GO Enrichment Analysis of Co-expressed Genes with
AT5G62980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 5 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 6 | GO:0006223: uracil salvage | 0.00E+00 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 2.57E-09 |
| 8 | GO:0032544: plastid translation | 1.19E-06 |
| 9 | GO:0006783: heme biosynthetic process | 1.69E-06 |
| 10 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.11E-06 |
| 11 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.48E-06 |
| 12 | GO:1901259: chloroplast rRNA processing | 4.28E-05 |
| 13 | GO:0009658: chloroplast organization | 4.38E-05 |
| 14 | GO:0032365: intracellular lipid transport | 1.20E-04 |
| 15 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.41E-04 |
| 16 | GO:0070981: L-asparagine biosynthetic process | 2.77E-04 |
| 17 | GO:0080183: response to photooxidative stress | 2.77E-04 |
| 18 | GO:0006529: asparagine biosynthetic process | 2.77E-04 |
| 19 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.77E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 2.77E-04 |
| 21 | GO:2000123: positive regulation of stomatal complex development | 2.77E-04 |
| 22 | GO:0006423: cysteinyl-tRNA aminoacylation | 2.77E-04 |
| 23 | GO:0009735: response to cytokinin | 4.04E-04 |
| 24 | GO:0051604: protein maturation | 4.58E-04 |
| 25 | GO:0071492: cellular response to UV-A | 4.58E-04 |
| 26 | GO:0015714: phosphoenolpyruvate transport | 4.58E-04 |
| 27 | GO:0090391: granum assembly | 4.58E-04 |
| 28 | GO:0006986: response to unfolded protein | 6.57E-04 |
| 29 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.57E-04 |
| 30 | GO:0006241: CTP biosynthetic process | 6.57E-04 |
| 31 | GO:0006165: nucleoside diphosphate phosphorylation | 6.57E-04 |
| 32 | GO:0006228: UTP biosynthetic process | 6.57E-04 |
| 33 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.57E-04 |
| 34 | GO:0033014: tetrapyrrole biosynthetic process | 6.57E-04 |
| 35 | GO:0015979: photosynthesis | 6.66E-04 |
| 36 | GO:0006457: protein folding | 7.52E-04 |
| 37 | GO:0006021: inositol biosynthetic process | 8.72E-04 |
| 38 | GO:0071486: cellular response to high light intensity | 8.72E-04 |
| 39 | GO:0006183: GTP biosynthetic process | 8.72E-04 |
| 40 | GO:0030007: cellular potassium ion homeostasis | 8.72E-04 |
| 41 | GO:0015713: phosphoglycerate transport | 8.72E-04 |
| 42 | GO:0044206: UMP salvage | 8.72E-04 |
| 43 | GO:2000038: regulation of stomatal complex development | 8.72E-04 |
| 44 | GO:0032502: developmental process | 1.04E-03 |
| 45 | GO:0010375: stomatal complex patterning | 1.10E-03 |
| 46 | GO:0043097: pyrimidine nucleoside salvage | 1.10E-03 |
| 47 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.35E-03 |
| 48 | GO:0006206: pyrimidine nucleobase metabolic process | 1.35E-03 |
| 49 | GO:0046855: inositol phosphate dephosphorylation | 1.35E-03 |
| 50 | GO:0006796: phosphate-containing compound metabolic process | 1.35E-03 |
| 51 | GO:0010190: cytochrome b6f complex assembly | 1.35E-03 |
| 52 | GO:0010027: thylakoid membrane organization | 1.39E-03 |
| 53 | GO:0009627: systemic acquired resistance | 1.55E-03 |
| 54 | GO:0017148: negative regulation of translation | 1.61E-03 |
| 55 | GO:0009955: adaxial/abaxial pattern specification | 1.61E-03 |
