co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0090627: plant epidermal cell differentiation	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0048507: meristem development	2.37E-06
9	GO:0010205: photoinhibition	3.25E-06
10	GO:0009773: photosynthetic electron transport in photosystem I	5.66E-06
11	GO:0042549: photosystem II stabilization	3.80E-05
12	GO:0009913: epidermal cell differentiation	3.80E-05
13	GO:0071482: cellular response to light stimulus	1.17E-04
14	GO:0043087: regulation of GTPase activity	1.37E-04
15	GO:0043609: regulation of carbon utilization	1.37E-04
16	GO:0010028: xanthophyll cycle	1.37E-04
17	GO:0034337: RNA folding	1.37E-04
18	GO:0051013: microtubule severing	1.37E-04
19	GO:0010450: inflorescence meristem growth	1.37E-04
20	GO:0000305: response to oxygen radical	1.37E-04
21	GO:0015969: guanosine tetraphosphate metabolic process	1.37E-04
22	GO:0019646: aerobic electron transport chain	1.37E-04
23	GO:0051775: response to redox state	1.37E-04
24	GO:0010480: microsporocyte differentiation	1.37E-04
25	GO:0000481: maturation of 5S rRNA	1.37E-04
26	GO:0000373: Group II intron splicing	1.44E-04
27	GO:0006094: gluconeogenesis	3.14E-04
28	GO:0016122: xanthophyll metabolic process	3.16E-04
29	GO:0035304: regulation of protein dephosphorylation	3.16E-04
30	GO:0010207: photosystem II assembly	3.55E-04
31	GO:0006636: unsaturated fatty acid biosynthetic process	4.45E-04
32	GO:0016050: vesicle organization	5.20E-04
33	GO:0045165: cell fate commitment	5.20E-04
34	GO:0006000: fructose metabolic process	5.20E-04
35	GO:0006518: peptide metabolic process	5.20E-04
36	GO:0071230: cellular response to amino acid stimulus	5.20E-04
37	GO:0006364: rRNA processing	5.89E-04
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.44E-04
39	GO:0051639: actin filament network formation	7.44E-04
40	GO:0006107: oxaloacetate metabolic process	7.44E-04
41	GO:0010305: leaf vascular tissue pattern formation	9.59E-04
42	GO:0010109: regulation of photosynthesis	9.85E-04
43	GO:0051764: actin crosslink formation	9.85E-04
44	GO:0045727: positive regulation of translation	9.85E-04
45	GO:0015994: chlorophyll metabolic process	9.85E-04
46	GO:0006749: glutathione metabolic process	9.85E-04
47	GO:0006734: NADH metabolic process	9.85E-04
48	GO:0048825: cotyledon development	1.10E-03
49	GO:0048497: maintenance of floral organ identity	1.25E-03
50	GO:0007094: mitotic spindle assembly checkpoint	1.25E-03
51	GO:1902183: regulation of shoot apical meristem development	1.25E-03
52	GO:0010158: abaxial cell fate specification	1.25E-03
53	GO:0006656: phosphatidylcholine biosynthetic process	1.25E-03
54	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.53E-03
55	GO:0000470: maturation of LSU-rRNA	1.53E-03
56	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.53E-03
57	GO:0009854: oxidative photosynthetic carbon pathway	1.83E-03
58	GO:0010067: procambium histogenesis	1.83E-03
59	GO:0042372: phylloquinone biosynthetic process	1.83E-03
60	GO:0009942: longitudinal axis specification	1.83E-03
61	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.15E-03
62	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-03
63	GO:1900056: negative regulation of leaf senescence	2.15E-03
64	GO:0048437: floral organ development	2.15E-03
65	GO:0010492: maintenance of shoot apical meristem identity	2.49E-03
66	GO:0048564: photosystem I assembly	2.49E-03
67	GO:0006605: protein targeting	2.49E-03
68	GO:0032508: DNA duplex unwinding	2.49E-03
69	GO:0009910: negative regulation of flower development	2.51E-03
70	GO:0009853: photorespiration	2.75E-03
