GO:0015935: small ribosomal subunit2.24E-02
44GO:0031410: cytoplasmic vesicle2.38E-02
45GO:0009706: chloroplast inner membrane2.78E-02
46GO:0009523: photosystem II3.52E-02
47GO:0009504: cell plate3.52E-02
48GO:0005778: peroxisomal membrane4.42E-02
49GO:0009295: nucleoid4.42E-02
50GO:0030529: intracellular ribonucleoprotein complex4.80E-02
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Gene type



Gene DE type