co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G58900

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900000: regulation of anthocyanin catabolic process	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:0006399: tRNA metabolic process	0.00E+00
10	GO:0010207: photosystem II assembly	6.59E-05
11	GO:0045038: protein import into chloroplast thylakoid membrane	9.24E-05
12	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.34E-04
13	GO:0009735: response to cytokinin	2.66E-04
14	GO:0034337: RNA folding	2.99E-04
15	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.99E-04
16	GO:0000476: maturation of 4.5S rRNA	2.99E-04
17	GO:0000967: rRNA 5'-end processing	2.99E-04
18	GO:0070509: calcium ion import	2.99E-04
19	GO:0007263: nitric oxide mediated signal transduction	2.99E-04
20	GO:0043953: protein transport by the Tat complex	2.99E-04
21	GO:0010480: microsporocyte differentiation	2.99E-04
22	GO:0000481: maturation of 5S rRNA	2.99E-04
23	GO:0042547: cell wall modification involved in multidimensional cell growth	2.99E-04
24	GO:0065002: intracellular protein transmembrane transport	2.99E-04
25	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.99E-04
26	GO:0032544: plastid translation	3.71E-04
27	GO:0010206: photosystem II repair	4.46E-04
28	GO:0000373: Group II intron splicing	4.46E-04
29	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.55E-04
30	GO:0034470: ncRNA processing	6.55E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.55E-04
32	GO:0006695: cholesterol biosynthetic process	6.55E-04
33	GO:0034755: iron ion transmembrane transport	6.55E-04
34	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	6.55E-04
35	GO:0015995: chlorophyll biosynthetic process	7.66E-04
36	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.25E-04
37	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.06E-03
38	GO:0006000: fructose metabolic process	1.06E-03
39	GO:0006954: inflammatory response	1.06E-03
40	GO:0006013: mannose metabolic process	1.06E-03
41	GO:0006518: peptide metabolic process	1.06E-03
42	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.06E-03
43	GO:0071705: nitrogen compound transport	1.06E-03
44	GO:0043617: cellular response to sucrose starvation	1.06E-03
45	GO:0051176: positive regulation of sulfur metabolic process	1.06E-03
46	GO:0015979: photosynthesis	1.10E-03
47	GO:0007623: circadian rhythm	1.45E-03
48	GO:0034059: response to anoxia	1.52E-03
49	GO:0009226: nucleotide-sugar biosynthetic process	1.52E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.52E-03
51	GO:0016556: mRNA modification	1.52E-03
52	GO:2001141: regulation of RNA biosynthetic process	1.52E-03
53	GO:0010109: regulation of photosynthesis	2.04E-03
54	GO:0071249: cellular response to nitrate	2.04E-03
55	GO:0045727: positive regulation of translation	2.04E-03
56	GO:0009435: NAD biosynthetic process	2.61E-03
57	GO:0042631: cellular response to water deprivation	2.61E-03
58	GO:0009247: glycolipid biosynthetic process	2.61E-03
59	GO:0032543: mitochondrial translation	2.61E-03
60	GO:0006564: L-serine biosynthetic process	2.61E-03
61	GO:0010087: phloem or xylem histogenesis	2.61E-03
62	GO:0009958: positive gravitropism	2.81E-03
63	GO:0009646: response to absence of light	3.02E-03
64	GO:0042549: photosystem II stabilization	3.22E-03
65	GO:0016554: cytidine to uridine editing	3.22E-03
66	GO:0010190: cytochrome b6f complex assembly	3.22E-03
67	GO:0032973: amino acid export	3.22E-03
68	GO:0000741: karyogamy	3.22E-03
69	GO:0006354: DNA-templated transcription, elongation	3.22E-03
70	GO:0006751: glutathione catabolic process	3.22E-03
71	GO:0042372: phylloquinone biosynthetic process	3.87E-03
72	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.87E-03
73	GO:0006694: steroid biosynthetic process	3.87E-03
74	GO:0048280: vesicle fusion with Golgi apparatus	3.87E-03
75	GO:0009610: response to symbiotic fungus	4.57E-03
76	GO:0043090: amino acid import	4.57E-03
77	GO:0048437: floral organ development	4.57E-03
78	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	4.57E-03
79	GO:0010444: guard mother cell differentiation	4.57E-03
80	GO:0051510: regulation of unidimensional cell growth	4.57E-03
81	GO:0010027: thylakoid membrane organization	5.00E-03
