co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G60390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
2	GO:0080056: petal vascular tissue pattern formation	0.00E+00
3	GO:0045047: protein targeting to ER	0.00E+00
4	GO:0071731: response to nitric oxide	0.00E+00
5	GO:0031564: transcription antitermination	0.00E+00
6	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
7	GO:1990258: histone glutamine methylation	0.00E+00
8	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
9	GO:0019307: mannose biosynthetic process	0.00E+00
10	GO:0072321: chaperone-mediated protein transport	0.00E+00
11	GO:0006412: translation	6.40E-18
12	GO:0042254: ribosome biogenesis	2.27E-14
13	GO:0046686: response to cadmium ion	4.21E-08
14	GO:0006364: rRNA processing	7.99E-08
15	GO:0009651: response to salt stress	1.08E-06
16	GO:0031167: rRNA methylation	4.94E-06
17	GO:0001510: RNA methylation	2.60E-05
18	GO:0051775: response to redox state	5.18E-05
19	GO:0006820: anion transport	6.74E-05
20	GO:0006626: protein targeting to mitochondrion	7.84E-05
21	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.27E-04
22	GO:0007051: spindle organization	1.27E-04
23	GO:0015865: purine nucleotide transport	1.27E-04
24	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.27E-04
25	GO:0045041: protein import into mitochondrial intermembrane space	1.27E-04
26	GO:0000027: ribosomal large subunit assembly	1.30E-04
27	GO:0007005: mitochondrion organization	1.77E-04
28	GO:0045039: protein import into mitochondrial inner membrane	2.17E-04
29	GO:0006013: mannose metabolic process	2.17E-04
30	GO:1902626: assembly of large subunit precursor of preribosome	2.17E-04
31	GO:0008033: tRNA processing	2.50E-04
32	GO:0010501: RNA secondary structure unwinding	2.50E-04
33	GO:0070301: cellular response to hydrogen peroxide	3.17E-04
34	GO:0051085: chaperone mediated protein folding requiring cofactor	3.17E-04
35	GO:0006241: CTP biosynthetic process	3.17E-04
36	GO:0046902: regulation of mitochondrial membrane permeability	3.17E-04
37	GO:0007276: gamete generation	3.17E-04
38	GO:0006165: nucleoside diphosphate phosphorylation	3.17E-04
39	GO:0006228: UTP biosynthetic process	3.17E-04
40	GO:0051131: chaperone-mediated protein complex assembly	3.17E-04
41	GO:0006986: response to unfolded protein	3.17E-04
42	GO:0009298: GDP-mannose biosynthetic process	3.17E-04
43	GO:0006183: GTP biosynthetic process	4.24E-04
44	GO:0042273: ribosomal large subunit biogenesis	4.24E-04
45	GO:0006405: RNA export from nucleus	5.39E-04
46	GO:0000741: karyogamy	6.60E-04
47	GO:0000060: protein import into nucleus, translocation	6.60E-04
48	GO:0042026: protein refolding	7.87E-04
49	GO:0006458: 'de novo' protein folding	7.87E-04
50	GO:0000082: G1/S transition of mitotic cell cycle	9.18E-04
51	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	9.18E-04
52	GO:0009744: response to sucrose	9.96E-04
53	GO:0006605: protein targeting	1.06E-03
54	GO:0000028: ribosomal small subunit assembly	1.06E-03
55	GO:0009408: response to heat	1.29E-03
56	GO:0098656: anion transmembrane transport	1.35E-03
57	GO:0007338: single fertilization	1.35E-03
58	GO:0006096: glycolytic process	1.56E-03
59	GO:0010162: seed dormancy process	1.67E-03
60	GO:0010588: cotyledon vascular tissue pattern formation	2.19E-03
61	GO:0006094: gluconeogenesis	2.19E-03
62	GO:0048467: gynoecium development	2.38E-03
63	GO:0019853: L-ascorbic acid biosynthetic process	2.56E-03
