co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:1901698: response to nitrogen compound	0.00E+00
3	GO:0061635: regulation of protein complex stability	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0015706: nitrate transport	1.54E-04
6	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	2.16E-04
7	GO:0006521: regulation of cellular amino acid metabolic process	2.16E-04
8	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.16E-04
9	GO:0010167: response to nitrate	2.28E-04
10	GO:0006696: ergosterol biosynthetic process	3.61E-04
11	GO:0006000: fructose metabolic process	3.61E-04
12	GO:0071705: nitrogen compound transport	3.61E-04
13	GO:0015979: photosynthesis	3.79E-04
14	GO:0006412: translation	4.22E-04
15	GO:2001141: regulation of RNA biosynthetic process	5.20E-04
16	GO:1902476: chloride transmembrane transport	5.20E-04
17	GO:0009800: cinnamic acid biosynthetic process	5.20E-04
18	GO:0071249: cellular response to nitrate	6.90E-04
19	GO:0015994: chlorophyll metabolic process	6.90E-04
20	GO:0006564: L-serine biosynthetic process	8.73E-04
21	GO:0009247: glycolipid biosynthetic process	8.73E-04
22	GO:0007623: circadian rhythm	9.06E-04
23	GO:0010027: thylakoid membrane organization	9.86E-04
24	GO:0042549: photosystem II stabilization	1.07E-03
25	GO:0006559: L-phenylalanine catabolic process	1.07E-03
26	GO:0032973: amino acid export	1.07E-03
27	GO:0009735: response to cytokinin	1.17E-03
28	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.27E-03
29	GO:0018298: protein-chromophore linkage	1.27E-03
30	GO:0009854: oxidative photosynthetic carbon pathway	1.27E-03
31	GO:0010019: chloroplast-nucleus signaling pathway	1.27E-03
32	GO:0009645: response to low light intensity stimulus	1.49E-03
33	GO:0010444: guard mother cell differentiation	1.49E-03
34	GO:0043090: amino acid import	1.49E-03
35	GO:0050829: defense response to Gram-negative bacterium	1.49E-03
36	GO:0006821: chloride transport	1.49E-03
37	GO:0006605: protein targeting	1.72E-03
38	GO:0019375: galactolipid biosynthetic process	1.72E-03
39	GO:0007155: cell adhesion	1.72E-03
40	GO:0006402: mRNA catabolic process	1.72E-03
41	GO:0009699: phenylpropanoid biosynthetic process	1.96E-03
42	GO:0006002: fructose 6-phosphate metabolic process	1.96E-03
43	GO:0071482: cellular response to light stimulus	1.96E-03
44	GO:0080144: amino acid homeostasis	2.21E-03
45	GO:0009644: response to high light intensity	2.21E-03
46	GO:0010205: photoinhibition	2.48E-03
47	GO:0043085: positive regulation of catalytic activity	3.03E-03
48	GO:0006352: DNA-templated transcription, initiation	3.03E-03
49	GO:0009750: response to fructose	3.03E-03
50	GO:0009698: phenylpropanoid metabolic process	3.03E-03
51	GO:0005983: starch catabolic process	3.32E-03
52	GO:2000028: regulation of photoperiodism, flowering	3.63E-03
53	GO:0050826: response to freezing	3.63E-03
54	GO:0006094: gluconeogenesis	3.63E-03
55	GO:0009767: photosynthetic electron transport chain	3.63E-03
56	GO:0005986: sucrose biosynthetic process	3.63E-03
57	GO:0042545: cell wall modification	3.78E-03
58	GO:0010207: photosystem II assembly	3.93E-03
59	GO:0006636: unsaturated fatty acid biosynthetic process	4.58E-03
60	GO:0005992: trehalose biosynthetic process	4.92E-03
61	GO:0009768: photosynthesis, light harvesting in photosystem I	5.27E-03
62	GO:0006418: tRNA aminoacylation for protein translation	5.27E-03
63	GO:0019915: lipid storage	5.62E-03
64	GO:0031408: oxylipin biosynthetic process	5.62E-03
65	GO:0045490: pectin catabolic process	6.70E-03
66	GO:0009306: protein secretion	6.73E-03
67	GO:0006284: base-excision repair	6.73E-03
68	GO:0016117: carotenoid biosynthetic process	7.11E-03
69	GO:0000413: protein peptidyl-prolyl isomerization	7.51E-03
70	GO:0010087: phloem or xylem histogenesis	7.51E-03
71	GO:0006457: protein folding	9.57E-03
72	GO:0010583: response to cyclopentenone	9.60E-03
73	GO:0009658: chloroplast organization	1.04E-02
74	GO:0042254: ribosome biogenesis	1.06E-02
75	GO:0042128: nitrate assimilation	1.28E-02
76	GO:0010411: xyloglucan metabolic process	1.33E-02
77	GO:0015995: chlorophyll biosynthetic process	1.33E-02
78	GO:0016311: dephosphorylation	1.38E-02
79	GO:0048481: plant ovule development	1.43E-02
80	GO:0000160: phosphorelay signal transduction system	1.48E-02
81	GO:0009637: response to blue light	1.69E-02
82	GO:0009853: photorespiration	1.69E-02
83	GO:0010114: response to red light	2.03E-02
84	GO:0042546: cell wall biogenesis	2.09E-02
85	GO:0008152: metabolic process	2.10E-02
86	GO:0009736: cytokinin-activated signaling pathway	2.51E-02
87	GO:0006857: oligopeptide transport	2.63E-02
88	GO:0006810: transport	2.74E-02
89	GO:0009626: plant-type hypersensitive response	2.96E-02
90	GO:0009790: embryo development	4.22E-02
91	GO:0009793: embryo development ending in seed dormancy	4.79E-02
92	GO:0009451: RNA modification	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0008887: glycerate kinase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
4	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0046905: phytoene synthase activity	0.00E+00