82	GO:0006468: protein phosphorylation	5.07E-03
83	GO:0006402: mRNA catabolic process	5.30E-03
84	GO:0009690: cytokinin metabolic process	5.30E-03
85	GO:0006605: protein targeting	5.30E-03
86	GO:0019375: galactolipid biosynthetic process	5.30E-03
87	GO:0010078: maintenance of root meristem identity	5.30E-03
88	GO:0032508: DNA duplex unwinding	5.30E-03
89	GO:0042128: nitrate assimilation	5.59E-03
90	GO:0006002: fructose 6-phosphate metabolic process	6.08E-03
91	GO:0071482: cellular response to light stimulus	6.08E-03
92	GO:0043562: cellular response to nitrogen levels	6.08E-03
93	GO:0009808: lignin metabolic process	6.08E-03
94	GO:0016311: dephosphorylation	6.20E-03
95	GO:0046685: response to arsenic-containing substance	6.89E-03
96	GO:0009821: alkaloid biosynthetic process	6.89E-03
97	GO:0045337: farnesyl diphosphate biosynthetic process	6.89E-03
98	GO:0080144: amino acid homeostasis	6.89E-03
99	GO:0033384: geranyl diphosphate biosynthetic process	6.89E-03
100	GO:0009060: aerobic respiration	6.89E-03
101	GO:0009451: RNA modification	7.60E-03
102	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	7.74E-03
103	GO:0010205: photoinhibition	7.74E-03
104	GO:0009638: phototropism	7.74E-03
105	GO:0006779: porphyrin-containing compound biosynthetic process	7.74E-03
106	GO:1900865: chloroplast RNA modification	7.74E-03
107	GO:0006896: Golgi to vacuole transport	8.62E-03
108	GO:0006782: protoporphyrinogen IX biosynthetic process	8.62E-03
109	GO:0007166: cell surface receptor signaling pathway	8.75E-03
110	GO:0009684: indoleacetic acid biosynthetic process	9.55E-03
111	GO:0009073: aromatic amino acid family biosynthetic process	9.55E-03
112	GO:0006879: cellular iron ion homeostasis	9.55E-03
113	GO:0006352: DNA-templated transcription, initiation	9.55E-03
114	GO:0009750: response to fructose	9.55E-03
115	GO:0048229: gametophyte development	9.55E-03
116	GO:0005983: starch catabolic process	1.05E-02
117	GO:0015706: nitrate transport	1.05E-02
118	GO:0010114: response to red light	1.07E-02
119	GO:0006094: gluconeogenesis	1.15E-02
120	GO:0009767: photosynthetic electron transport chain	1.15E-02
121	GO:0005986: sucrose biosynthetic process	1.15E-02
122	GO:0010588: cotyledon vascular tissue pattern formation	1.15E-02
123	GO:0030048: actin filament-based movement	1.15E-02
124	GO:2000028: regulation of photoperiodism, flowering	1.15E-02
125	GO:0050826: response to freezing	1.15E-02
126	GO:0009718: anthocyanin-containing compound biosynthetic process	1.15E-02
127	GO:0010075: regulation of meristem growth	1.15E-02
128	GO:0009644: response to high light intensity	1.16E-02
129	GO:0009934: regulation of meristem structural organization	1.25E-02
130	GO:0048768: root hair cell tip growth	1.25E-02
131	GO:0048467: gynoecium development	1.25E-02
132	GO:0009658: chloroplast organization	1.29E-02
133	GO:0010167: response to nitrate	1.36E-02
134	GO:0090351: seedling development	1.36E-02
135	GO:0010030: positive regulation of seed germination	1.36E-02
136	GO:0006364: rRNA processing	1.45E-02
137	GO:0006636: unsaturated fatty acid biosynthetic process	1.47E-02
138	GO:0009723: response to ethylene	1.55E-02
139	GO:0009416: response to light stimulus	1.68E-02
140	GO:0006418: tRNA aminoacylation for protein translation	1.69E-02
141	GO:0019915: lipid storage	1.81E-02
142	GO:0061077: chaperone-mediated protein folding	1.81E-02
143	GO:0009626: plant-type hypersensitive response	1.82E-02
144	GO:0010017: red or far-red light signaling pathway	1.93E-02
145	GO:0009814: defense response, incompatible interaction	1.93E-02
146	GO:0016226: iron-sulfur cluster assembly	1.93E-02
147	GO:0006730: one-carbon metabolic process	1.93E-02
148	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.31E-02
149	GO:0006412: translation	2.31E-02
150	GO:0042147: retrograde transport, endosome to Golgi	2.31E-02
151	GO:0048653: anther development	2.44E-02
152	GO:0042391: regulation of membrane potential	2.44E-02
153	GO:0080022: primary root development	2.44E-02
154	GO:0009741: response to brassinosteroid	2.57E-02
155	GO:0010197: polar nucleus fusion	2.57E-02
156	GO:0009793: embryo development ending in seed dormancy	2.59E-02
157	GO:0006814: sodium ion transport	2.71E-02
158	GO:0006623: protein targeting to vacuole	2.85E-02
