co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G62720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0034337: RNA folding	0.00E+00
3	GO:0042593: glucose homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
7	GO:0033494: ferulate metabolic process	0.00E+00
8	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
9	GO:0061635: regulation of protein complex stability	0.00E+00
10	GO:0090042: tubulin deacetylation	0.00E+00
11	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
12	GO:0006412: translation	8.08E-12
13	GO:0042254: ribosome biogenesis	4.21E-09
14	GO:0032544: plastid translation	4.46E-09
15	GO:0009735: response to cytokinin	1.14E-07
16	GO:0015979: photosynthesis	2.88E-06
17	GO:0010207: photosystem II assembly	5.51E-06
18	GO:0010206: photosystem II repair	3.56E-05
19	GO:0009658: chloroplast organization	5.76E-05
20	GO:0006546: glycine catabolic process	1.04E-04
21	GO:0009767: photosynthetic electron transport chain	1.16E-04
22	GO:0010027: thylakoid membrane organization	1.44E-04
23	GO:0015995: chlorophyll biosynthetic process	1.91E-04
24	GO:1901259: chloroplast rRNA processing	3.09E-04
25	GO:0010196: nonphotochemical quenching	3.99E-04
26	GO:0009645: response to low light intensity stimulus	3.99E-04
27	GO:0000481: maturation of 5S rRNA	4.21E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	4.21E-04
29	GO:0042371: vitamin K biosynthetic process	4.21E-04
30	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.21E-04
31	GO:0046520: sphingoid biosynthetic process	4.21E-04
32	GO:1904966: positive regulation of vitamin E biosynthetic process	4.21E-04
33	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.62E-04
34	GO:0034220: ion transmembrane transport	5.10E-04
35	GO:0000413: protein peptidyl-prolyl isomerization	5.10E-04
36	GO:0006633: fatty acid biosynthetic process	5.73E-04
37	GO:0006521: regulation of cellular amino acid metabolic process	9.10E-04
38	GO:0010275: NAD(P)H dehydrogenase complex assembly	9.10E-04
39	GO:1902326: positive regulation of chlorophyll biosynthetic process	9.10E-04
40	GO:0019388: galactose catabolic process	9.10E-04
41	GO:0009409: response to cold	1.18E-03
42	GO:0016024: CDP-diacylglycerol biosynthetic process	1.32E-03
43	GO:0010411: xyloglucan metabolic process	1.43E-03
44	GO:0045493: xylan catabolic process	1.48E-03
45	GO:2001295: malonyl-CoA biosynthetic process	1.48E-03
46	GO:0090391: granum assembly	1.48E-03
47	GO:0018298: protein-chromophore linkage	1.63E-03
48	GO:0010143: cutin biosynthetic process	1.68E-03
49	GO:0010030: positive regulation of seed germination	1.89E-03
50	GO:0006833: water transport	2.10E-03
51	GO:0009590: detection of gravity	2.14E-03
52	GO:0055070: copper ion homeostasis	2.14E-03
53	GO:2001141: regulation of RNA biosynthetic process	2.14E-03
54	GO:0071484: cellular response to light intensity	2.14E-03
55	GO:0080170: hydrogen peroxide transmembrane transport	2.14E-03
56	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.14E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.14E-03
58	GO:0006424: glutamyl-tRNA aminoacylation	2.14E-03
59	GO:0019344: cysteine biosynthetic process	2.33E-03
60	GO:0009768: photosynthesis, light harvesting in photosystem I	2.58E-03
61	GO:0030001: metal ion transport	2.61E-03
62	GO:0019464: glycine decarboxylation via glycine cleavage system	2.88E-03
63	GO:0030104: water homeostasis	2.88E-03
64	GO:0045454: cell redox homeostasis	2.93E-03
65	GO:0010236: plastoquinone biosynthetic process	3.68E-03
66	GO:0035434: copper ion transmembrane transport	3.68E-03
67	GO:0016123: xanthophyll biosynthetic process	3.68E-03
68	GO:0006465: signal peptide processing	3.68E-03
69	GO:0034052: positive regulation of plant-type hypersensitive response	3.68E-03
70	GO:0032543: mitochondrial translation	3.68E-03
71	GO:0006751: glutathione catabolic process	4.56E-03
72	GO:0042549: photosystem II stabilization	4.56E-03
73	GO:0016554: cytidine to uridine editing	4.56E-03
74	GO:0006655: phosphatidylglycerol biosynthetic process	4.56E-03
