Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G60640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
2GO:0048227: plasma membrane to endosome transport0.00E+00
3GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
6GO:0032780: negative regulation of ATPase activity0.00E+00
7GO:0006482: protein demethylation0.00E+00
8GO:0046292: formaldehyde metabolic process0.00E+00
9GO:0006069: ethanol oxidation0.00E+00
10GO:0001676: long-chain fatty acid metabolic process2.51E-05
11GO:1900425: negative regulation of defense response to bacterium1.05E-04
12GO:0006631: fatty acid metabolic process1.34E-04
13GO:0006605: protein targeting2.41E-04
14GO:0006772: thiamine metabolic process2.57E-04
15GO:0035266: meristem growth2.57E-04
16GO:0007292: female gamete generation2.57E-04
17GO:0006805: xenobiotic metabolic process2.57E-04
18GO:0080173: male-female gamete recognition during double fertilization2.57E-04
19GO:0080136: priming of cellular response to stress2.57E-04
20GO:0042742: defense response to bacterium2.69E-04
21GO:0043069: negative regulation of programmed cell death4.99E-04
22GO:0019441: tryptophan catabolic process to kynurenine5.68E-04
23GO:0097054: L-glutamate biosynthetic process5.68E-04
24GO:0002221: pattern recognition receptor signaling pathway5.68E-04
25GO:1905182: positive regulation of urease activity5.68E-04
26GO:0019521: D-gluconate metabolic process5.68E-04
27GO:0006101: citrate metabolic process5.68E-04
28GO:1902000: homogentisate catabolic process5.68E-04
29GO:0030010: establishment of cell polarity5.68E-04
30GO:0051788: response to misfolded protein5.68E-04
31GO:0008219: cell death6.64E-04
32GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway9.22E-04
33GO:0009072: aromatic amino acid family metabolic process9.22E-04
34GO:0060968: regulation of gene silencing9.22E-04
35GO:1900140: regulation of seedling development9.22E-04
36GO:0010359: regulation of anion channel activity9.22E-04
37GO:0061158: 3'-UTR-mediated mRNA destabilization9.22E-04
38GO:0090351: seedling development9.38E-04
39GO:0010150: leaf senescence1.04E-03
40GO:0000162: tryptophan biosynthetic process1.04E-03
41GO:0007166: cell surface receptor signaling pathway1.27E-03
42GO:0006624: vacuolar protein processing1.32E-03
43GO:0048194: Golgi vesicle budding1.32E-03
44GO:0007231: osmosensory signaling pathway1.32E-03
45GO:2001289: lipid X metabolic process1.32E-03
46GO:0070301: cellular response to hydrogen peroxide1.32E-03
47GO:0006537: glutamate biosynthetic process1.32E-03
48GO:0072334: UDP-galactose transmembrane transport1.32E-03
49GO:0009399: nitrogen fixation1.32E-03
50GO:0009617: response to bacterium1.36E-03
51GO:0080142: regulation of salicylic acid biosynthetic process1.76E-03
52GO:0006878: cellular copper ion homeostasis1.76E-03
53GO:0006542: glutamine biosynthetic process1.76E-03
54GO:0019676: ammonia assimilation cycle1.76E-03
55GO:0060548: negative regulation of cell death1.76E-03
56GO:0048830: adventitious root development1.76E-03
57GO:0033500: carbohydrate homeostasis1.76E-03
58GO:1902584: positive regulation of response to water deprivation1.76E-03
59GO:2000038: regulation of stomatal complex development1.76E-03
60GO:0010363: regulation of plant-type hypersensitive response1.76E-03
61GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA1.76E-03
62GO:0010188: response to microbial phytotoxin1.76E-03
63GO:0051603: proteolysis involved in cellular protein catabolic process1.86E-03
64GO:0005513: detection of calcium ion2.25E-03
65GO:0006097: glyoxylate cycle2.25E-03
66GO:0009229: thiamine diphosphate biosynthetic process2.25E-03
67GO:0030308: negative regulation of cell growth2.25E-03
68GO:0006090: pyruvate metabolic process2.25E-03
69GO:0045927: positive regulation of growth2.25E-03
70GO:0006564: L-serine biosynthetic process2.25E-03
71GO:0006662: glycerol ether metabolic process2.26E-03
72GO:0009620: response to fungus2.48E-03
