co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010480: microsporocyte differentiation	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0045176: apical protein localization	0.00E+00
6	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	3.11E-05
7	GO:0048437: floral organ development	5.92E-05
8	GO:0010206: photosystem II repair	1.20E-04
9	GO:0031338: regulation of vesicle fusion	1.22E-04
10	GO:0043087: regulation of GTPase activity	1.22E-04
11	GO:0006824: cobalt ion transport	1.22E-04
12	GO:0000476: maturation of 4.5S rRNA	1.22E-04
13	GO:0000967: rRNA 5'-end processing	1.22E-04
14	GO:0015995: chlorophyll biosynthetic process	1.43E-04
15	GO:0048229: gametophyte development	2.00E-04
16	GO:0010075: regulation of meristem growth	2.65E-04
17	GO:0010541: acropetal auxin transport	2.82E-04
18	GO:0034470: ncRNA processing	2.82E-04
19	GO:0034755: iron ion transmembrane transport	2.82E-04
20	GO:0010115: regulation of abscisic acid biosynthetic process	2.82E-04
21	GO:0010540: basipetal auxin transport	3.00E-04
22	GO:0009934: regulation of meristem structural organization	3.00E-04
23	GO:0090630: activation of GTPase activity	4.65E-04
24	GO:2001295: malonyl-CoA biosynthetic process	4.65E-04
25	GO:0010160: formation of animal organ boundary	4.65E-04
26	GO:0006518: peptide metabolic process	4.65E-04
27	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.93E-04
28	GO:0048443: stamen development	6.53E-04
29	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.66E-04
30	GO:0007231: osmosensory signaling pathway	6.66E-04
31	GO:0051639: actin filament network formation	6.66E-04
32	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.66E-04
33	GO:0051016: barbed-end actin filament capping	6.66E-04
34	GO:0010088: phloem development	6.66E-04
35	GO:0048653: anther development	7.61E-04
36	GO:0010021: amylopectin biosynthetic process	8.84E-04
37	GO:0051764: actin crosslink formation	8.84E-04
38	GO:0006085: acetyl-CoA biosynthetic process	8.84E-04
39	GO:0045727: positive regulation of translation	8.84E-04
40	GO:0015846: polyamine transport	8.84E-04
41	GO:0033500: carbohydrate homeostasis	8.84E-04
42	GO:0031122: cytoplasmic microtubule organization	8.84E-04
43	GO:0045038: protein import into chloroplast thylakoid membrane	1.12E-03
44	GO:0000304: response to singlet oxygen	1.12E-03
45	GO:0008152: metabolic process	1.17E-03
46	GO:0006751: glutathione catabolic process	1.37E-03
47	GO:0048827: phyllome development	1.37E-03
48	GO:0042549: photosystem II stabilization	1.37E-03
49	GO:0010256: endomembrane system organization	1.37E-03
50	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.37E-03
51	GO:0060918: auxin transport	1.37E-03
52	GO:0010027: thylakoid membrane organization	1.42E-03
53	GO:0009942: longitudinal axis specification	1.64E-03
54	GO:0009772: photosynthetic electron transport in photosystem II	1.92E-03
55	GO:0051693: actin filament capping	1.92E-03
56	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.92E-03
57	GO:0009733: response to auxin	2.08E-03
58	GO:0006605: protein targeting	2.22E-03
59	GO:0008610: lipid biosynthetic process	2.22E-03
60	GO:0032544: plastid translation	2.54E-03
61	GO:0009657: plastid organization	2.54E-03
62	GO:0048589: developmental growth	2.87E-03
63	GO:0000902: cell morphogenesis	2.87E-03
64	GO:0046685: response to arsenic-containing substance	2.87E-03
65	GO:0048507: meristem development	2.87E-03
