GO Enrichment Analysis of Co-expressed Genes with
AT5G62050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071433: cell wall repair | 0.00E+00 |
| 2 | GO:0039694: viral RNA genome replication | 0.00E+00 |
| 3 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 5 | GO:0006099: tricarboxylic acid cycle | 7.09E-08 |
| 6 | GO:0006102: isocitrate metabolic process | 2.53E-07 |
| 7 | GO:0008535: respiratory chain complex IV assembly | 3.06E-07 |
| 8 | GO:0046686: response to cadmium ion | 4.07E-06 |
| 9 | GO:0080156: mitochondrial mRNA modification | 2.28E-05 |
| 10 | GO:0006390: transcription from mitochondrial promoter | 7.39E-05 |
| 11 | GO:0006177: GMP biosynthetic process | 7.39E-05 |
| 12 | GO:0051938: L-glutamate import | 7.39E-05 |
| 13 | GO:0015760: glucose-6-phosphate transport | 7.39E-05 |
| 14 | GO:1990641: response to iron ion starvation | 7.39E-05 |
| 15 | GO:0006007: glucose catabolic process | 7.39E-05 |
| 16 | GO:2000232: regulation of rRNA processing | 7.39E-05 |
| 17 | GO:0019673: GDP-mannose metabolic process | 7.39E-05 |
| 18 | GO:0006101: citrate metabolic process | 1.77E-04 |
| 19 | GO:0043091: L-arginine import | 1.77E-04 |
| 20 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.77E-04 |
| 21 | GO:0015712: hexose phosphate transport | 1.77E-04 |
| 22 | GO:0015714: phosphoenolpyruvate transport | 2.99E-04 |
| 23 | GO:1902626: assembly of large subunit precursor of preribosome | 2.99E-04 |
| 24 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 2.99E-04 |
| 25 | GO:0035436: triose phosphate transmembrane transport | 2.99E-04 |
| 26 | GO:0042256: mature ribosome assembly | 2.99E-04 |
| 27 | GO:0033617: mitochondrial respiratory chain complex IV assembly | 4.32E-04 |
| 28 | GO:0000460: maturation of 5.8S rRNA | 5.75E-04 |
| 29 | GO:0010109: regulation of photosynthesis | 5.75E-04 |
| 30 | GO:0015713: phosphoglycerate transport | 5.75E-04 |
| 31 | GO:0006413: translational initiation | 5.85E-04 |
| 32 | GO:0009697: salicylic acid biosynthetic process | 7.29E-04 |
| 33 | GO:0006564: L-serine biosynthetic process | 7.29E-04 |
| 34 | GO:0006097: glyoxylate cycle | 7.29E-04 |
| 35 | GO:0006465: signal peptide processing | 7.29E-04 |
| 36 | GO:0009643: photosynthetic acclimation | 8.91E-04 |
| 37 | GO:0006121: mitochondrial electron transport, succinate to ubiquinone | 8.91E-04 |
| 38 | GO:0000470: maturation of LSU-rRNA | 8.91E-04 |
| 39 | GO:0016554: cytidine to uridine editing | 8.91E-04 |
| 40 | GO:1901001: negative regulation of response to salt stress | 1.06E-03 |
| 41 | GO:0000054: ribosomal subunit export from nucleus | 1.06E-03 |
| 42 | GO:0042773: ATP synthesis coupled electron transport | 1.24E-03 |
| 43 | GO:0006875: cellular metal ion homeostasis | 1.43E-03 |
| 44 | GO:0045454: cell redox homeostasis | 1.79E-03 |
| 45 | GO:0098656: anion transmembrane transport | 1.83E-03 |
| 46 | GO:0043067: regulation of programmed cell death | 2.05E-03 |
| 47 | GO:0009793: embryo development ending in seed dormancy | 2.26E-03 |
| 48 | GO:0006820: anion transport | 2.75E-03 |
| 49 | GO:0009624: response to nematode | 2.95E-03 |
| 50 | GO:0046688: response to copper ion | 3.51E-03 |
| 51 | GO:0010053: root epidermal cell differentiation | 3.51E-03 |
| 52 | GO:0034976: response to endoplasmic reticulum stress | 3.78E-03 |
| 53 | GO:0006487: protein N-linked glycosylation | 4.06E-03 |
| 54 | GO:0007010: cytoskeleton organization | 4.06E-03 |
| 55 | GO:0009790: embryo development | 4.29E-03 |
| 56 | GO:0006825: copper ion transport | 4.34E-03 |
| 57 | GO:0009651: response to salt stress | 4.34E-03 |
| 58 | GO:0003333: amino acid transmembrane transport | 4.63E-03 |
| 59 | GO:0031348: negative regulation of defense response | 4.93E-03 |
| 60 | GO:0009451: RNA modification | 5.18E-03 |
| 61 | GO:0071215: cellular response to abscisic acid stimulus | 5.23E-03 |
| 62 | GO:0009561: megagametogenesis | 5.54E-03 |