71	GO:0010093: specification of floral organ identity	2.85E-03
72	GO:0006002: fructose 6-phosphate metabolic process	2.85E-03
73	GO:0032544: plastid translation	2.85E-03
74	GO:0006098: pentose-phosphate shunt	3.22E-03
75	GO:0010206: photosystem II repair	3.22E-03
76	GO:2000024: regulation of leaf development	3.22E-03
77	GO:0010380: regulation of chlorophyll biosynthetic process	3.60E-03
78	GO:0006535: cysteine biosynthetic process from serine	4.00E-03
79	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.30E-03
80	GO:0055114: oxidation-reduction process	4.38E-03
81	GO:0048229: gametophyte development	4.42E-03
82	GO:0006816: calcium ion transport	4.42E-03
83	GO:0019684: photosynthesis, light reaction	4.42E-03
84	GO:0046777: protein autophosphorylation	4.49E-03
85	GO:0018107: peptidyl-threonine phosphorylation	5.30E-03
86	GO:0010075: regulation of meristem growth	5.30E-03
87	GO:0009767: photosynthetic electron transport chain	5.30E-03
88	GO:0010102: lateral root morphogenesis	5.30E-03
89	GO:0006108: malate metabolic process	5.30E-03
90	GO:0006096: glycolytic process	5.62E-03
91	GO:0010223: secondary shoot formation	5.76E-03
92	GO:0009934: regulation of meristem structural organization	5.76E-03
93	GO:0009933: meristem structural organization	5.76E-03
94	GO:0009825: multidimensional cell growth	6.23E-03
95	GO:0018105: peptidyl-serine phosphorylation	6.96E-03
96	GO:0019344: cysteine biosynthetic process	7.22E-03
97	GO:0009944: polarity specification of adaxial/abaxial axis	7.22E-03
98	GO:0051017: actin filament bundle assembly	7.22E-03
99	GO:0006289: nucleotide-excision repair	7.22E-03
100	GO:0008152: metabolic process	7.65E-03
101	GO:0016575: histone deacetylation	7.73E-03
102	GO:0006874: cellular calcium ion homeostasis	7.73E-03
103	GO:0043622: cortical microtubule organization	7.73E-03
104	GO:0061077: chaperone-mediated protein folding	8.26E-03
105	GO:0051321: meiotic cell cycle	8.26E-03
106	GO:0080092: regulation of pollen tube growth	8.79E-03
107	GO:0009845: seed germination	9.16E-03
108	GO:0001944: vasculature development	9.35E-03
109	GO:0009686: gibberellin biosynthetic process	9.35E-03
110	GO:0009790: embryo development	9.88E-03
111	GO:0010089: xylem development	9.92E-03
112	GO:0010091: trichome branching	9.92E-03
113	GO:0006633: fatty acid biosynthetic process	1.06E-02
114	GO:0010051: xylem and phloem pattern formation	1.11E-02
115	GO:0048653: anther development	1.11E-02
116	GO:0042631: cellular response to water deprivation	1.11E-02
117	GO:0000226: microtubule cytoskeleton organization	1.11E-02
118	GO:0006468: protein phosphorylation	1.16E-02
119	GO:0010268: brassinosteroid homeostasis	1.17E-02
120	GO:0010154: fruit development	1.17E-02
121	GO:0009451: RNA modification	1.20E-02
122	GO:0007059: chromosome segregation	1.23E-02
123	GO:0009646: response to absence of light	1.23E-02
124	GO:0016132: brassinosteroid biosynthetic process	1.36E-02
125	GO:0009416: response to light stimulus	1.40E-02
126	GO:0009630: gravitropism	1.42E-02
127	GO:0016032: viral process	1.42E-02
128	GO:0030163: protein catabolic process	1.49E-02
129	GO:0010090: trichome morphogenesis	1.49E-02
130	GO:0016125: sterol metabolic process	1.55E-02
131	GO:0071805: potassium ion transmembrane transport	1.62E-02
132	GO:0006810: transport	1.62E-02
133	GO:0005975: carbohydrate metabolic process	1.70E-02
134	GO:0001666: response to hypoxia	1.76E-02
135	GO:0010027: thylakoid membrane organization	1.76E-02
136	GO:0009658: chloroplast organization	1.82E-02
137	GO:0042254: ribosome biogenesis	1.85E-02
138	GO:0009832: plant-type cell wall biogenesis	2.20E-02
139	GO:0006499: N-terminal protein myristoylation	2.28E-02
