co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G57345

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019323: pentose catabolic process	0.00E+00
2	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0042820: vitamin B6 catabolic process	0.00E+00
9	GO:0015979: photosynthesis	2.89E-19
10	GO:0015995: chlorophyll biosynthetic process	2.48E-14
11	GO:0009773: photosynthetic electron transport in photosystem I	6.16E-11
12	GO:0010207: photosystem II assembly	2.28E-08
13	GO:0090391: granum assembly	2.50E-08
14	GO:0010196: nonphotochemical quenching	4.36E-06
15	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.89E-05
16	GO:0010027: thylakoid membrane organization	4.74E-05
17	GO:0009409: response to cold	5.20E-05
18	GO:0019464: glycine decarboxylation via glycine cleavage system	5.21E-05
19	GO:0009765: photosynthesis, light harvesting	5.21E-05
20	GO:0031365: N-terminal protein amino acid modification	8.25E-05
21	GO:0009735: response to cytokinin	2.07E-04
22	GO:0009704: de-etiolation	2.73E-04
23	GO:0043686: co-translational protein modification	2.80E-04
24	GO:0071461: cellular response to redox state	2.80E-04
25	GO:1902458: positive regulation of stomatal opening	2.80E-04
26	GO:0034337: RNA folding	2.80E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	2.80E-04
28	GO:0071277: cellular response to calcium ion	2.80E-04
29	GO:0043489: RNA stabilization	2.80E-04
30	GO:0044262: cellular carbohydrate metabolic process	2.80E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	2.80E-04
32	GO:1904964: positive regulation of phytol biosynthetic process	2.80E-04
33	GO:0006783: heme biosynthetic process	4.05E-04
34	GO:0009658: chloroplast organization	5.00E-04
35	GO:0006782: protoporphyrinogen IX biosynthetic process	5.60E-04
36	GO:0006729: tetrahydrobiopterin biosynthetic process	6.14E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.14E-04
38	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.14E-04
39	GO:0080040: positive regulation of cellular response to phosphate starvation	6.14E-04
40	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.14E-04
41	GO:0080005: photosystem stoichiometry adjustment	6.14E-04
42	GO:0019388: galactose catabolic process	6.14E-04
43	GO:0018026: peptidyl-lysine monomethylation	6.14E-04
44	GO:0018298: protein-chromophore linkage	7.69E-04
45	GO:0006006: glucose metabolic process	8.37E-04
46	GO:0019253: reductive pentose-phosphate cycle	9.39E-04
47	GO:0006000: fructose metabolic process	9.96E-04
48	GO:0042742: defense response to bacterium	1.27E-03
49	GO:0071484: cellular response to light intensity	1.42E-03
50	GO:0009102: biotin biosynthetic process	1.42E-03
51	GO:0009152: purine ribonucleotide biosynthetic process	1.42E-03
52	GO:0046653: tetrahydrofolate metabolic process	1.42E-03
53	GO:0009590: detection of gravity	1.42E-03
54	GO:0009768: photosynthesis, light harvesting in photosystem I	1.42E-03
55	GO:0050482: arachidonic acid secretion	1.42E-03
56	GO:2001141: regulation of RNA biosynthetic process	1.42E-03
57	GO:0015976: carbon utilization	1.91E-03
58	GO:0045727: positive regulation of translation	1.91E-03
59	GO:2000122: negative regulation of stomatal complex development	1.91E-03
60	GO:0006546: glycine catabolic process	1.91E-03
61	GO:0006021: inositol biosynthetic process	1.91E-03
62	GO:0010037: response to carbon dioxide	1.91E-03
63	GO:0016117: carotenoid biosynthetic process	2.19E-03
64	GO:0000413: protein peptidyl-prolyl isomerization	2.36E-03
65	GO:0016123: xanthophyll biosynthetic process	2.43E-03
66	GO:0034052: positive regulation of plant-type hypersensitive response	2.43E-03
67	GO:0016120: carotene biosynthetic process	2.43E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	2.43E-03
69	GO:0042254: ribosome biogenesis	2.49E-03
70	GO:0019252: starch biosynthetic process	2.93E-03