| 56 | GO:0042026: protein refolding | 1.61E-03 |
| 57 | GO:0010196: nonphotochemical quenching | 1.89E-03 |
| 58 | GO:0006826: iron ion transport | 1.89E-03 |
| 59 | GO:0048564: photosystem I assembly | 2.19E-03 |
| 60 | GO:0042255: ribosome assembly | 2.19E-03 |
| 61 | GO:0006353: DNA-templated transcription, termination | 2.19E-03 |
| 62 | GO:0009657: plastid organization | 2.50E-03 |
| 63 | GO:0034765: regulation of ion transmembrane transport | 2.82E-03 |
| 64 | GO:0009245: lipid A biosynthetic process | 2.82E-03 |
| 65 | GO:0043067: regulation of programmed cell death | 3.16E-03 |
| 66 | GO:0031425: chloroplast RNA processing | 3.16E-03 |
| 67 | GO:0045036: protein targeting to chloroplast | 3.51E-03 |
| 68 | GO:0019538: protein metabolic process | 3.51E-03 |
| 69 | GO:0042538: hyperosmotic salinity response | 3.66E-03 |
| 70 | GO:0043085: positive regulation of catalytic activity | 3.88E-03 |
| 71 | GO:0006790: sulfur compound metabolic process | 4.26E-03 |
| 72 | GO:0009767: photosynthetic electron transport chain | 4.64E-03 |
| 73 | GO:0006541: glutamine metabolic process | 5.04E-03 |
| 74 | GO:0019253: reductive pentose-phosphate cycle | 5.04E-03 |
| 75 | GO:0010039: response to iron ion | 5.46E-03 |
| 76 | GO:0046854: phosphatidylinositol phosphorylation | 5.46E-03 |
| 77 | GO:0019853: L-ascorbic acid biosynthetic process | 5.46E-03 |
| 78 | GO:0009116: nucleoside metabolic process | 6.32E-03 |
| 79 | GO:0042742: defense response to bacterium | 6.77E-03 |
| 80 | GO:0051260: protein homooligomerization | 7.22E-03 |
| 81 | GO:0007005: mitochondrion organization | 7.69E-03 |
| 82 | GO:0009411: response to UV | 8.18E-03 |
| 83 | GO:0006633: fatty acid biosynthetic process | 8.77E-03 |
| 84 | GO:0006413: translational initiation | 8.98E-03 |
| 85 | GO:0042335: cuticle development | 9.68E-03 |
| 86 | GO:0006412: translation | 9.89E-03 |
| 87 | GO:0006662: glycerol ether metabolic process | 1.02E-02 |
| 88 | GO:0010197: polar nucleus fusion | 1.02E-02 |
| 89 | GO:0009741: response to brassinosteroid | 1.02E-02 |
| 90 | GO:0009646: response to absence of light | 1.07E-02 |
| 91 | GO:0009791: post-embryonic development | 1.13E-02 |
| 92 | GO:0008380: RNA splicing | 1.15E-02 |
| 93 | GO:0010583: response to cyclopentenone | 1.24E-02 |
| 94 | GO:1901657: glycosyl compound metabolic process | 1.30E-02 |
| 95 | GO:0007267: cell-cell signaling | 1.41E-02 |
| 96 | GO:0010286: heat acclimation | 1.41E-02 |
| 97 | GO:0071805: potassium ion transmembrane transport | 1.41E-02 |
| 98 | GO:0010029: regulation of seed germination | 1.60E-02 |
| 99 | GO:0008219: cell death | 1.85E-02 |
| 100 | GO:0080167: response to karrikin | 1.86E-02 |
| 101 | GO:0010119: regulation of stomatal movement | 2.05E-02 |
| 102 | GO:0034599: cellular response to oxidative stress | 2.26E-02 |
| 103 | GO:0006839: mitochondrial transport | 2.41E-02 |
| 104 | GO:0042542: response to hydrogen peroxide | 2.55E-02 |
| 105 | GO:0009644: response to high light intensity | 2.78E-02 |
| 106 | GO:0008643: carbohydrate transport | 2.78E-02 |
| 107 | GO:0006397: mRNA processing | 2.86E-02 |
| 108 | GO:0009585: red, far-red light phototransduction | 3.25E-02 |
| 109 | GO:0006096: glycolytic process | 3.66E-02 |
| 110 | GO:0009409: response to cold | 3.89E-02 |
| 111 | GO:0009742: brassinosteroid mediated signaling pathway | 4.35E-02 |