140	GO:0009631: cold acclimation	2.36E-02
141	GO:0045087: innate immune response	2.51E-02
142	GO:0006099: tricarboxylic acid cycle	2.60E-02
143	GO:0045454: cell redox homeostasis	2.70E-02
144	GO:0006631: fatty acid metabolic process	2.84E-02
145	GO:0009640: photomorphogenesis	3.01E-02
146	GO:0006397: mRNA processing	3.47E-02
147	GO:0048364: root development	3.47E-02
148	GO:0006813: potassium ion transport	3.72E-02
149	GO:0009909: regulation of flower development	4.00E-02

Rank	GO Term	Adjusted P value
1	GO:0008465: glycerate dehydrogenase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
10	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
11	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0043014: alpha-tubulin binding	0.00E+00
14	GO:0008266: poly(U) RNA binding	1.13E-05
15	GO:0004332: fructose-bisphosphate aldolase activity	3.80E-05
16	GO:0005524: ATP binding	4.13E-05
17	GO:0008066: glutamate receptor activity	1.37E-04
18	GO:0010242: oxygen evolving activity	1.37E-04
19	GO:0051777: ent-kaurenoate oxidase activity	1.37E-04
20	GO:0004856: xylulokinase activity	1.37E-04
21	GO:0045485: omega-6 fatty acid desaturase activity	1.37E-04
22	GO:0008568: microtubule-severing ATPase activity	1.37E-04
23	GO:0008746: NAD(P)+ transhydrogenase activity	1.37E-04
24	GO:0050017: L-3-cyanoalanine synthase activity	3.16E-04
25	GO:0004362: glutathione-disulfide reductase activity	3.16E-04
26	GO:0004312: fatty acid synthase activity	3.16E-04
27	GO:0019172: glyoxalase III activity	3.16E-04
28	GO:0008728: GTP diphosphokinase activity	3.16E-04
29	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.16E-04
30	GO:0005528: FK506 binding	4.93E-04
31	GO:0005515: protein binding	5.05E-04
32	GO:0016805: dipeptidase activity	5.20E-04
33	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.20E-04
34	GO:0015462: ATPase-coupled protein transmembrane transporter activity	5.20E-04
35	GO:0004180: carboxypeptidase activity	5.20E-04
36	GO:0004148: dihydrolipoyl dehydrogenase activity	5.20E-04
37	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.20E-04
38	GO:0015079: potassium ion transmembrane transporter activity	5.43E-04
39	GO:0016301: kinase activity	6.84E-04
40	GO:0019201: nucleotide kinase activity	7.44E-04
41	GO:0048487: beta-tubulin binding	7.44E-04
42	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.85E-04
43	GO:0008453: alanine-glyoxylate transaminase activity	9.85E-04
44	GO:0070628: proteasome binding	9.85E-04
45	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.25E-03
46	GO:0016615: malate dehydrogenase activity	1.53E-03
47	GO:2001070: starch binding	1.53E-03
48	GO:0031593: polyubiquitin binding	1.53E-03
49	GO:0042578: phosphoric ester hydrolase activity	1.53E-03
50	GO:0004462: lactoylglutathione lyase activity	1.53E-03
51	GO:0004124: cysteine synthase activity	1.83E-03
52	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.83E-03
53	GO:0030060: L-malate dehydrogenase activity	1.83E-03
54	GO:0004017: adenylate kinase activity	1.83E-03
55	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.83E-03
56	GO:0004222: metalloendopeptidase activity	2.40E-03
57	GO:0043022: ribosome binding	2.49E-03
58	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	2.85E-03
59	GO:0071949: FAD binding	3.22E-03
60	GO:0016491: oxidoreductase activity	3.73E-03
61	GO:0035091: phosphatidylinositol binding	3.82E-03
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.12E-03
63	GO:0004674: protein serine/threonine kinase activity	4.42E-03
64	GO:0015386: potassium:proton antiporter activity	4.42E-03
65	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.42E-03