71	GO:0006655: phosphatidylglycerol biosynthetic process	3.00E-03
72	GO:0010190: cytochrome b6f complex assembly	3.00E-03
73	GO:0046855: inositol phosphate dephosphorylation	3.00E-03
74	GO:0080167: response to karrikin	3.36E-03
75	GO:0055114: oxidation-reduction process	3.51E-03
76	GO:0010555: response to mannitol	3.62E-03
77	GO:1901259: chloroplast rRNA processing	3.62E-03
78	GO:0010189: vitamin E biosynthetic process	3.62E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	4.26E-03
80	GO:0009769: photosynthesis, light harvesting in photosystem II	4.26E-03
81	GO:0009645: response to low light intensity stimulus	4.26E-03
82	GO:0006400: tRNA modification	4.26E-03
83	GO:0006644: phospholipid metabolic process	4.95E-03
84	GO:0048564: photosystem I assembly	4.95E-03
85	GO:0005978: glycogen biosynthetic process	4.95E-03
86	GO:0009819: drought recovery	4.95E-03
87	GO:0009642: response to light intensity	4.95E-03
88	GO:0042255: ribosome assembly	4.95E-03
89	GO:0006353: DNA-templated transcription, termination	4.95E-03
90	GO:0043068: positive regulation of programmed cell death	4.95E-03
91	GO:2000070: regulation of response to water deprivation	4.95E-03
92	GO:0017004: cytochrome complex assembly	5.67E-03
93	GO:0006002: fructose 6-phosphate metabolic process	5.67E-03
94	GO:0071482: cellular response to light stimulus	5.67E-03
95	GO:0015996: chlorophyll catabolic process	5.67E-03
96	GO:0007186: G-protein coupled receptor signaling pathway	5.67E-03
97	GO:0032544: plastid translation	5.67E-03
98	GO:0009817: defense response to fungus, incompatible interaction	5.91E-03
99	GO:0010206: photosystem II repair	6.43E-03
100	GO:0090333: regulation of stomatal closure	6.43E-03
101	GO:0010218: response to far red light	6.51E-03
102	GO:0006779: porphyrin-containing compound biosynthetic process	7.22E-03
103	GO:0009637: response to blue light	7.49E-03
104	GO:0009853: photorespiration	7.49E-03
105	GO:0006412: translation	7.63E-03
106	GO:0006949: syncytium formation	8.04E-03
107	GO:0019684: photosynthesis, light reaction	8.90E-03
108	GO:0006352: DNA-templated transcription, initiation	8.90E-03
109	GO:0000272: polysaccharide catabolic process	8.90E-03
110	GO:0018119: peptidyl-cysteine S-nitrosylation	8.90E-03
111	GO:0010114: response to red light	9.67E-03
112	GO:0006790: sulfur compound metabolic process	9.79E-03
113	GO:0016024: CDP-diacylglycerol biosynthetic process	9.79E-03
114	GO:0045037: protein import into chloroplast stroma	9.79E-03
115	GO:0009725: response to hormone	1.07E-02
116	GO:0006094: gluconeogenesis	1.07E-02
117	GO:0009767: photosynthetic electron transport chain	1.07E-02
118	GO:0005986: sucrose biosynthetic process	1.07E-02
119	GO:0010628: positive regulation of gene expression	1.07E-02
120	GO:0010020: chloroplast fission	1.17E-02
121	GO:0046854: phosphatidylinositol phosphorylation	1.26E-02
122	GO:0010167: response to nitrate	1.26E-02
123	GO:0019853: L-ascorbic acid biosynthetic process	1.26E-02
124	GO:0019344: cysteine biosynthetic process	1.47E-02
125	GO:0000027: ribosomal large subunit assembly	1.47E-02
126	GO:0051017: actin filament bundle assembly	1.47E-02
127	GO:0019953: sexual reproduction	1.58E-02
128	GO:0061077: chaperone-mediated protein folding	1.68E-02
129	GO:0009269: response to desiccation	1.68E-02
130	GO:0009814: defense response, incompatible interaction	1.80E-02
131	GO:0045454: cell redox homeostasis	1.87E-02
132	GO:0006012: galactose metabolic process	1.91E-02
133	GO:0006869: lipid transport	2.10E-02
134	GO:0042631: cellular response to water deprivation	2.27E-02
135	GO:0042335: cuticle development	2.27E-02
136	GO:0010182: sugar mediated signaling pathway	2.39E-02
137	GO:0015986: ATP synthesis coupled proton transport	2.52E-02
138	GO:0005975: carbohydrate metabolic process	2.75E-02
139	GO:0032502: developmental process	2.91E-02