64	GO:0030150: protein import into mitochondrial matrix	2.96E-03
65	GO:0009944: polarity specification of adaxial/abaxial axis	2.96E-03
66	GO:0006487: protein N-linked glycosylation	2.96E-03
67	GO:0006413: translational initiation	2.97E-03
68	GO:0051302: regulation of cell division	3.16E-03
69	GO:0061077: chaperone-mediated protein folding	3.37E-03
70	GO:0006457: protein folding	3.68E-03
71	GO:0009294: DNA mediated transformation	3.80E-03
72	GO:0051028: mRNA transport	4.26E-03
73	GO:0006414: translational elongation	4.40E-03
74	GO:0000413: protein peptidyl-prolyl isomerization	4.49E-03
75	GO:0006606: protein import into nucleus	4.49E-03
76	GO:0010154: fruit development	4.72E-03
77	GO:0010305: leaf vascular tissue pattern formation	4.72E-03
78	GO:0010197: polar nucleus fusion	4.72E-03
79	GO:0015986: ATP synthesis coupled proton transport	4.96E-03
80	GO:0032502: developmental process	5.71E-03
81	GO:0009567: double fertilization forming a zygote and endosperm	6.23E-03
82	GO:0016049: cell growth	8.17E-03
83	GO:0006811: ion transport	9.06E-03
84	GO:0009631: cold acclimation	9.36E-03
85	GO:0048527: lateral root development	9.36E-03
86	GO:0010043: response to zinc ion	9.36E-03
87	GO:0009409: response to cold	9.53E-03
88	GO:0006839: mitochondrial transport	1.09E-02
89	GO:0042542: response to hydrogen peroxide	1.16E-02
90	GO:0008283: cell proliferation	1.19E-02
91	GO:0000154: rRNA modification	1.30E-02
92	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.37E-02
93	GO:0009846: pollen germination	1.40E-02
94	GO:0009735: response to cytokinin	1.46E-02
95	GO:0010224: response to UV-B	1.51E-02
96	GO:0048316: seed development	1.70E-02
97	GO:0048367: shoot system development	1.70E-02
98	GO:0009553: embryo sac development	1.85E-02
99	GO:0055085: transmembrane transport	2.03E-02
100	GO:0006511: ubiquitin-dependent protein catabolic process	2.17E-02
101	GO:0009845: seed germination	2.35E-02
102	GO:0009790: embryo development	2.48E-02
103	GO:0010468: regulation of gene expression	3.17E-02
104	GO:0009617: response to bacterium	3.17E-02
105	GO:0006970: response to osmotic stress	4.02E-02
106	GO:0009723: response to ethylene	4.23E-02
107	GO:0048366: leaf development	4.28E-02
108	GO:0006810: transport	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0004615: phosphomannomutase activity	0.00E+00
2	GO:0001072: transcription antitermination factor activity, RNA binding	0.00E+00
3	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
4	GO:0016018: cyclosporin A binding	0.00E+00
5	GO:0003735: structural constituent of ribosome	1.06E-21
6	GO:0005507: copper ion binding	4.75E-11
7	GO:0030515: snoRNA binding	6.93E-08
8	GO:0008649: rRNA methyltransferase activity	6.25E-07
9	GO:0015288: porin activity	2.02E-05
10	GO:0008308: voltage-gated anion channel activity	2.60E-05
11	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	5.18E-05
12	GO:0003729: mRNA binding	7.05E-05
13	GO:0043021: ribonucleoprotein complex binding	1.27E-04
14	GO:0004634: phosphopyruvate hydratase activity	1.27E-04
15	GO:0003723: RNA binding	1.56E-04
16	GO:0051082: unfolded protein binding	1.68E-04
17	GO:0070180: large ribosomal subunit rRNA binding	2.17E-04
18	GO:0004550: nucleoside diphosphate kinase activity	3.17E-04
19	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3.17E-04
20	GO:0005471: ATP:ADP antiporter activity	5.39E-04
21	GO:0004004: ATP-dependent RNA helicase activity	5.66E-04