| 63 | GO:0009617: response to bacterium | 6.03E-03 |
| 64 | GO:0008033: tRNA processing | 6.18E-03 |
| 65 | GO:0010501: RNA secondary structure unwinding | 6.18E-03 |
| 66 | GO:0010118: stomatal movement | 6.18E-03 |
| 67 | GO:0009749: response to glucose | 7.19E-03 |
| 68 | GO:0006412: translation | 9.33E-03 |
| 69 | GO:0009615: response to virus | 9.74E-03 |
| 70 | GO:0048481: plant ovule development | 1.17E-02 |
| 71 | GO:0048767: root hair elongation | 1.22E-02 |
| 72 | GO:0010043: response to zinc ion | 1.30E-02 |
| 73 | GO:0045087: innate immune response | 1.39E-02 |
| 74 | GO:0009853: photorespiration | 1.39E-02 |
| 75 | GO:0048364: root development | 1.50E-02 |
| 76 | GO:0009744: response to sucrose | 1.66E-02 |
| 77 | GO:0009409: response to cold | 1.73E-02 |
| 78 | GO:0000154: rRNA modification | 1.80E-02 |
| 79 | GO:0006855: drug transmembrane transport | 1.85E-02 |
| 80 | GO:0006364: rRNA processing | 2.05E-02 |
| 81 | GO:0006486: protein glycosylation | 2.05E-02 |
| 82 | GO:0006417: regulation of translation | 2.21E-02 |
| 83 | GO:0006096: glycolytic process | 2.31E-02 |
| 84 | GO:0048316: seed development | 2.37E-02 |
| 85 | GO:0009555: pollen development | 2.55E-02 |
| 86 | GO:0009845: seed germination | 3.27E-02 |
| 87 | GO:0006457: protein folding | 3.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 2 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 3 | GO:0004449: isocitrate dehydrogenase (NAD+) activity | 2.80E-06 |
| 4 | GO:0008446: GDP-mannose 4,6-dehydratase activity | 7.39E-05 |
| 5 | GO:0003746: translation elongation factor activity | 8.94E-05 |
| 6 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.08E-04 |
| 7 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.77E-04 |
| 8 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.77E-04 |
| 9 | GO:0003938: IMP dehydrogenase activity | 1.77E-04 |
| 10 | GO:0003994: aconitate hydratase activity | 1.77E-04 |
| 11 | GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity | 1.77E-04 |
| 12 | GO:0015152: glucose-6-phosphate transmembrane transporter activity | 1.77E-04 |
| 13 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.77E-04 |
| 14 | GO:0048531: beta-1,3-galactosyltransferase activity | 1.77E-04 |
| 15 | GO:0005507: copper ion binding | 2.74E-04 |
| 16 | GO:0071917: triose-phosphate transmembrane transporter activity | 2.99E-04 |
| 17 | GO:0016531: copper chaperone activity | 2.99E-04 |
| 18 | GO:0004108: citrate (Si)-synthase activity | 4.32E-04 |
| 19 | GO:0043023: ribosomal large subunit binding | 4.32E-04 |
| 20 | GO:0015189: L-lysine transmembrane transporter activity | 4.32E-04 |
| 21 | GO:0015181: arginine transmembrane transporter activity | 4.32E-04 |
| 22 | GO:0015120: phosphoglycerate transmembrane transporter activity | 5.75E-04 |
| 23 | GO:0005313: L-glutamate transmembrane transporter activity | 5.75E-04 |
| 24 | GO:0005496: steroid binding | 7.29E-04 |
| 25 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 7.29E-04 |
| 26 | GO:0000104: succinate dehydrogenase activity | 7.29E-04 |
| 27 | GO:0003743: translation initiation factor activity | 7.75E-04 |
| 28 | GO:0005524: ATP binding | 1.17E-03 |
| 29 | GO:0003697: single-stranded DNA binding | 1.22E-03 |
| 30 | GO:0030515: snoRNA binding | 1.24E-03 |
| 31 | GO:0043022: ribosome binding | 1.43E-03 |
| 32 | GO:0015288: porin activity | 1.43E-03 |
| 33 | GO:0008135: translation factor activity, RNA binding | 1.63E-03 |
| 34 | GO:0008308: voltage-gated anion channel activity | 1.63E-03 |
| 35 | GO:0005525: GTP binding | 1.84E-03 |
| 36 | GO:0051287: NAD binding | 1.88E-03 |
| 37 | GO:0015174: basic amino acid transmembrane transporter activity | 2.05E-03 |
| 38 | GO:0004129: cytochrome-c oxidase activity | 2.51E-03 |
| 39 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.00E-03 |
| 40 | GO:0051536: iron-sulfur cluster binding | 4.06E-03 |
| 41 | GO:0003954: NADH dehydrogenase activity | 4.06E-03 |
