Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G59880

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044794: positive regulation by host of viral process0.00E+00
2GO:0042430: indole-containing compound metabolic process0.00E+00
3GO:0010360: negative regulation of anion channel activity0.00E+00
4GO:1901017: negative regulation of potassium ion transmembrane transporter activity0.00E+00
5GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
6GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
7GO:0006182: cGMP biosynthetic process0.00E+00
8GO:0006457: protein folding2.78E-07
9GO:0042742: defense response to bacterium4.01E-07
10GO:0006099: tricarboxylic acid cycle1.49E-06
11GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.68E-06
12GO:0034976: response to endoplasmic reticulum stress6.25E-06
13GO:0006102: isocitrate metabolic process1.36E-05
14GO:0009617: response to bacterium1.55E-05
15GO:0055114: oxidation-reduction process6.87E-05
16GO:0000304: response to singlet oxygen1.32E-04
17GO:0009697: salicylic acid biosynthetic process1.32E-04
18GO:0009751: response to salicylic acid1.74E-04
19GO:1900056: negative regulation of leaf senescence3.33E-04
20GO:0034975: protein folding in endoplasmic reticulum3.73E-04
21GO:0051938: L-glutamate import3.73E-04
22GO:1990641: response to iron ion starvation3.73E-04
23GO:0010726: positive regulation of hydrogen peroxide metabolic process3.73E-04
24GO:0010421: hydrogen peroxide-mediated programmed cell death3.73E-04
25GO:1990022: RNA polymerase III complex localization to nucleus3.73E-04
26GO:0044376: RNA polymerase II complex import to nucleus3.73E-04
27GO:0006007: glucose catabolic process3.73E-04
28GO:1902361: mitochondrial pyruvate transmembrane transport3.73E-04
29GO:0050691: regulation of defense response to virus by host3.73E-04
30GO:0046244: salicylic acid catabolic process3.73E-04
31GO:0010118: stomatal movement4.05E-04
32GO:0006855: drug transmembrane transport4.87E-04
33GO:0006468: protein phosphorylation5.04E-04
34GO:0010120: camalexin biosynthetic process5.11E-04
35GO:0010193: response to ozone5.87E-04
36GO:0015802: basic amino acid transport8.10E-04
37GO:0006452: translational frameshifting8.10E-04
38GO:0009866: induced systemic resistance, ethylene mediated signaling pathway8.10E-04
39GO:0006101: citrate metabolic process8.10E-04
40GO:0006850: mitochondrial pyruvate transport8.10E-04
41GO:0044419: interspecies interaction between organisms8.10E-04
42GO:0008535: respiratory chain complex IV assembly8.10E-04
43GO:0045905: positive regulation of translational termination8.10E-04
44GO:0097054: L-glutamate biosynthetic process8.10E-04
45GO:0043091: L-arginine import8.10E-04
46GO:0031204: posttranslational protein targeting to membrane, translocation8.10E-04
47GO:0045901: positive regulation of translational elongation8.10E-04
48GO:0009620: response to fungus9.06E-04
49GO:0046686: response to cadmium ion1.06E-03
50GO:0009817: defense response to fungus, incompatible interaction1.30E-03
51GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.31E-03
52GO:0009062: fatty acid catabolic process1.31E-03
53GO:0055074: calcium ion homeostasis1.31E-03
54GO:0002237: response to molecule of bacterial origin1.41E-03
55GO:0010167: response to nitrate1.58E-03
56GO:0002239: response to oomycetes1.89E-03
57GO:0072334: UDP-galactose transmembrane transport1.89E-03
58GO:0006537: glutamate biosynthetic process1.89E-03
59GO:0001676: long-chain fatty acid metabolic process1.89E-03
60GO:0010116: positive regulation of abscisic acid biosynthetic process1.89E-03
61GO:0045454: cell redox homeostasis2.13E-03
62GO:0006952: defense response2.17E-03
63GO:0010150: leaf senescence2.38E-03
64GO:0019676: ammonia assimilation cycle2.54E-03
65GO:0046345: abscisic acid catabolic process2.54E-03
66GO:0034440: lipid oxidation2.54E-03
67GO:0031348: negative regulation of defense response2.59E-03