140	GO:0009828: plant-type cell wall loosening	3.19E-02
141	GO:0009627: systemic acquired resistance	3.91E-02
142	GO:0042128: nitrate assimilation	3.91E-02
143	GO:0010411: xyloglucan metabolic process	4.06E-02
144	GO:0007568: aging	4.84E-02
145	GO:0009631: cold acclimation	4.84E-02
146	GO:0010119: regulation of stomatal movement	4.84E-02
147	GO:0009416: response to light stimulus	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
7	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
8	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
9	GO:0090711: FMN hydrolase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0045550: geranylgeranyl reductase activity	0.00E+00
13	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
14	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
15	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
16	GO:0019843: rRNA binding	7.07E-07
17	GO:0051920: peroxiredoxin activity	2.71E-06
18	GO:0016209: antioxidant activity	6.61E-06
19	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.89E-05
20	GO:0016851: magnesium chelatase activity	2.89E-05
21	GO:0016168: chlorophyll binding	5.28E-05
22	GO:0005509: calcium ion binding	6.71E-05
23	GO:0003959: NADPH dehydrogenase activity	8.25E-05
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.46E-04
25	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.80E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	2.80E-04
27	GO:0042586: peptide deformylase activity	2.80E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.80E-04
29	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.80E-04
30	GO:0008883: glutamyl-tRNA reductase activity	6.14E-04
31	GO:0010297: heteropolysaccharide binding	6.14E-04
32	GO:0052832: inositol monophosphate 3-phosphatase activity	6.14E-04
33	GO:0004750: ribulose-phosphate 3-epimerase activity	6.14E-04
34	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.14E-04
35	GO:0008934: inositol monophosphate 1-phosphatase activity	6.14E-04
36	GO:0052833: inositol monophosphate 4-phosphatase activity	6.14E-04
37	GO:0016630: protochlorophyllide reductase activity	6.14E-04
38	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.14E-04
39	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.14E-04
40	GO:0004614: phosphoglucomutase activity	6.14E-04
41	GO:0008266: poly(U) RNA binding	9.39E-04
42	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.96E-04
43	GO:0070402: NADPH binding	9.96E-04
44	GO:0008864: formyltetrahydrofolate deformylase activity	9.96E-04
45	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.96E-04
46	GO:0004324: ferredoxin-NADP+ reductase activity	9.96E-04
47	GO:0010277: chlorophyllide a oxygenase [overall] activity	9.96E-04
48	GO:0004751: ribose-5-phosphate isomerase activity	9.96E-04
49	GO:0031409: pigment binding	1.16E-03
50	GO:0051539: 4 iron, 4 sulfur cluster binding	1.21E-03
51	GO:0005528: FK506 binding	1.29E-03
52	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.42E-03
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.56E-03
54	GO:0022891: substrate-specific transmembrane transporter activity	1.86E-03
55	GO:0016279: protein-lysine N-methyltransferase activity	1.91E-03
56	GO:0001053: plastid sigma factor activity	1.91E-03
57	GO:0016987: sigma factor activity	1.91E-03
58	GO:1990137: plant seed peroxidase activity	1.91E-03
59	GO:0052793: pectin acetylesterase activity	1.91E-03
60	GO:0043495: protein anchor	1.91E-03
61	GO:0004601: peroxidase activity	2.42E-03
62	GO:0004623: phospholipase A2 activity	2.43E-03
63	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.00E-03
64	GO:0042578: phosphoric ester hydrolase activity	3.00E-03
65	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.62E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.62E-03