8	GO:0019843: rRNA binding	9.53E-08
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.34E-05
10	GO:0016597: amino acid binding	5.83E-05
11	GO:0046906: tetrapyrrole binding	9.14E-05
12	GO:0009671: nitrate:proton symporter activity	9.14E-05
13	GO:0051996: squalene synthase activity	9.14E-05
14	GO:0003735: structural constituent of ribosome	1.59E-04
15	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.16E-04
16	GO:0047746: chlorophyllase activity	2.16E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	2.16E-04
18	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.16E-04
19	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.16E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	2.16E-04
21	GO:0008967: phosphoglycolate phosphatase activity	2.16E-04
22	GO:0005528: FK506 binding	2.85E-04
23	GO:0045548: phenylalanine ammonia-lyase activity	3.61E-04
24	GO:0002161: aminoacyl-tRNA editing activity	3.61E-04
25	GO:0035250: UDP-galactosyltransferase activity	5.20E-04
26	GO:0005253: anion channel activity	6.90E-04
27	GO:0001053: plastid sigma factor activity	6.90E-04
28	GO:0016987: sigma factor activity	6.90E-04
29	GO:0008725: DNA-3-methyladenine glycosylase activity	8.73E-04
30	GO:0016168: chlorophyll binding	1.04E-03
31	GO:0005247: voltage-gated chloride channel activity	1.07E-03
32	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.27E-03
33	GO:0019899: enzyme binding	1.49E-03
34	GO:0004033: aldo-keto reductase (NADP) activity	1.72E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	1.96E-03
36	GO:0015112: nitrate transmembrane transporter activity	2.48E-03
37	GO:0004805: trehalose-phosphatase activity	2.75E-03
38	GO:0008794: arsenate reductase (glutaredoxin) activity	3.03E-03
39	GO:0045330: aspartyl esterase activity	3.04E-03
40	GO:0000049: tRNA binding	3.32E-03
41	GO:0030599: pectinesterase activity	3.67E-03
42	GO:0031409: pigment binding	4.58E-03
43	GO:0022891: substrate-specific transmembrane transporter activity	6.35E-03
44	GO:0004812: aminoacyl-tRNA ligase activity	7.11E-03
45	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.16E-03
46	GO:0048038: quinone binding	9.16E-03
47	GO:0000156: phosphorelay response regulator activity	1.00E-02
48	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.33E-02
49	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	1.38E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.43E-02
51	GO:0004222: metalloendopeptidase activity	1.54E-02
52	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.75E-02
53	GO:0004185: serine-type carboxypeptidase activity	2.03E-02
54	GO:0051537: 2 iron, 2 sulfur cluster binding	2.14E-02
55	GO:0015293: symporter activity	2.20E-02
56	GO:0051287: NAD binding	2.32E-02
57	GO:0016491: oxidoreductase activity	2.39E-02
58	GO:0046983: protein dimerization activity	2.43E-02
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.51E-02
60	GO:0016298: lipase activity	2.57E-02
61	GO:0015171: amino acid transmembrane transporter activity	2.70E-02
62	GO:0015035: protein disulfide oxidoreductase activity	3.29E-02
63	GO:0004252: serine-type endopeptidase activity	4.07E-02
64	GO:0015144: carbohydrate transmembrane transporter activity	4.30E-02
65	GO:0016787: hydrolase activity	4.36E-02
66	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.52E-02
67	GO:0046910: pectinesterase inhibitor activity	4.52E-02
68	GO:0005351: sugar:proton symporter activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	2.75E-18
3	GO:0009535: chloroplast thylakoid membrane	1.76E-11
4	GO:0009543: chloroplast thylakoid lumen	5.97E-11
5	GO:0009570: chloroplast stroma	1.66E-09
6	GO:0009534: chloroplast thylakoid	1.93E-08
7	GO:0009941: chloroplast envelope	2.17E-08
8	GO:0031969: chloroplast membrane	3.12E-05
9	GO:0009344: nitrite reductase complex [NAD(P)H]	9.14E-05
10	GO:0009782: photosystem I antenna complex	9.14E-05
11	GO:0031977: thylakoid lumen	1.72E-04
12	GO:0005840: ribosome	1.89E-04
13	GO:0000312: plastid small ribosomal subunit	2.02E-04
14	GO:0009654: photosystem II oxygen evolving complex	3.15E-04
15	GO:0009579: thylakoid	3.37E-04
16	GO:0009706: chloroplast inner membrane	4.57E-04
17	GO:0042646: plastid nucleoid	5.20E-04
18	GO:0019898: extrinsic component of membrane	6.49E-04
19	GO:0034707: chloride channel complex	1.07E-03
20	GO:0016363: nuclear matrix	1.27E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-03
22	GO:0030095: chloroplast photosystem II	3.93E-03
23	GO:0030076: light-harvesting complex	4.26E-03
24	GO:0010287: plastoglobule	4.61E-03
25	GO:0015935: small ribosomal subunit	5.62E-03
26	GO:0009523: photosystem II	8.74E-03
27	GO:0022627: cytosolic small ribosomal subunit	8.87E-03
28	GO:0071944: cell periphery	1.00E-02
29	GO:0009295: nucleoid	1.09E-02
30	GO:0030529: intracellular ribonucleoprotein complex	1.19E-02
31	GO:0015934: large ribosomal subunit	1.59E-02
32	GO:0016020: membrane	2.04E-02
33	GO:0016021: integral component of membrane	3.69E-02
34	GO:0005773: vacuole	4.69E-02
35	GO:0009705: plant-type vacuole membrane	4.75E-02