68GO:0009651: response to salt stress3.01E-03
69GO:0007029: endoplasmic reticulum organization3.25E-03
70GO:0018344: protein geranylgeranylation3.25E-03
71GO:0010225: response to UV-C3.25E-03
72GO:0034052: positive regulation of plant-type hypersensitive response3.25E-03
73GO:0030041: actin filament polymerization3.25E-03
74GO:0046283: anthocyanin-containing compound metabolic process3.25E-03
75GO:0006097: glyoxylate cycle3.25E-03
76GO:0006979: response to oxidative stress3.33E-03
77GO:0006486: protein glycosylation3.56E-03
78GO:0010256: endomembrane system organization4.02E-03
79GO:0043248: proteasome assembly4.02E-03
80GO:0018258: protein O-linked glycosylation via hydroxyproline4.02E-03
81GO:0006561: proline biosynthetic process4.02E-03
82GO:0010942: positive regulation of cell death4.02E-03
83GO:0006121: mitochondrial electron transport, succinate to ubiquinone4.02E-03
84GO:0010405: arabinogalactan protein metabolic process4.02E-03
85GO:0006096: glycolytic process4.40E-03
86GO:0000302: response to reactive oxygen species4.79E-03
87GO:0002229: defense response to oomycetes4.79E-03
88GO:0080086: stamen filament development4.85E-03
89GO:0042372: phylloquinone biosynthetic process4.85E-03
90GO:0009094: L-phenylalanine biosynthetic process4.85E-03
91GO:0007264: small GTPase mediated signal transduction5.12E-03
92GO:0030163: protein catabolic process5.46E-03
93GO:0006744: ubiquinone biosynthetic process5.73E-03
94GO:0042773: ATP synthesis coupled electron transport5.73E-03
95GO:0019745: pentacyclic triterpenoid biosynthetic process5.73E-03
96GO:1902074: response to salt5.73E-03
97GO:0009061: anaerobic respiration6.65E-03
98GO:0030091: protein repair6.65E-03
99GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.65E-03
100GO:2000070: regulation of response to water deprivation6.65E-03
101GO:0009615: response to virus6.94E-03
102GO:0022900: electron transport chain7.64E-03
103GO:0015996: chlorophyll catabolic process7.64E-03
104GO:0009657: plastid organization7.64E-03
105GO:0010204: defense response signaling pathway, resistance gene-independent7.64E-03
106GO:0030968: endoplasmic reticulum unfolded protein response7.64E-03
107GO:0017004: cytochrome complex assembly7.64E-03
108GO:0009627: systemic acquired resistance7.76E-03
109GO:0046685: response to arsenic-containing substance8.66E-03
110GO:0009821: alkaloid biosynthetic process8.66E-03
111GO:0006098: pentose-phosphate shunt8.66E-03
112GO:0010112: regulation of systemic acquired resistance8.66E-03
113GO:0008219: cell death9.07E-03
114GO:0043067: regulation of programmed cell death9.74E-03
115GO:0048354: mucilage biosynthetic process involved in seed coat development9.74E-03
116GO:0006413: translational initiation1.03E-02
117GO:0007064: mitotic sister chromatid cohesion1.09E-02
118GO:0006896: Golgi to vacuole transport1.09E-02
119GO:0009688: abscisic acid biosynthetic process1.09E-02
120GO:0045087: innate immune response1.15E-02
121GO:0009682: induced systemic resistance1.20E-02
122GO:0009807: lignan biosynthetic process1.20E-02
123GO:0000266: mitochondrial fission1.33E-02
124GO:0006790: sulfur compound metabolic process1.33E-02
125GO:0012501: programmed cell death1.33E-02
126GO:0015706: nitrate transport1.33E-02
127GO:0002213: defense response to insect1.33E-02
128GO:0042542: response to hydrogen peroxide1.43E-02
129GO:0006094: gluconeogenesis1.45E-02
130GO:0006807: nitrogen compound metabolic process1.45E-02
131GO:0009718: anthocyanin-containing compound biosynthetic process1.45E-02
132GO:0010075: regulation of meristem growth1.45E-02
133GO:0015031: protein transport1.56E-02
134GO:0009266: response to temperature stimulus1.58E-02
135GO:0009934: regulation of meristem structural organization1.58E-02
136GO:0009737: response to abscisic acid1.65E-02
137GO:0009969: xyloglucan biosynthetic process1.71E-02
138GO:0042343: indole glucosinolate metabolic process1.71E-02
139GO:0009901: anther dehiscence1.71E-02