73GO:0006468: protein phosphorylation2.66E-03
74GO:0002238: response to molecule of fungal origin2.77E-03
75GO:0006014: D-ribose metabolic process2.77E-03
76GO:0035435: phosphate ion transmembrane transport2.77E-03
77GO:0009759: indole glucosinolate biosynthetic process2.77E-03
78GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.77E-03
79GO:0006751: glutathione catabolic process2.77E-03
80GO:0048827: phyllome development2.77E-03
81GO:0048232: male gamete generation2.77E-03
82GO:0043248: proteasome assembly2.77E-03
83GO:1902456: regulation of stomatal opening2.77E-03
84GO:0010358: leaf shaping2.77E-03
85GO:0010193: response to ozone2.79E-03
86GO:0010200: response to chitin2.95E-03
87GO:0007264: small GTPase mediated signal transduction2.98E-03
88GO:0010189: vitamin E biosynthetic process3.33E-03
89GO:0010555: response to mannitol3.33E-03
90GO:2000037: regulation of stomatal complex patterning3.33E-03
91GO:2000067: regulation of root morphogenesis3.33E-03
92GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.33E-03
93GO:0009612: response to mechanical stimulus3.33E-03
94GO:0034389: lipid particle organization3.33E-03
95GO:0045454: cell redox homeostasis3.69E-03
96GO:0050790: regulation of catalytic activity3.93E-03
97GO:0046470: phosphatidylcholine metabolic process3.93E-03
98GO:0043090: amino acid import3.93E-03
99GO:0080186: developmental vegetative growth3.93E-03
100GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.93E-03
101GO:1900150: regulation of defense response to fungus4.56E-03
102GO:0006102: isocitrate metabolic process4.56E-03
103GO:0016559: peroxisome fission4.56E-03
104GO:0043068: positive regulation of programmed cell death4.56E-03
105GO:0009819: drought recovery4.56E-03
106GO:0010078: maintenance of root meristem identity4.56E-03
107GO:0009651: response to salt stress5.05E-03
108GO:0009408: response to heat5.07E-03
109GO:0009808: lignin metabolic process5.22E-03
110GO:0006002: fructose 6-phosphate metabolic process5.22E-03
111GO:0006075: (1->3)-beta-D-glucan biosynthetic process5.22E-03
112GO:0009880: embryonic pattern specification5.22E-03
113GO:0010120: camalexin biosynthetic process5.22E-03
114GO:0007186: G-protein coupled receptor signaling pathway5.22E-03
115GO:0006526: arginine biosynthetic process5.22E-03
116GO:0015031: protein transport5.36E-03
117GO:0006499: N-terminal protein myristoylation5.79E-03
118GO:0009821: alkaloid biosynthetic process5.92E-03
119GO:0051865: protein autoubiquitination5.92E-03
120GO:0090333: regulation of stomatal closure5.92E-03
121GO:0006098: pentose-phosphate shunt5.92E-03
122GO:0010119: regulation of stomatal movement6.07E-03
123GO:0006470: protein dephosphorylation6.62E-03
124GO:0008202: steroid metabolic process6.64E-03
125GO:0042761: very long-chain fatty acid biosynthetic process6.64E-03
126GO:0048268: clathrin coat assembly6.64E-03
127GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.64E-03
128GO:0045087: innate immune response6.65E-03
129GO:0034599: cellular response to oxidative stress6.96E-03
130GO:0048829: root cap development7.40E-03
131GO:0009641: shade avoidance7.40E-03
132GO:0000103: sulfate assimilation7.40E-03
133GO:0009750: response to fructose8.19E-03
134GO:0009684: indoleacetic acid biosynthetic process8.19E-03
135GO:0010015: root morphogenesis8.19E-03
136GO:0072593: reactive oxygen species metabolic process8.19E-03
137GO:0043085: positive regulation of catalytic activity8.19E-03
138GO:0009682: induced systemic resistance8.19E-03
139GO:0052544: defense response by callose deposition in cell wall8.19E-03
140GO:0042542: response to hydrogen peroxide8.25E-03
141GO:0055114: oxidation-reduction process8.98E-03
142GO:0000266: mitochondrial fission9.00E-03
143GO:0012501: programmed cell death9.00E-03
144GO:0009636: response to toxic substance9.66E-03
145GO:0006807: nitrogen compound metabolic process9.85E-03
146GO:0010229: inflorescence development9.85E-03