159	GO:0009791: post-embryonic development	2.85E-02
160	GO:0048825: cotyledon development	2.85E-02
161	GO:0009851: auxin biosynthetic process	2.85E-02
162	GO:0042744: hydrogen peroxide catabolic process	2.94E-02
163	GO:0002229: defense response to oomycetes	2.99E-02
164	GO:0000302: response to reactive oxygen species	2.99E-02
165	GO:0006891: intra-Golgi vesicle-mediated transport	2.99E-02
166	GO:0016132: brassinosteroid biosynthetic process	2.99E-02
167	GO:0016032: viral process	3.13E-02
168	GO:0030163: protein catabolic process	3.28E-02
169	GO:0010090: trichome morphogenesis	3.28E-02
170	GO:0009567: double fertilization forming a zygote and endosperm	3.42E-02
171	GO:0071805: potassium ion transmembrane transport	3.58E-02
172	GO:0010411: xyloglucan metabolic process	4.36E-02
173	GO:0006888: ER to Golgi vesicle-mediated transport	4.36E-02
174	GO:0048481: plant ovule development	4.69E-02
175	GO:0018298: protein-chromophore linkage	4.69E-02
176	GO:0000160: phosphorelay signal transduction system	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005048: signal sequence binding	0.00E+00
2	GO:0050614: delta24-sterol reductase activity	0.00E+00
3	GO:0005222: intracellular cAMP activated cation channel activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0008987: quinolinate synthetase A activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
10	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
11	GO:0019843: rRNA binding	5.43E-08
12	GO:0005528: FK506 binding	3.93E-06
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.84E-05
14	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.99E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.99E-04
16	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.99E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	2.99E-04
18	GO:0005221: intracellular cyclic nucleotide activated cation channel activity	2.99E-04
19	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.55E-04
20	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.55E-04
21	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.55E-04
22	GO:0004617: phosphoglycerate dehydrogenase activity	6.55E-04
23	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.55E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.55E-04
25	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.55E-04
26	GO:0015929: hexosaminidase activity	6.55E-04
27	GO:0004563: beta-N-acetylhexosaminidase activity	6.55E-04
28	GO:0003839: gamma-glutamylcyclotransferase activity	6.55E-04
29	GO:0004022: alcohol dehydrogenase (NAD) activity	9.19E-04
30	GO:0003723: RNA binding	9.25E-04
31	GO:0008266: poly(U) RNA binding	1.03E-03
32	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	1.06E-03
33	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.06E-03
34	GO:0002161: aminoacyl-tRNA editing activity	1.06E-03
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.06E-03
36	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.30E-03
37	GO:0008508: bile acid:sodium symporter activity	1.52E-03
38	GO:0001872: (1->3)-beta-D-glucan binding	1.52E-03
39	GO:0035250: UDP-galactosyltransferase activity	1.52E-03
40	GO:0016851: magnesium chelatase activity	1.52E-03
41	GO:0004519: endonuclease activity	2.00E-03
42	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	2.04E-03
43	GO:0016987: sigma factor activity	2.04E-03
44	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.04E-03
45	GO:0001053: plastid sigma factor activity	2.04E-03
46	GO:0008374: O-acyltransferase activity	2.61E-03
47	GO:0016846: carbon-sulfur lyase activity	2.61E-03
48	GO:0004130: cytochrome-c peroxidase activity	3.22E-03
49	GO:0016208: AMP binding	3.22E-03
50	GO:0042578: phosphoric ester hydrolase activity	3.22E-03
51	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.87E-03
52	GO:0005261: cation channel activity	3.87E-03
53	GO:0004559: alpha-mannosidase activity	3.87E-03
54	GO:0005242: inward rectifier potassium channel activity	3.87E-03
55	GO:0016597: amino acid binding	4.72E-03
56	GO:0008312: 7S RNA binding	5.30E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	5.30E-03
58	GO:0004252: serine-type endopeptidase activity	5.59E-03
59	GO:0008236: serine-type peptidase activity	6.20E-03
60	GO:0004337: geranyltranstransferase activity	6.89E-03