140GO:0046854: phosphatidylinositol phosphorylation1.71E-02
141GO:0031347: regulation of defense response1.81E-02
142GO:0006071: glycerol metabolic process1.85E-02
143GO:0006406: mRNA export from nucleus1.99E-02
144GO:0005992: trehalose biosynthetic process1.99E-02
145GO:0006874: cellular calcium ion homeostasis2.14E-02
146GO:0006970: response to osmotic stress2.14E-02
147GO:0009695: jasmonic acid biosynthetic process2.14E-02
148GO:0098542: defense response to other organism2.29E-02
149GO:0031408: oxylipin biosynthetic process2.29E-02
150GO:0003333: amino acid transmembrane transport2.29E-02
151GO:0016998: cell wall macromolecule catabolic process2.29E-02
152GO:0030433: ubiquitin-dependent ERAD pathway2.44E-02
153GO:0071456: cellular response to hypoxia2.44E-02
154GO:0019748: secondary metabolic process2.44E-02
155GO:0009626: plant-type hypersensitive response2.54E-02
156GO:0006012: galactose metabolic process2.60E-02
157GO:0040007: growth2.60E-02
158GO:0010227: floral organ abscission2.60E-02
159GO:0009555: pollen development2.75E-02
160GO:0010089: xylem development2.76E-02
161GO:0010584: pollen exine formation2.76E-02
162GO:0019722: calcium-mediated signaling2.76E-02
163GO:0009306: protein secretion2.76E-02
164GO:0009553: embryo sac development2.78E-02
165GO:0009611: response to wounding2.84E-02
166GO:0009624: response to nematode2.87E-02
167GO:0016117: carotenoid biosynthetic process2.92E-02
168GO:0048653: anther development3.08E-02
169GO:0008033: tRNA processing3.08E-02
170GO:0010197: polar nucleus fusion3.25E-02
171GO:0048868: pollen tube development3.25E-02
172GO:0048544: recognition of pollen3.42E-02
173GO:0006623: protein targeting to vacuole3.60E-02
174GO:0009851: auxin biosynthetic process3.60E-02
175GO:0080156: mitochondrial mRNA modification3.78E-02
176GO:0006635: fatty acid beta-oxidation3.78E-02
177GO:0009058: biosynthetic process3.78E-02
178GO:0032259: methylation3.93E-02
179GO:0016032: viral process3.96E-02
180GO:0009408: response to heat4.15E-02
181GO:0009790: embryo development4.18E-02
182GO:0009567: double fertilization forming a zygote and endosperm4.33E-02
183GO:0006464: cellular protein modification process4.33E-02
RankGO TermAdjusted P value
1GO:0051670: inulinase activity0.00E+00
2GO:0015930: glutamate synthase activity0.00E+00
3GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
4GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
5GO:0005092: GDP-dissociation inhibitor activity0.00E+00
6GO:0003756: protein disulfide isomerase activity2.11E-05
7GO:0004674: protein serine/threonine kinase activity2.14E-05
8GO:0005093: Rab GDP-dissociation inhibitor activity2.19E-05
9GO:0009055: electron carrier activity3.88E-05
10GO:0004449: isocitrate dehydrogenase (NAD+) activity4.81E-05
11GO:0005524: ATP binding1.15E-04
12GO:0051082: unfolded protein binding1.73E-04
13GO:0016301: kinase activity1.86E-04
14GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.16E-04
15GO:0005509: calcium ion binding2.58E-04
16GO:0008809: carnitine racemase activity3.73E-04
17GO:0051669: fructan beta-fructosidase activity3.73E-04
18GO:0048037: cofactor binding3.73E-04
19GO:0008909: isochorismate synthase activity3.73E-04
20GO:0031219: levanase activity3.73E-04
21GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity3.73E-04
22GO:0016041: glutamate synthase (ferredoxin) activity3.73E-04
23GO:0031127: alpha-(1,2)-fucosyltransferase activity3.73E-04
24GO:0003994: aconitate hydratase activity8.10E-04
25GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity8.10E-04
26GO:0004775: succinate-CoA ligase (ADP-forming) activity8.10E-04
27GO:0015036: disulfide oxidoreductase activity8.10E-04
28GO:0008517: folic acid transporter activity8.10E-04
29GO:0004776: succinate-CoA ligase (GDP-forming) activity8.10E-04
30GO:0008559: xenobiotic-transporting ATPase activity9.70E-04
31GO:0000030: mannosyltransferase activity1.31E-03
32GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.31E-03