22	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.24E-04
23	GO:0031369: translation initiation factor binding	6.60E-04
24	GO:0003746: translation elongation factor activity	7.83E-04
25	GO:0044183: protein binding involved in protein folding	1.84E-03
26	GO:0008026: ATP-dependent helicase activity	1.97E-03
27	GO:0015114: phosphate ion transmembrane transporter activity	2.19E-03
28	GO:0015266: protein channel activity	2.19E-03
29	GO:0008266: poly(U) RNA binding	2.38E-03
30	GO:0004407: histone deacetylase activity	2.96E-03
31	GO:0051087: chaperone binding	3.16E-03
32	GO:0005515: protein binding	3.31E-03
33	GO:0003743: translation initiation factor activity	3.71E-03
34	GO:0008536: Ran GTPase binding	4.72E-03
35	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.72E-03
36	GO:0005096: GTPase activator activity	8.76E-03
37	GO:0003924: GTPase activity	8.97E-03
38	GO:0050897: cobalt ion binding	9.36E-03
39	GO:0003697: single-stranded DNA binding	9.99E-03
40	GO:0050661: NADP binding	1.09E-02
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.33E-02
42	GO:0051287: NAD binding	1.37E-02
43	GO:0003690: double-stranded DNA binding	1.51E-02
44	GO:0005524: ATP binding	1.97E-02
45	GO:0004386: helicase activity	2.01E-02
46	GO:0019843: rRNA binding	2.22E-02
47	GO:0008565: protein transporter activity	2.52E-02
48	GO:0000287: magnesium ion binding	3.76E-02

Rank	GO Term	Adjusted P value
1	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
2	GO:0005730: nucleolus	1.12E-25
3	GO:0005840: ribosome	7.09E-21
4	GO:0022625: cytosolic large ribosomal subunit	1.43E-15
5	GO:0022626: cytosolic ribosome	6.56E-12
6	GO:0005774: vacuolar membrane	2.78E-11
7	GO:0031428: box C/D snoRNP complex	2.36E-08
8	GO:0009506: plasmodesma	7.87E-08
9	GO:0005829: cytosol	2.59E-07
10	GO:0005740: mitochondrial envelope	4.30E-07
11	GO:0032040: small-subunit processome	7.35E-07
12	GO:0022627: cytosolic small ribosomal subunit	1.91E-06
13	GO:0005741: mitochondrial outer membrane	3.05E-06
14	GO:0005773: vacuole	6.77E-06
15	GO:0030687: preribosome, large subunit precursor	1.52E-05
16	GO:0005618: cell wall	1.93E-05
17	GO:0005759: mitochondrial matrix	2.02E-05
18	GO:0016020: membrane	2.35E-05
19	GO:0046930: pore complex	2.60E-05
20	GO:0005737: cytoplasm	3.67E-05
21	GO:0015030: Cajal body	4.00E-05
22	GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m	5.18E-05
23	GO:0005739: mitochondrion	6.97E-05
24	GO:0070545: PeBoW complex	1.27E-04
25	GO:0000015: phosphopyruvate hydratase complex	1.27E-04
26	GO:0005758: mitochondrial intermembrane space	1.30E-04
27	GO:0005743: mitochondrial inner membrane	1.48E-04
28	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	4.24E-04
29	GO:0015934: large ribosomal subunit	7.17E-04
30	GO:0034399: nuclear periphery	1.06E-03
31	GO:0005742: mitochondrial outer membrane translocase complex	1.20E-03
32	GO:0005747: mitochondrial respiratory chain complex I	1.60E-03
33	GO:0005852: eukaryotic translation initiation factor 3 complex	1.84E-03
34	GO:0048046: apoplast	2.16E-03
35	GO:0005753: mitochondrial proton-transporting ATP synthase complex	2.56E-03
36	GO:0070469: respiratory chain	3.16E-03
37	GO:0016592: mediator complex	5.71E-03
38	GO:0005643: nuclear pore	8.46E-03
39	GO:0009507: chloroplast	1.17E-02
40	GO:0005623: cell	2.26E-02
41	GO:0005622: intracellular	2.84E-02
42	GO:0009941: chloroplast envelope	4.53E-02
43	GO:0005886: plasma membrane	4.87E-02