75	GO:0032973: amino acid export	4.56E-03
76	GO:0010190: cytochrome b6f complex assembly	4.56E-03
77	GO:0042742: defense response to bacterium	4.86E-03
78	GO:0019252: starch biosynthetic process	5.36E-03
79	GO:0010555: response to mannitol	5.49E-03
80	GO:0009955: adaxial/abaxial pattern specification	5.49E-03
81	GO:0042372: phylloquinone biosynthetic process	5.49E-03
82	GO:0009612: response to mechanical stimulus	5.49E-03
83	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.49E-03
84	GO:0009772: photosynthetic electron transport in photosystem II	6.49E-03
85	GO:0043090: amino acid import	6.49E-03
86	GO:0032508: DNA duplex unwinding	7.55E-03
87	GO:0005978: glycogen biosynthetic process	7.55E-03
88	GO:0009642: response to light intensity	7.55E-03
89	GO:0042255: ribosome assembly	7.55E-03
90	GO:0006353: DNA-templated transcription, termination	7.55E-03
91	GO:0043068: positive regulation of programmed cell death	7.55E-03
92	GO:0017004: cytochrome complex assembly	8.67E-03
93	GO:0009932: cell tip growth	8.67E-03
94	GO:0071482: cellular response to light stimulus	8.67E-03
95	GO:0006783: heme biosynthetic process	9.85E-03
96	GO:0080144: amino acid homeostasis	9.85E-03
97	GO:0009817: defense response to fungus, incompatible interaction	1.09E-02
98	GO:0005982: starch metabolic process	1.11E-02
99	GO:1900865: chloroplast RNA modification	1.11E-02
100	GO:0042761: very long-chain fatty acid biosynthetic process	1.11E-02
101	GO:0006810: transport	1.11E-02
102	GO:0009407: toxin catabolic process	1.20E-02
103	GO:0043069: negative regulation of programmed cell death	1.24E-02
104	GO:0006782: protoporphyrinogen IX biosynthetic process	1.24E-02
105	GO:0006535: cysteine biosynthetic process from serine	1.24E-02
106	GO:0006352: DNA-templated transcription, initiation	1.37E-02
107	GO:0030148: sphingolipid biosynthetic process	1.37E-02
108	GO:0009684: indoleacetic acid biosynthetic process	1.37E-02
109	GO:0010015: root morphogenesis	1.37E-02
110	GO:0009773: photosynthetic electron transport in photosystem I	1.37E-02
111	GO:0019684: photosynthesis, light reaction	1.37E-02
112	GO:0006415: translational termination	1.37E-02
113	GO:0009073: aromatic amino acid family biosynthetic process	1.37E-02
114	GO:0009637: response to blue light	1.38E-02
115	GO:0006006: glucose metabolic process	1.65E-02
116	GO:0008152: metabolic process	1.77E-02
117	GO:0010114: response to red light	1.79E-02
118	GO:0042546: cell wall biogenesis	1.86E-02
119	GO:0009636: response to toxic substance	2.01E-02
120	GO:0006636: unsaturated fatty acid biosynthetic process	2.11E-02
121	GO:0000027: ribosomal large subunit assembly	2.27E-02
122	GO:0016575: histone deacetylation	2.43E-02
123	GO:0007017: microtubule-based process	2.43E-02
124	GO:0048511: rhythmic process	2.60E-02
125	GO:0061077: chaperone-mediated protein folding	2.60E-02
126	GO:0031348: negative regulation of defense response	2.78E-02
127	GO:0009814: defense response, incompatible interaction	2.78E-02
128	GO:0035428: hexose transmembrane transport	2.78E-02
129	GO:0009793: embryo development ending in seed dormancy	2.86E-02
130	GO:0006012: galactose metabolic process	2.96E-02
131	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.96E-02
132	GO:0046686: response to cadmium ion	3.22E-02
133	GO:0070417: cellular response to cold	3.32E-02
134	GO:0009624: response to nematode	3.44E-02
135	GO:0008033: tRNA processing	3.51E-02
136	GO:0042631: cellular response to water deprivation	3.51E-02
137	GO:0009742: brassinosteroid mediated signaling pathway	3.64E-02
138	GO:0046323: glucose import	3.70E-02
139	GO:0042752: regulation of circadian rhythm	3.90E-02
140	GO:0002229: defense response to oomycetes	4.30E-02
141	GO:0000302: response to reactive oxygen species	4.30E-02
142	GO:0032502: developmental process	4.51E-02
143	GO:0030163: protein catabolic process	4.72E-02
144	GO:0009828: plant-type cell wall loosening	4.93E-02
145	GO:0009567: double fertilization forming a zygote and endosperm	4.93E-02