33GO:0050833: pyruvate transmembrane transporter activity1.31E-03
34GO:0004383: guanylate cyclase activity1.31E-03
35GO:0016165: linoleate 13S-lipoxygenase activity1.31E-03
36GO:0030246: carbohydrate binding1.33E-03
37GO:0050660: flavin adenine dinucleotide binding1.37E-03
38GO:0015238: drug transmembrane transporter activity1.39E-03
39GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.76E-03
40GO:0015189: L-lysine transmembrane transporter activity1.89E-03
41GO:0015181: arginine transmembrane transporter activity1.89E-03
42GO:0005460: UDP-glucose transmembrane transporter activity1.89E-03
43GO:0042299: lupeol synthase activity1.89E-03
44GO:0004165: dodecenoyl-CoA delta-isomerase activity1.89E-03
45GO:0051539: 4 iron, 4 sulfur cluster binding2.08E-03
46GO:0004298: threonine-type endopeptidase activity2.37E-03
47GO:0004664: prephenate dehydratase activity2.54E-03
48GO:0005086: ARF guanyl-nucleotide exchange factor activity2.54E-03
49GO:0005313: L-glutamate transmembrane transporter activity2.54E-03
50GO:0004031: aldehyde oxidase activity2.54E-03
51GO:0050302: indole-3-acetaldehyde oxidase activity2.54E-03
52GO:0009916: alternative oxidase activity2.54E-03
53GO:0016866: intramolecular transferase activity2.54E-03
54GO:0047769: arogenate dehydratase activity2.54E-03
55GO:0010294: abscisic acid glucosyltransferase activity3.25E-03
56GO:0005459: UDP-galactose transmembrane transporter activity3.25E-03
57GO:0008177: succinate dehydrogenase (ubiquinone) activity3.25E-03
58GO:0017137: Rab GTPase binding3.25E-03
59GO:0005496: steroid binding3.25E-03
60GO:0000104: succinate dehydrogenase activity3.25E-03
61GO:0051538: 3 iron, 4 sulfur cluster binding3.25E-03
62GO:1990714: hydroxyproline O-galactosyltransferase activity4.02E-03
63GO:0004332: fructose-bisphosphate aldolase activity4.02E-03
64GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity4.02E-03
65GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity4.02E-03
66GO:0016853: isomerase activity4.18E-03
67GO:0010181: FMN binding4.18E-03
68GO:0051920: peroxiredoxin activity4.85E-03
69GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.85E-03
70GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.85E-03
71GO:0102391: decanoate--CoA ligase activity4.85E-03
72GO:0004656: procollagen-proline 4-dioxygenase activity4.85E-03
73GO:0003978: UDP-glucose 4-epimerase activity4.85E-03
74GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.85E-03
75GO:0005507: copper ion binding4.93E-03
76GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity5.73E-03
77GO:0008121: ubiquinol-cytochrome-c reductase activity5.73E-03
78GO:0004467: long-chain fatty acid-CoA ligase activity5.73E-03
79GO:0015035: protein disulfide oxidoreductase activity5.79E-03
80GO:0016491: oxidoreductase activity5.94E-03
81GO:0016209: antioxidant activity6.65E-03
82GO:0043022: ribosome binding6.65E-03
83GO:0051213: dioxygenase activity6.94E-03
84GO:0030247: polysaccharide binding8.18E-03
85GO:0004683: calmodulin-dependent protein kinase activity8.18E-03
86GO:0008757: S-adenosylmethionine-dependent methyltransferase activity8.62E-03
87GO:0008417: fucosyltransferase activity8.66E-03
88GO:0008889: glycerophosphodiester phosphodiesterase activity8.66E-03
89GO:0005096: GTPase activator activity9.54E-03
90GO:0004743: pyruvate kinase activity9.74E-03
91GO:0045309: protein phosphorylated amino acid binding9.74E-03
92GO:0015174: basic amino acid transmembrane transporter activity9.74E-03
93GO:0030955: potassium ion binding9.74E-03
94GO:0016844: strictosidine synthase activity9.74E-03
95GO:0015112: nitrate transmembrane transporter activity9.74E-03
96GO:0015297: antiporter activity1.06E-02
97GO:0008171: O-methyltransferase activity1.09E-02
98GO:0004713: protein tyrosine kinase activity1.09E-02
99GO:0003924: GTPase activity1.17E-02
100GO:0019904: protein domain specific binding1.20E-02
101GO:0004129: cytochrome-c oxidase activity1.20E-02