| 112 | GO:0009416: response to light stimulus | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 3 | GO:0016851: magnesium chelatase activity | 6.48E-06 |
| 4 | GO:0051087: chaperone binding | 1.71E-05 |
| 5 | GO:0051082: unfolded protein binding | 7.23E-05 |
| 6 | GO:0009374: biotin binding | 1.20E-04 |
| 7 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.20E-04 |
| 8 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.20E-04 |
| 9 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.20E-04 |
| 10 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.20E-04 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.20E-04 |
| 12 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.20E-04 |
| 13 | GO:0004071: aspartate-ammonia ligase activity | 1.20E-04 |
| 14 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.20E-04 |
| 15 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.20E-04 |
| 16 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.77E-04 |
| 17 | GO:0004817: cysteine-tRNA ligase activity | 2.77E-04 |
| 18 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.77E-04 |
| 19 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.77E-04 |
| 20 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.77E-04 |
| 21 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 2.77E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 4.58E-04 |
| 23 | GO:0004550: nucleoside diphosphate kinase activity | 6.57E-04 |
| 24 | GO:0043023: ribosomal large subunit binding | 6.57E-04 |
| 25 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.57E-04 |
| 26 | GO:0042803: protein homodimerization activity | 7.68E-04 |
| 27 | GO:0015120: phosphoglycerate transmembrane transporter activity | 8.72E-04 |
| 28 | GO:0005319: lipid transporter activity | 8.72E-04 |
| 29 | GO:0004845: uracil phosphoribosyltransferase activity | 8.72E-04 |
| 30 | GO:0004045: aminoacyl-tRNA hydrolase activity | 8.72E-04 |
| 31 | GO:0043495: protein anchor | 8.72E-04 |
| 32 | GO:0003989: acetyl-CoA carboxylase activity | 1.10E-03 |
| 33 | GO:0004040: amidase activity | 1.10E-03 |
| 34 | GO:0030414: peptidase inhibitor activity | 1.10E-03 |
| 35 | GO:0031177: phosphopantetheine binding | 1.35E-03 |
| 36 | GO:0016462: pyrophosphatase activity | 1.35E-03 |
| 37 | GO:0015271: outward rectifier potassium channel activity | 1.35E-03 |
| 38 | GO:0000035: acyl binding | 1.61E-03 |
| 39 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.61E-03 |
| 40 | GO:0004849: uridine kinase activity | 1.61E-03 |
| 41 | GO:0004427: inorganic diphosphatase activity | 1.89E-03 |
| 42 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.19E-03 |
| 43 | GO:0005267: potassium channel activity | 2.50E-03 |
| 44 | GO:0008047: enzyme activator activity | 3.51E-03 |
| 45 | GO:0044183: protein binding involved in protein folding | 3.88E-03 |
| 46 | GO:0005543: phospholipid binding | 3.88E-03 |
| 47 | GO:0031072: heat shock protein binding | 4.64E-03 |
| 48 | GO:0051119: sugar transmembrane transporter activity | 5.46E-03 |
| 49 | GO:0043424: protein histidine kinase binding | 6.76E-03 |
| 50 | GO:0005216: ion channel activity | 6.76E-03 |
| 51 | GO:0019843: rRNA binding | 6.98E-03 |
| 52 | GO:0022891: substrate-specific transmembrane transporter activity | 8.18E-03 |