147GO:0009933: meristem structural organization1.07E-02
148GO:0006970: response to osmotic stress1.07E-02
149GO:0007034: vacuolar transport1.07E-02
150GO:0006508: proteolysis1.12E-02
151GO:0006979: response to oxidative stress1.12E-02
152GO:0009738: abscisic acid-activated signaling pathway1.15E-02
153GO:0070588: calcium ion transmembrane transport1.16E-02
154GO:0010053: root epidermal cell differentiation1.16E-02
155GO:0006071: glycerol metabolic process1.25E-02
156GO:0009611: response to wounding1.25E-02
157GO:0048367: shoot system development1.42E-02
158GO:0009626: plant-type hypersensitive response1.46E-02
159GO:0061077: chaperone-mediated protein folding1.55E-02
160GO:0006952: defense response1.62E-02
161GO:0007005: mitochondrion organization1.65E-02
162GO:0030433: ubiquitin-dependent ERAD pathway1.65E-02
163GO:0006012: galactose metabolic process1.76E-02
164GO:0010091: trichome branching1.86E-02
165GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.97E-02
166GO:0042147: retrograde transport, endosome to Golgi1.97E-02
167GO:0042391: regulation of membrane potential2.09E-02
168GO:0042631: cellular response to water deprivation2.09E-02
169GO:0008360: regulation of cell shape2.20E-02
170GO:0071472: cellular response to salt stress2.20E-02
171GO:0048364: root development2.21E-02
172GO:0048544: recognition of pollen2.32E-02
173GO:0046686: response to cadmium ion2.36E-02
174GO:0009790: embryo development2.42E-02
175GO:0019252: starch biosynthetic process2.43E-02
176GO:0006623: protein targeting to vacuole2.43E-02
177GO:0009749: response to glucose2.43E-02
178GO:0010183: pollen tube guidance2.43E-02
179GO:0002229: defense response to oomycetes2.56E-02
180GO:0000302: response to reactive oxygen species2.56E-02
181GO:0010583: response to cyclopentenone2.68E-02
182GO:0050832: defense response to fungus2.73E-02
183GO:0006914: autophagy2.93E-02
184GO:0006464: cellular protein modification process2.93E-02
185GO:0010286: heat acclimation3.06E-02
186GO:0051607: defense response to virus3.19E-02
187GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.20E-02
188GO:0009615: response to virus3.32E-02
189GO:0009607: response to biotic stimulus3.46E-02
190GO:0042128: nitrate assimilation3.59E-02
191GO:0009737: response to abscisic acid3.96E-02
192GO:0048481: plant ovule development4.01E-02
193GO:0010311: lateral root formation4.16E-02
194GO:0009826: unidimensional cell growth4.26E-02
195GO:0009407: toxin catabolic process4.30E-02
196GO:0010043: response to zinc ion4.45E-02
197GO:0048527: lateral root development4.45E-02
198GO:0006865: amino acid transport4.60E-02
199GO:0006099: tricarboxylic acid cycle4.90E-02
RankGO TermAdjusted P value
1GO:0051723: protein methylesterase activity0.00E+00
2GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
3GO:0008777: acetylornithine deacetylase activity0.00E+00
4GO:0042030: ATPase inhibitor activity0.00E+00
5GO:0016504: peptidase activator activity0.00E+00
6GO:0016034: maleylacetoacetate isomerase activity0.00E+00
7GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
8GO:0050342: tocopherol O-methyltransferase activity0.00E+00
9GO:0051670: inulinase activity0.00E+00
10GO:0050242: pyruvate, phosphate dikinase activity0.00E+00
11GO:0015930: glutamate synthase activity0.00E+00
12GO:0070577: lysine-acetylated histone binding0.00E+00
13GO:0005524: ATP binding1.55E-06
14GO:0102391: decanoate--CoA ligase activity2.20E-06
15GO:0004467: long-chain fatty acid-CoA ligase activity3.56E-06
16GO:0005093: Rab GDP-dissociation inhibitor activity1.11E-05
17GO:0005515: protein binding5.73E-05
18GO:0004012: phospholipid-translocating ATPase activity1.45E-04
19GO:0005509: calcium ion binding2.17E-04
20GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.57E-04
21GO:0019786: Atg8-specific protease activity2.57E-04
22GO:0016041: glutamate synthase (ferredoxin) activity2.57E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.57E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.57E-04