146	GO:0009790: embryo development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0042903: tubulin deacetylase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
11	GO:0043014: alpha-tubulin binding	0.00E+00
12	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
13	GO:0019843: rRNA binding	2.38E-21
14	GO:0003735: structural constituent of ribosome	1.81E-14
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.70E-10
16	GO:0005528: FK506 binding	3.14E-07
17	GO:0051920: peroxiredoxin activity	7.74E-06
18	GO:0016209: antioxidant activity	1.83E-05
19	GO:0016851: magnesium chelatase activity	5.93E-05
20	GO:0008200: ion channel inhibitor activity	2.30E-04
21	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.09E-04
22	GO:0000170: sphingosine hydroxylase activity	4.21E-04
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.21E-04
24	GO:0080132: fatty acid alpha-hydroxylase activity	4.21E-04
25	GO:0052631: sphingolipid delta-8 desaturase activity	4.21E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	4.21E-04
27	GO:0003839: gamma-glutamylcyclotransferase activity	9.10E-04
28	GO:0004047: aminomethyltransferase activity	9.10E-04
29	GO:0033201: alpha-1,4-glucan synthase activity	9.10E-04
30	GO:0042284: sphingolipid delta-4 desaturase activity	9.10E-04
31	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	9.10E-04
32	GO:0004614: phosphoglucomutase activity	9.10E-04
33	GO:0008967: phosphoglycolate phosphatase activity	9.10E-04
34	GO:0016491: oxidoreductase activity	1.10E-03
35	GO:0015250: water channel activity	1.17E-03
36	GO:0016168: chlorophyll binding	1.25E-03
37	GO:0004075: biotin carboxylase activity	1.48E-03
38	GO:0004751: ribose-5-phosphate isomerase activity	1.48E-03
39	GO:0030267: glyoxylate reductase (NADP) activity	1.48E-03
40	GO:0004324: ferredoxin-NADP+ reductase activity	1.48E-03
41	GO:0016531: copper chaperone activity	1.48E-03
42	GO:0004373: glycogen (starch) synthase activity	1.48E-03
43	GO:0019829: cation-transporting ATPase activity	1.48E-03
44	GO:0050734: hydroxycinnamoyltransferase activity	1.48E-03
45	GO:0004148: dihydrolipoyl dehydrogenase activity	1.48E-03
46	GO:0031409: pigment binding	2.10E-03
47	GO:0043023: ribosomal large subunit binding	2.14E-03
48	GO:0008097: 5S rRNA binding	2.14E-03
49	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.14E-03
50	GO:0048487: beta-tubulin binding	2.14E-03
51	GO:0016149: translation release factor activity, codon specific	2.14E-03
52	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.88E-03
53	GO:0046556: alpha-L-arabinofuranosidase activity	2.88E-03
54	GO:0004659: prenyltransferase activity	2.88E-03
55	GO:0001053: plastid sigma factor activity	2.88E-03
56	GO:0016836: hydro-lyase activity	2.88E-03
57	GO:0016987: sigma factor activity	2.88E-03
58	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.88E-03
59	GO:0009011: starch synthase activity	2.88E-03
60	GO:0009044: xylan 1,4-beta-xylosidase activity	2.88E-03
61	GO:0043495: protein anchor	2.88E-03
62	GO:0003989: acetyl-CoA carboxylase activity	3.68E-03
63	GO:0003959: NADPH dehydrogenase activity	3.68E-03
64	GO:0004040: amidase activity	3.68E-03
65	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.56E-03
66	GO:0004130: cytochrome-c peroxidase activity	4.56E-03
67	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.56E-03
68	GO:0004124: cysteine synthase activity	5.49E-03
69	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.49E-03
70	GO:0016762: xyloglucan:xyloglucosyl transferase activity	5.75E-03
71	GO:0004601: peroxidase activity	6.12E-03
72	GO:0043295: glutathione binding	6.49E-03
73	GO:0019899: enzyme binding	6.49E-03
74	GO:0004034: aldose 1-epimerase activity	7.55E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	7.55E-03
76	GO:0004869: cysteine-type endopeptidase inhibitor activity	7.55E-03
77	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	8.67E-03
78	GO:0005375: copper ion transmembrane transporter activity	8.67E-03