| 53 | GO:0003727: single-stranded RNA binding | 8.66E-03 |
| 54 | GO:0047134: protein-disulfide reductase activity | 9.17E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 1.07E-02 |
| 56 | GO:0010181: FMN binding | 1.07E-02 |
| 57 | GO:0019901: protein kinase binding | 1.13E-02 |
| 58 | GO:0003743: translation initiation factor activity | 1.13E-02 |
| 59 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.30E-02 |
| 60 | GO:0008483: transaminase activity | 1.41E-02 |
| 61 | GO:0004601: peroxidase activity | 1.50E-02 |
| 62 | GO:0016168: chlorophyll binding | 1.60E-02 |
| 63 | GO:0102483: scopolin beta-glucosidase activity | 1.72E-02 |
| 64 | GO:0008236: serine-type peptidase activity | 1.79E-02 |
| 65 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.85E-02 |
| 66 | GO:0003735: structural constituent of ribosome | 1.91E-02 |
| 67 | GO:0003746: translation elongation factor activity | 2.19E-02 |
| 68 | GO:0008422: beta-glucosidase activity | 2.33E-02 |
| 69 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.93E-02 |
| 70 | GO:0003690: double-stranded DNA binding | 3.33E-02 |
| 71 | GO:0004650: polygalacturonase activity | 3.91E-02 |
| 72 | GO:0022857: transmembrane transporter activity | 4.00E-02 |
| 73 | GO:0016887: ATPase activity | 4.24E-02 |
| 74 | GO:0015035: protein disulfide oxidoreductase activity | 4.26E-02 |
| 75 | GO:0003729: mRNA binding | 4.36E-02 |
| 76 | GO:0016758: transferase activity, transferring hexosyl groups | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.18E-41 |
| 2 | GO:0009570: chloroplast stroma | 5.66E-35 |
| 3 | GO:0009941: chloroplast envelope | 5.00E-17 |
| 4 | GO:0009579: thylakoid | 3.10E-14 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 2.13E-10 |
| 6 | GO:0009536: plastid | 1.19E-04 |
| 7 | GO:0009515: granal stacked thylakoid | 1.20E-04 |
| 8 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.20E-04 |
| 9 | GO:0009508: plastid chromosome | 2.59E-04 |
| 10 | GO:0005840: ribosome | 4.18E-04 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 4.51E-04 |
| 12 | GO:0010007: magnesium chelatase complex | 4.58E-04 |
| 13 | GO:0009317: acetyl-CoA carboxylase complex | 4.58E-04 |
| 14 | GO:0009534: chloroplast thylakoid | 6.66E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 7.22E-04 |
| 16 | GO:0009526: plastid envelope | 8.72E-04 |
| 17 | GO:0055035: plastid thylakoid membrane | 1.10E-03 |
| 18 | GO:0009295: nucleoid | 1.24E-03 |
| 19 | GO:0005759: mitochondrial matrix | 1.26E-03 |
| 20 | GO:0030529: intracellular ribonucleoprotein complex | 1.39E-03 |
| 21 | GO:0009539: photosystem II reaction center | 2.50E-03 |
| 22 | GO:0005763: mitochondrial small ribosomal subunit | 2.82E-03 |
| 23 | GO:0043234: protein complex | 5.88E-03 |
| 24 | GO:0009543: chloroplast thylakoid lumen | 6.98E-03 |
| 25 | GO:0009532: plastid stroma | 7.22E-03 |
| 26 | GO:0009523: photosystem II | 1.13E-02 |
| 27 | GO:0019898: extrinsic component of membrane | 1.13E-02 |
| 28 | GO:0010319: stromule | 1.41E-02 |
| 29 | GO:0009707: chloroplast outer membrane | 1.85E-02 |
| 30 | GO:0031969: chloroplast membrane | 1.86E-02 |
| 31 | GO:0015934: large ribosomal subunit | 2.05E-02 |
| 32 | GO:0048046: apoplast | 4.61E-02 |
| 33 | GO:0022626: cytosolic ribosome | 4.64E-02 |
| 34 | GO:0005623: cell | 4.99E-02 |