25GO:0051669: fructan beta-fructosidase activity2.57E-04
26GO:0004788: thiamine diphosphokinase activity2.57E-04
27GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.57E-04
28GO:0031219: levanase activity2.57E-04
29GO:0005516: calmodulin binding5.09E-04
30GO:0047209: coniferyl-alcohol glucosyltransferase activity5.68E-04
31GO:0019779: Atg8 activating enzyme activity5.68E-04
32GO:0004566: beta-glucuronidase activity5.68E-04
33GO:0004617: phosphoglycerate dehydrogenase activity5.68E-04
34GO:0003994: aconitate hydratase activity5.68E-04
35GO:0019172: glyoxalase III activity5.68E-04
36GO:0004061: arylformamidase activity5.68E-04
37GO:0015036: disulfide oxidoreductase activity5.68E-04
38GO:0005096: GTPase activator activity7.06E-04
39GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.47E-04
40GO:0004022: alcohol dehydrogenase (NAD) activity7.47E-04
41GO:0031683: G-protein beta/gamma-subunit complex binding9.22E-04
42GO:0016805: dipeptidase activity9.22E-04
43GO:0001664: G-protein coupled receptor binding9.22E-04
44GO:0016151: nickel cation binding9.22E-04
45GO:0008430: selenium binding9.22E-04
46GO:0005047: signal recognition particle binding9.22E-04
47GO:0016174: NAD(P)H oxidase activity9.22E-04
48GO:0003840: gamma-glutamyltransferase activity9.22E-04
49GO:0036374: glutathione hydrolase activity9.22E-04
50GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.39E-04
51GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.32E-03
52GO:0004301: epoxide hydrolase activity1.76E-03
53GO:0070628: proteasome binding1.76E-03
54GO:0019776: Atg8 ligase activity1.76E-03
55GO:0047134: protein-disulfide reductase activity1.95E-03
56GO:0005496: steroid binding2.25E-03
57GO:0031386: protein tag2.25E-03
58GO:0051538: 3 iron, 4 sulfur cluster binding2.25E-03
59GO:0004356: glutamate-ammonia ligase activity2.25E-03
60GO:0005459: UDP-galactose transmembrane transporter activity2.25E-03
61GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.25E-03
62GO:0004791: thioredoxin-disulfide reductase activity2.43E-03
63GO:0016301: kinase activity2.44E-03
64GO:0036402: proteasome-activating ATPase activity2.77E-03
65GO:0031593: polyubiquitin binding2.77E-03
66GO:0015035: protein disulfide oxidoreductase activity2.89E-03
67GO:0004197: cysteine-type endopeptidase activity2.98E-03
68GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.18E-03
69GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.33E-03
70GO:0004747: ribokinase activity3.33E-03
71GO:0016597: amino acid binding3.80E-03
72GO:0004620: phospholipase activity3.93E-03
73GO:0008235: metalloexopeptidase activity3.93E-03
74GO:0003872: 6-phosphofructokinase activity3.93E-03
75GO:0008865: fructokinase activity4.56E-03
76GO:0004714: transmembrane receptor protein tyrosine kinase activity4.56E-03
77GO:0004034: aldose 1-epimerase activity4.56E-03
78GO:0004683: calmodulin-dependent protein kinase activity4.74E-03
79GO:0003924: GTPase activity5.07E-03
80GO:0008142: oxysterol binding5.22E-03
81GO:0003843: 1,3-beta-D-glucan synthase activity5.22E-03
82GO:0004630: phospholipase D activity5.22E-03
83GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.22E-03
84GO:0008889: glycerophosphodiester phosphodiesterase activity5.92E-03
85GO:0016844: strictosidine synthase activity6.64E-03
86GO:0004672: protein kinase activity7.10E-03
87GO:0005545: 1-phosphatidylinositol binding7.40E-03
88GO:0004713: protein tyrosine kinase activity7.40E-03
89GO:0008794: arsenate reductase (glutaredoxin) activity8.19E-03
90GO:0004177: aminopeptidase activity8.19E-03
91GO:0004364: glutathione transferase activity8.25E-03
92GO:0005315: inorganic phosphate transmembrane transporter activity9.85E-03
93GO:0005262: calcium channel activity9.85E-03
94GO:0005388: calcium-transporting ATPase activity9.85E-03
95GO:0016887: ATPase activity9.86E-03
96GO:0004175: endopeptidase activity1.07E-02