79	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.67E-03
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	9.82E-03
81	GO:0003747: translation release factor activity	9.85E-03
82	GO:0004222: metalloendopeptidase activity	1.20E-02
83	GO:0030234: enzyme regulator activity	1.24E-02
84	GO:0004864: protein phosphatase inhibitor activity	1.24E-02
85	GO:0008378: galactosyltransferase activity	1.51E-02
86	GO:0031072: heat shock protein binding	1.65E-02
87	GO:0004565: beta-galactosidase activity	1.65E-02
88	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.65E-02
89	GO:0004364: glutathione transferase activity	1.72E-02
90	GO:0008266: poly(U) RNA binding	1.80E-02
91	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.86E-02
92	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.11E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.11E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.11E-02
95	GO:0004407: histone deacetylase activity	2.27E-02
96	GO:0003690: double-stranded DNA binding	2.50E-02
97	GO:0022891: substrate-specific transmembrane transporter activity	2.96E-02
98	GO:0030570: pectate lyase activity	2.96E-02
99	GO:0003727: single-stranded RNA binding	3.14E-02
100	GO:0004650: polygalacturonase activity	3.14E-02
101	GO:0003756: protein disulfide isomerase activity	3.14E-02
102	GO:0005509: calcium ion binding	3.33E-02
103	GO:0016746: transferase activity, transferring acyl groups	3.54E-02
104	GO:0016853: isomerase activity	3.90E-02
105	GO:0005355: glucose transmembrane transporter activity	3.90E-02
106	GO:0004872: receptor activity	4.10E-02
107	GO:0004252: serine-type endopeptidase activity	4.76E-02
108	GO:0016791: phosphatase activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009344: nitrite reductase complex [NAD(P)H]	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0044391: ribosomal subunit	0.00E+00
5	GO:0009507: chloroplast	1.22E-62
6	GO:0009570: chloroplast stroma	8.00E-47
7	GO:0009941: chloroplast envelope	1.46E-33
8	GO:0009535: chloroplast thylakoid membrane	7.32E-33
9	GO:0009534: chloroplast thylakoid	1.63E-29
10	GO:0009543: chloroplast thylakoid lumen	1.25E-24
11	GO:0009579: thylakoid	1.49E-21
12	GO:0031977: thylakoid lumen	2.75E-18
13	GO:0005840: ribosome	3.40E-14
14	GO:0048046: apoplast	1.68E-08
15	GO:0009654: photosystem II oxygen evolving complex	4.19E-07
16	GO:0019898: extrinsic component of membrane	3.26E-06
17	GO:0005618: cell wall	1.80E-05
18	GO:0009505: plant-type cell wall	1.98E-05
19	GO:0010007: magnesium chelatase complex	2.73E-05
20	GO:0016020: membrane	7.85E-05
21	GO:0030095: chloroplast photosystem II	1.39E-04
22	GO:0042651: thylakoid membrane	2.56E-04
23	GO:0009533: chloroplast stromal thylakoid	3.99E-04
24	GO:0009515: granal stacked thylakoid	4.21E-04
25	GO:0009782: photosystem I antenna complex	4.21E-04
26	GO:0043674: columella	4.21E-04
27	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.21E-04
28	GO:0031969: chloroplast membrane	5.19E-04
29	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.29E-04
30	GO:0031225: anchored component of membrane	8.76E-04
31	GO:0010319: stromule	1.01E-03
32	GO:0000311: plastid large ribosomal subunit	1.32E-03
33	GO:0032040: small-subunit processome	1.32E-03
34	GO:0009509: chromoplast	1.48E-03
35	GO:0000312: plastid small ribosomal subunit	1.68E-03
36	GO:0010287: plastoglobule	1.77E-03
37	GO:0030076: light-harvesting complex	1.89E-03
38	GO:0005960: glycine cleavage complex	2.14E-03
39	GO:0015935: small ribosomal subunit	2.83E-03
40	GO:0046658: anchored component of plasma membrane	4.83E-03
41	GO:0042807: central vacuole	6.49E-03
42	GO:0009501: amyloplast	7.55E-03
43	GO:0009536: plastid	7.55E-03
44	GO:0005763: mitochondrial small ribosomal subunit	9.85E-03
45	GO:0045298: tubulin complex	9.85E-03
46	GO:0022626: cytosolic ribosome	3.36E-02
47	GO:0022625: cytosolic large ribosomal subunit	3.42E-02
48	GO:0009522: photosystem I	3.90E-02
49	GO:0009523: photosystem II	4.10E-02
50	GO:0009506: plasmodesma	4.69E-02