67	GO:0008235: metalloexopeptidase activity	4.26E-03
68	GO:0019899: enzyme binding	4.26E-03
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.46E-03
70	GO:0004034: aldose 1-epimerase activity	4.95E-03
71	GO:0004033: aldo-keto reductase (NADP) activity	4.95E-03
72	GO:0052747: sinapyl alcohol dehydrogenase activity	4.95E-03
73	GO:0003735: structural constituent of ribosome	5.70E-03
74	GO:0050661: NADP binding	8.54E-03
75	GO:0004177: aminopeptidase activity	8.90E-03
76	GO:0047372: acylglycerol lipase activity	8.90E-03
77	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.79E-03
78	GO:0004089: carbonate dehydratase activity	1.07E-02
79	GO:0031072: heat shock protein binding	1.07E-02
80	GO:0005198: structural molecule activity	1.09E-02
81	GO:0003690: double-stranded DNA binding	1.35E-02
82	GO:0043424: protein histidine kinase binding	1.58E-02
83	GO:0030570: pectate lyase activity	1.91E-02
84	GO:0003727: single-stranded RNA binding	2.03E-02
85	GO:0016491: oxidoreductase activity	2.17E-02
86	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.39E-02
87	GO:0016853: isomerase activity	2.52E-02
88	GO:0050662: coenzyme binding	2.52E-02
89	GO:0004872: receptor activity	2.65E-02
90	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.78E-02
91	GO:0051015: actin filament binding	3.05E-02
92	GO:0008237: metallopeptidase activity	3.33E-02
93	GO:0008289: lipid binding	3.67E-02
94	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.06E-02
95	GO:0042802: identical protein binding	4.09E-02
96	GO:0046872: metal ion binding	4.34E-02
97	GO:0003723: RNA binding	4.45E-02
98	GO:0004222: metalloendopeptidase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	1.15E-65
3	GO:0009535: chloroplast thylakoid membrane	5.12E-53
4	GO:0009579: thylakoid	2.27E-38
5	GO:0009534: chloroplast thylakoid	3.81E-35
6	GO:0009543: chloroplast thylakoid lumen	2.84E-27
7	GO:0009570: chloroplast stroma	3.80E-27
8	GO:0009941: chloroplast envelope	7.53E-24
9	GO:0031977: thylakoid lumen	1.55E-16
10	GO:0009654: photosystem II oxygen evolving complex	1.52E-11
11	GO:0019898: extrinsic component of membrane	3.05E-10
12	GO:0010319: stromule	1.08E-09
13	GO:0030095: chloroplast photosystem II	2.28E-08
14	GO:0010287: plastoglobule	2.92E-08
15	GO:0048046: apoplast	1.36E-06
16	GO:0031969: chloroplast membrane	1.69E-06
17	GO:0030093: chloroplast photosystem I	3.59E-06
18	GO:0010007: magnesium chelatase complex	1.29E-05
19	GO:0009523: photosystem II	1.96E-05
20	GO:0005960: glycine cleavage complex	2.89E-05
21	GO:0009517: PSII associated light-harvesting complex II	5.21E-05
22	GO:0042651: thylakoid membrane	1.10E-04
23	GO:0009344: nitrite reductase complex [NAD(P)H]	2.80E-04
24	GO:0009522: photosystem I	2.82E-04
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.05E-04
26	GO:0005840: ribosome	4.14E-04
27	GO:0009706: chloroplast inner membrane	5.45E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.14E-04
29	GO:0009508: plastid chromosome	8.37E-04
30	GO:0009528: plastid inner membrane	9.96E-04
31	GO:0030076: light-harvesting complex	1.05E-03
32	GO:0009532: plastid stroma	1.56E-03
33	GO:0009527: plastid outer membrane	1.91E-03
34	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.00E-03
35	GO:0009295: nucleoid	4.03E-03
36	GO:0009533: chloroplast stromal thylakoid	4.26E-03
37	GO:0016020: membrane	4.33E-03
38	GO:0009538: photosystem I reaction center	4.95E-03
39	GO:0005811: lipid particle	5.67E-03
40	GO:0032040: small-subunit processome	9.79E-03
41	GO:0043234: protein complex	1.37E-02
42	GO:0015935: small ribosomal subunit	1.68E-02
43	GO:0031410: cytoplasmic vesicle	1.80E-02
44	GO:0015629: actin cytoskeleton	1.91E-02
45	GO:0030529: intracellular ribonucleoprotein complex	3.62E-02
46	GO:0046658: anchored component of plasma membrane	4.26E-02
47	GO:0009707: chloroplast outer membrane	4.37E-02