102GO:0008794: arsenate reductase (glutaredoxin) activity1.20E-02
103GO:0008194: UDP-glycosyltransferase activity1.29E-02
104GO:0008378: galactosyltransferase activity1.33E-02
105GO:0003743: translation initiation factor activity1.37E-02
106GO:0015114: phosphate ion transmembrane transporter activity1.45E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity1.45E-02
108GO:0051537: 2 iron, 2 sulfur cluster binding1.61E-02
109GO:0003712: transcription cofactor activity1.71E-02
110GO:0004970: ionotropic glutamate receptor activity1.71E-02
111GO:0005217: intracellular ligand-gated ion channel activity1.71E-02
112GO:0046872: metal ion binding1.88E-02
113GO:0031418: L-ascorbic acid binding1.99E-02
114GO:0003954: NADH dehydrogenase activity1.99E-02
115GO:0051536: iron-sulfur cluster binding1.99E-02
116GO:0043424: protein histidine kinase binding2.14E-02
117GO:0008233: peptidase activity2.51E-02
118GO:0080043: quercetin 3-O-glucosyltransferase activity2.62E-02
119GO:0080044: quercetin 7-O-glucosyltransferase activity2.62E-02
120GO:0005506: iron ion binding2.74E-02
121GO:0005215: transporter activity3.33E-02
122GO:0016758: transferase activity, transferring hexosyl groups3.49E-02
123GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.53E-02
124GO:0008137: NADH dehydrogenase (ubiquinone) activity3.78E-02
125GO:0004197: cysteine-type endopeptidase activity3.96E-02
126GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.14E-02
127GO:0008237: metallopeptidase activity4.52E-02
128GO:0016597: amino acid binding4.71E-02
129GO:0005516: calmodulin binding4.96E-02
RankGO TermAdjusted P value
1GO:0005784: Sec61 translocon complex0.00E+00
2GO:0031205: endoplasmic reticulum Sec complex0.00E+00
3GO:0046862: chromoplast membrane0.00E+00
4GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
5GO:0005788: endoplasmic reticulum lumen6.04E-12
6GO:0005783: endoplasmic reticulum2.68E-08
7GO:0005886: plasma membrane2.89E-08
8GO:0005774: vacuolar membrane1.27E-05
9GO:0000502: proteasome complex8.20E-05
10GO:0005773: vacuole1.07E-04
11GO:0005746: mitochondrial respiratory chain1.32E-04
12GO:0016021: integral component of membrane2.57E-04
13GO:0005911: cell-cell junction3.73E-04
14GO:0045273: respiratory chain complex II4.18E-04
15GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.18E-04
16GO:0019773: proteasome core complex, alpha-subunit complex5.11E-04
17GO:0031314: extrinsic component of mitochondrial inner membrane8.10E-04
18GO:0008541: proteasome regulatory particle, lid subcomplex9.70E-04
19GO:0005750: mitochondrial respiratory chain complex III1.41E-03
20GO:0009536: plastid1.72E-03
21GO:0005968: Rab-protein geranylgeranyltransferase complex1.89E-03
22GO:0005839: proteasome core complex2.37E-03
23GO:0005829: cytosol2.40E-03
24GO:0009898: cytoplasmic side of plasma membrane2.54E-03
25GO:0030173: integral component of Golgi membrane4.85E-03
26GO:0005794: Golgi apparatus4.98E-03
27GO:0016592: mediator complex5.12E-03
28GO:0031305: integral component of mitochondrial inner membrane6.65E-03
29GO:0000326: protein storage vacuole7.64E-03
30GO:0030665: clathrin-coated vesicle membrane9.74E-03
31GO:0005743: mitochondrial inner membrane1.04E-02
32GO:0000325: plant-type vacuole1.05E-02
33GO:0005777: peroxisome1.07E-02
34GO:0017119: Golgi transport complex1.09E-02
35GO:0090404: pollen tube tip1.20E-02
36GO:0016020: membrane1.50E-02
37GO:0030176: integral component of endoplasmic reticulum membrane1.71E-02
38GO:0031966: mitochondrial membrane1.87E-02
39GO:0070469: respiratory chain2.14E-02
40GO:0045271: respiratory chain complex I2.14E-02
41GO:0048046: apoplast2.17E-02
42GO:0005789: endoplasmic reticulum membrane2.21E-02
43GO:0005618: cell wall2.63E-02
44GO:0030136: clathrin-coated vesicle2.92E-02
45GO:0032580: Golgi cisterna membrane4.33E-02
46GO:0005739: mitochondrion4.75E-02
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Gene type



Gene DE type