97GO:0004190: aspartic-type endopeptidase activity1.16E-02
98GO:0030552: cAMP binding1.16E-02
99GO:0030553: cGMP binding1.16E-02
100GO:0017025: TBP-class protein binding1.16E-02
101GO:0016298: lipase activity1.20E-02
102GO:0008234: cysteine-type peptidase activity1.29E-02
103GO:0003954: NADH dehydrogenase activity1.35E-02
104GO:0005528: FK506 binding1.35E-02
105GO:0005216: ion channel activity1.45E-02
106GO:0004298: threonine-type endopeptidase activity1.55E-02
107GO:0033612: receptor serine/threonine kinase binding1.55E-02
108GO:0004707: MAP kinase activity1.55E-02
109GO:0016491: oxidoreductase activity1.77E-02
110GO:0004722: protein serine/threonine phosphatase activity1.81E-02
111GO:0003727: single-stranded RNA binding1.86E-02
112GO:0005507: copper ion binding2.06E-02
113GO:0005249: voltage-gated potassium channel activity2.09E-02
114GO:0030551: cyclic nucleotide binding2.09E-02
115GO:0030276: clathrin binding2.20E-02
116GO:0001085: RNA polymerase II transcription factor binding2.20E-02
117GO:0016853: isomerase activity2.32E-02
118GO:0005525: GTP binding2.55E-02
119GO:0008237: metallopeptidase activity3.06E-02
120GO:0008483: transaminase activity3.06E-02
121GO:0009931: calcium-dependent protein serine/threonine kinase activity3.59E-02
122GO:0000287: magnesium ion binding4.34E-02
123GO:0004601: peroxidase activity4.42E-02
124GO:0030145: manganese ion binding4.45E-02
125GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.45E-02
RankGO TermAdjusted P value
1GO:0005785: signal recognition particle receptor complex0.00E+00
2GO:0019822: P4 peroxisome0.00E+00
3GO:0005886: plasma membrane2.07E-08
4GO:0005829: cytosol1.42E-07
5GO:0005773: vacuole2.69E-05
6GO:0005777: peroxisome5.21E-05
7GO:0005783: endoplasmic reticulum9.57E-05
8GO:0031314: extrinsic component of mitochondrial inner membrane5.68E-04
9GO:0031304: intrinsic component of mitochondrial inner membrane5.68E-04
10GO:0005623: cell6.68E-04
11GO:0030139: endocytic vesicle9.22E-04
12GO:0046861: glyoxysomal membrane9.22E-04
13GO:0031902: late endosome membrane1.10E-03
14GO:0005775: vacuolar lumen1.32E-03
15GO:0000323: lytic vacuole1.32E-03
16GO:0005839: proteasome core complex1.39E-03
17GO:0005776: autophagosome1.76E-03
18GO:0000502: proteasome complex1.78E-03
19GO:0030136: clathrin-coated vesicle1.95E-03
20GO:0005945: 6-phosphofructokinase complex2.25E-03
21GO:0000164: protein phosphatase type 1 complex2.25E-03
22GO:0030904: retromer complex2.77E-03
23GO:0005618: cell wall2.81E-03
24GO:0031597: cytosolic proteasome complex3.33E-03
25GO:0030173: integral component of Golgi membrane3.33E-03
26GO:0031595: nuclear proteasome complex3.93E-03
27GO:0000421: autophagosome membrane4.56E-03
28GO:0000148: 1,3-beta-D-glucan synthase complex5.22E-03
29GO:0009514: glyoxysome5.22E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.22E-03
31GO:0005811: lipid particle5.22E-03
32GO:0008540: proteasome regulatory particle, base subcomplex6.64E-03
33GO:0017119: Golgi transport complex7.40E-03
34GO:0005789: endoplasmic reticulum membrane7.67E-03
35GO:0005765: lysosomal membrane8.19E-03
36GO:0009570: chloroplast stroma1.00E-02
37GO:0005764: lysosome1.07E-02
38GO:0030176: integral component of endoplasmic reticulum membrane1.16E-02
39GO:0016021: integral component of membrane1.25E-02
40GO:0005905: clathrin-coated pit1.55E-02
41GO:0005741: mitochondrial outer membrane1.55E-02
42GO:0031410: cytoplasmic vesicle1.65E-02
43GO:0016020: membrane1.71E-02
44GO:0019898: extrinsic component of membrane2.43E-02
45GO:0009504: cell plate2.43E-02
46GO:0071944: cell periphery2.80E-02
47GO:0005778: peroxisomal membrane3.06E-02
48GO:0005887: integral component of plasma membrane3.08E-02
49GO:0000932: P-body3.32E-02
50GO:0030529: intracellular ribonucleoprotein complex3.32E-02
51GO:0005667: transcription factor complex3.59E-02
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Gene type



Gene DE type