| 42 | GO:0003729: mRNA binding | 4.61E-03 |
| 43 | GO:0000166: nucleotide binding | 4.81E-03 |
| 44 | GO:0015297: antiporter activity | 4.83E-03 |
| 45 | GO:0003756: protein disulfide isomerase activity | 5.54E-03 |
| 46 | GO:0003723: RNA binding | 6.03E-03 |
| 47 | GO:0003713: transcription coactivator activity | 6.51E-03 |
| 48 | GO:0010181: FMN binding | 6.84E-03 |
| 49 | GO:0008137: NADH dehydrogenase (ubiquinone) activity | 7.53E-03 |
| 50 | GO:0005200: structural constituent of cytoskeleton | 8.98E-03 |
| 51 | GO:0016597: amino acid binding | 9.36E-03 |
| 52 | GO:0004004: ATP-dependent RNA helicase activity | 1.09E-02 |
| 53 | GO:0015238: drug transmembrane transporter activity | 1.22E-02 |
| 54 | GO:0050897: cobalt ion binding | 1.30E-02 |
| 55 | GO:0030145: manganese ion binding | 1.30E-02 |
| 56 | GO:0009055: electron carrier activity | 1.54E-02 |
| 57 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.76E-02 |
| 58 | GO:0043621: protein self-association | 1.76E-02 |
| 59 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.05E-02 |
| 60 | GO:0015171: amino acid transmembrane transporter activity | 2.21E-02 |
| 61 | GO:0051082: unfolded protein binding | 2.64E-02 |
| 62 | GO:0015035: protein disulfide oxidoreductase activity | 2.69E-02 |
| 63 | GO:0008026: ATP-dependent helicase activity | 2.75E-02 |
| 64 | GO:0004386: helicase activity | 2.81E-02 |
| 65 | GO:0003735: structural constituent of ribosome | 2.81E-02 |
| 66 | GO:0005515: protein binding | 3.09E-02 |
| 67 | GO:0016740: transferase activity | 3.11E-02 |
| 68 | GO:0016829: lyase activity | 3.27E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0019034: viral replication complex | 0.00E+00 |
| 3 | GO:0005739: mitochondrion | 7.74E-13 |
| 4 | GO:0034245: mitochondrial DNA-directed RNA polymerase complex | 7.39E-05 |
| 5 | GO:0070545: PeBoW complex | 1.77E-04 |
| 6 | GO:0005730: nucleolus | 2.87E-04 |
| 7 | GO:0005829: cytosol | 3.37E-04 |
| 8 | GO:0005746: mitochondrial respiratory chain | 7.29E-04 |
| 9 | GO:0008250: oligosaccharyltransferase complex | 7.29E-04 |
| 10 | GO:0031428: box C/D snoRNP complex | 8.91E-04 |
| 11 | GO:0005762: mitochondrial large ribosomal subunit | 1.06E-03 |
| 12 | GO:0030687: preribosome, large subunit precursor | 1.24E-03 |
| 13 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 1.43E-03 |
| 14 | GO:0031969: chloroplast membrane | 1.43E-03 |
| 15 | GO:0005618: cell wall | 1.59E-03 |
| 16 | GO:0000326: protein storage vacuole | 1.63E-03 |
| 17 | GO:0046930: pore complex | 1.63E-03 |
| 18 | GO:0031090: organelle membrane | 1.83E-03 |
| 19 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.51E-03 |
| 20 | GO:0032040: small-subunit processome | 2.75E-03 |
| 21 | GO:0009536: plastid | 3.44E-03 |
| 22 | GO:0043234: protein complex | 3.78E-03 |
| 23 | GO:0005758: mitochondrial intermembrane space | 4.06E-03 |
| 24 | GO:0045271: respiratory chain complex I | 4.34E-03 |
| 25 | GO:0005759: mitochondrial matrix | 4.61E-03 |
| 26 | GO:0005741: mitochondrial outer membrane | 4.63E-03 |
| 27 | GO:0009941: chloroplast envelope | 7.80E-03 |
| 28 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 8.58E-03 |
| 29 | GO:0005788: endoplasmic reticulum lumen | 1.01E-02 |
| 30 | GO:0015934: large ribosomal subunit | 1.30E-02 |
| 31 | GO:0005743: mitochondrial inner membrane | 1.33E-02 |
| 32 | GO:0005783: endoplasmic reticulum | 1.55E-02 |
| 33 | GO:0005774: vacuolar membrane | 1.65E-02 |
| 34 | GO:0009506: plasmodesma | 1.67E-02 |
| 35 | GO:0005856: cytoskeleton | 1.80E-02 |
| 36 | GO:0031966: mitochondrial membrane | 1.95E-02 |
| 37 | GO:0005747: mitochondrial respiratory chain complex I | 2.37E-02 |
| 38 | GO:0005834: heterotrimeric G-protein complex | 2.42E-02 |
| 39 | GO:0005654: nucleoplasm | 3.04E-02 |
| 40 | GO:0009507: chloroplast | 3.41E-02 |
| 41 | GO:0046658: anchored component of plasma membrane | 4.75E-02 |