66	GO:0004672: protein kinase activity	4.51E-03
67	GO:0005262: calcium channel activity	5.30E-03
68	GO:0005217: intracellular ligand-gated ion channel activity	6.23E-03
69	GO:0004970: ionotropic glutamate receptor activity	6.23E-03
70	GO:0003954: NADH dehydrogenase activity	7.22E-03
71	GO:0004407: histone deacetylase activity	7.22E-03
72	GO:0043130: ubiquitin binding	7.22E-03
73	GO:0005509: calcium ion binding	8.04E-03
74	GO:0004176: ATP-dependent peptidase activity	8.26E-03
75	GO:0033612: receptor serine/threonine kinase binding	8.26E-03
76	GO:0019843: rRNA binding	8.46E-03
77	GO:0003723: RNA binding	1.19E-02
78	GO:0008017: microtubule binding	1.22E-02
79	GO:0050662: coenzyme binding	1.23E-02
80	GO:0048038: quinone binding	1.36E-02
81	GO:0051015: actin filament binding	1.49E-02
82	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.49E-02
83	GO:0042802: identical protein binding	1.49E-02
84	GO:0003684: damaged DNA binding	1.55E-02
85	GO:0008237: metallopeptidase activity	1.62E-02
86	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.90E-02
87	GO:0004683: calmodulin-dependent protein kinase activity	1.98E-02
88	GO:0050660: flavin adenine dinucleotide binding	2.10E-02
89	GO:0005096: GTPase activator activity	2.20E-02
90	GO:0004497: monooxygenase activity	2.25E-02
91	GO:0050897: cobalt ion binding	2.36E-02
92	GO:0003746: translation elongation factor activity	2.51E-02
93	GO:0050661: NADP binding	2.76E-02
94	GO:0016787: hydrolase activity	2.84E-02
95	GO:0043621: protein self-association	3.19E-02
96	GO:0051287: NAD binding	3.45E-02
97	GO:0004519: endonuclease activity	3.61E-02
98	GO:0003824: catalytic activity	3.81E-02
99	GO:0016298: lipase activity	3.82E-02
100	GO:0003777: microtubule motor activity	4.00E-02
101	GO:0016874: ligase activity	4.58E-02
102	GO:0008289: lipid binding	4.61E-02
103	GO:0003779: actin binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.26E-20
2	GO:0009534: chloroplast thylakoid	1.28E-13
3	GO:0009535: chloroplast thylakoid membrane	4.84E-12
4	GO:0009570: chloroplast stroma	1.41E-11
5	GO:0009941: chloroplast envelope	1.00E-09
6	GO:0009579: thylakoid	2.70E-06
7	GO:0030095: chloroplast photosystem II	1.13E-05
8	GO:0009543: chloroplast thylakoid lumen	1.15E-05
9	GO:0009344: nitrite reductase complex [NAD(P)H]	1.37E-04
10	GO:0010287: plastoglobule	1.39E-04
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.44E-04
12	GO:0031304: intrinsic component of mitochondrial inner membrane	3.16E-04
13	GO:0009654: photosystem II oxygen evolving complex	5.43E-04
14	GO:0032432: actin filament bundle	7.44E-04
15	GO:0005828: kinetochore microtubule	9.85E-04
16	GO:0019898: extrinsic component of membrane	1.10E-03
17	GO:0000776: kinetochore	1.25E-03
18	GO:0030529: intracellular ribonucleoprotein complex	1.68E-03
19	GO:0000777: condensed chromosome kinetochore	1.83E-03
20	GO:0048046: apoplast	2.28E-03
21	GO:0031977: thylakoid lumen	3.26E-03
22	GO:0005876: spindle microtubule	3.60E-03
23	GO:0016324: apical plasma membrane	4.00E-03
24	GO:0005884: actin filament	4.42E-03
25	GO:0032040: small-subunit processome	4.85E-03
26	GO:0009508: plastid chromosome	5.30E-03
27	GO:0009574: preprophase band	5.30E-03
28	GO:0009706: chloroplast inner membrane	6.76E-03
29	GO:0042651: thylakoid membrane	7.73E-03
30	GO:0009532: plastid stroma	8.26E-03
31	GO:0009295: nucleoid	1.62E-02
32	GO:0005874: microtubule	2.18E-02
33	GO:0031969: chloroplast membrane	2.25E-02
34	GO:0043231: intracellular membrane-bounded organelle	3.66E-02
35	GO:0005747: mitochondrial respiratory chain complex I	4.29E-02
36	GO:0005886: plasma membrane	4.39E-02