61	GO:0003735: structural constituent of ribosome	7.08E-03
62	GO:0005381: iron ion transmembrane transporter activity	7.74E-03
63	GO:0016844: strictosidine synthase activity	7.74E-03
64	GO:0008047: enzyme activator activity	8.62E-03
65	GO:0004161: dimethylallyltranstransferase activity	9.55E-03
66	GO:0000049: tRNA binding	1.05E-02
67	GO:0005262: calcium channel activity	1.15E-02
68	GO:0004565: beta-galactosidase activity	1.15E-02
69	GO:0003774: motor activity	1.25E-02
70	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.25E-02
71	GO:0030552: cAMP binding	1.36E-02
72	GO:0030553: cGMP binding	1.36E-02
73	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.45E-02
74	GO:0005216: ion channel activity	1.69E-02
75	GO:0015079: potassium ion transmembrane transporter activity	1.69E-02
76	GO:0033612: receptor serine/threonine kinase binding	1.81E-02
77	GO:0022891: substrate-specific transmembrane transporter activity	2.05E-02
78	GO:0030570: pectate lyase activity	2.05E-02
79	GO:0004812: aminoacyl-tRNA ligase activity	2.31E-02
80	GO:0030551: cyclic nucleotide binding	2.44E-02
81	GO:0050662: coenzyme binding	2.71E-02
82	GO:0010181: FMN binding	2.71E-02
83	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.99E-02
84	GO:0004672: protein kinase activity	3.08E-02
85	GO:0004518: nuclease activity	3.13E-02
86	GO:0000156: phosphorelay response regulator activity	3.28E-02
87	GO:0008194: UDP-glycosyltransferase activity	3.98E-02
88	GO:0016168: chlorophyll binding	4.04E-02
89	GO:0003743: translation initiation factor activity	4.15E-02
90	GO:0030247: polysaccharide binding	4.36E-02
91	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.36E-02
92	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	4.52E-02
93	GO:0004674: protein serine/threonine kinase activity	4.62E-02
94	GO:0015238: drug transmembrane transporter activity	4.85E-02
95	GO:0005096: GTPase activator activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	1.17E-26
5	GO:0009570: chloroplast stroma	5.82E-17
6	GO:0009535: chloroplast thylakoid membrane	3.03E-11
7	GO:0009543: chloroplast thylakoid lumen	1.04E-10
8	GO:0009941: chloroplast envelope	2.67E-10
9	GO:0009534: chloroplast thylakoid	2.88E-09
10	GO:0009579: thylakoid	3.05E-07
11	GO:0080085: signal recognition particle, chloroplast targeting	4.08E-06
12	GO:0031977: thylakoid lumen	1.61E-05
13	GO:0031361: integral component of thylakoid membrane	2.99E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.99E-04
15	GO:0000428: DNA-directed RNA polymerase complex	2.99E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	2.99E-04
17	GO:0009547: plastid ribosome	2.99E-04
18	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.71E-04
19	GO:0030529: intracellular ribonucleoprotein complex	6.23E-04
20	GO:0000312: plastid small ribosomal subunit	1.03E-03
21	GO:0010007: magnesium chelatase complex	1.06E-03
22	GO:0033281: TAT protein transport complex	1.06E-03
23	GO:0009654: photosystem II oxygen evolving complex	1.56E-03
24	GO:0043231: intracellular membrane-bounded organelle	2.05E-03
25	GO:0046658: anchored component of plasma membrane	2.22E-03
26	GO:0009523: photosystem II	3.24E-03
27	GO:0019898: extrinsic component of membrane	3.24E-03
28	GO:0009295: nucleoid	4.45E-03
29	GO:0009533: chloroplast stromal thylakoid	4.57E-03
30	GO:0012507: ER to Golgi transport vesicle membrane	5.30E-03
31	GO:0016020: membrane	6.66E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.89E-03
33	GO:0016459: myosin complex	8.62E-03
34	GO:0032040: small-subunit processome	1.05E-02
35	GO:0000311: plastid large ribosomal subunit	1.05E-02
36	GO:0009508: plastid chromosome	1.15E-02
37	GO:0005886: plasma membrane	1.23E-02
38	GO:0030095: chloroplast photosystem II	1.25E-02
39	GO:0005840: ribosome	1.75E-02
40	GO:0009532: plastid stroma	1.81E-02
41	GO:0009706: chloroplast inner membrane	2.06E-02
42	GO:0009505: plant-type cell wall	2.36E-02
43	GO:0010287: plastoglobule	2.45E-02
44	GO:0009522: photosystem I	2.71E-02
45	GO:0016021: integral component of membrane	3.21E-02
46	GO:0005759: mitochondrial matrix	3.24E-02
47	GO:0031225: anchored component of membrane	3.25E-02
48	GO:0005778: peroxisomal membrane	3.58E-02
49	GO:0022627: cytosolic small ribosomal subunit	4.70E-02