66	GO:0006779: porphyrin-containing compound biosynthetic process	3.21E-03
67	GO:1900865: chloroplast RNA modification	3.21E-03
68	GO:0045036: protein targeting to chloroplast	3.57E-03
69	GO:0006782: protoporphyrinogen IX biosynthetic process	3.57E-03
70	GO:0019538: protein metabolic process	3.57E-03
71	GO:1903507: negative regulation of nucleic acid-templated transcription	3.94E-03
72	GO:0006816: calcium ion transport	3.94E-03
73	GO:0009773: photosynthetic electron transport in photosystem I	3.94E-03
74	GO:0006415: translational termination	3.94E-03
75	GO:0006364: rRNA processing	4.02E-03
76	GO:0008361: regulation of cell size	4.32E-03
77	GO:0010152: pollen maturation	4.32E-03
78	GO:0010229: inflorescence development	4.71E-03
79	GO:0030036: actin cytoskeleton organization	4.71E-03
80	GO:0009718: anthocyanin-containing compound biosynthetic process	4.71E-03
81	GO:0010102: lateral root morphogenesis	4.71E-03
82	GO:0007015: actin filament organization	5.12E-03
83	GO:0010143: cutin biosynthetic process	5.12E-03
84	GO:0010030: positive regulation of seed germination	5.54E-03
85	GO:0070588: calcium ion transmembrane transport	5.54E-03
86	GO:0048364: root development	5.74E-03
87	GO:0051017: actin filament bundle assembly	6.42E-03
88	GO:0007010: cytoskeleton organization	6.42E-03
89	GO:0007017: microtubule-based process	6.87E-03
90	GO:0031408: oxylipin biosynthetic process	7.34E-03
91	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.81E-03
92	GO:0009686: gibberellin biosynthetic process	8.30E-03
93	GO:0009306: protein secretion	8.80E-03
94	GO:0006633: fatty acid biosynthetic process	8.97E-03
95	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.31E-03
96	GO:0010051: xylem and phloem pattern formation	9.83E-03
97	GO:0042631: cellular response to water deprivation	9.83E-03
98	GO:0048868: pollen tube development	1.04E-02
99	GO:0010268: brassinosteroid homeostasis	1.04E-02
100	GO:0010305: leaf vascular tissue pattern formation	1.04E-02
101	GO:0009958: positive gravitropism	1.04E-02
102	GO:0009416: response to light stimulus	1.13E-02
103	GO:0019252: starch biosynthetic process	1.15E-02
104	GO:0009791: post-embryonic development	1.15E-02
105	GO:0048825: cotyledon development	1.15E-02
106	GO:0016132: brassinosteroid biosynthetic process	1.20E-02
107	GO:0080156: mitochondrial mRNA modification	1.20E-02
108	GO:0071554: cell wall organization or biogenesis	1.20E-02
109	GO:0010583: response to cyclopentenone	1.26E-02
110	GO:1901657: glycosyl compound metabolic process	1.32E-02
111	GO:0005975: carbohydrate metabolic process	1.32E-02
112	GO:0030163: protein catabolic process	1.32E-02
113	GO:0016125: sterol metabolic process	1.38E-02
114	GO:0009639: response to red or far red light	1.38E-02
115	GO:0009911: positive regulation of flower development	1.56E-02
116	GO:0009816: defense response to bacterium, incompatible interaction	1.62E-02
117	GO:0009723: response to ethylene	1.77E-02
118	GO:0010218: response to far red light	2.02E-02
119	GO:0006811: ion transport	2.02E-02
120	GO:0046777: protein autophosphorylation	2.03E-02
121	GO:0048527: lateral root development	2.09E-02
122	GO:0009637: response to blue light	2.23E-02
123	GO:0009926: auxin polar transport	2.67E-02
124	GO:0009640: photomorphogenesis	2.67E-02
125	GO:0006855: drug transmembrane transport	2.98E-02
126	GO:0031347: regulation of defense response	3.06E-02
127	GO:0051603: proteolysis involved in cellular protein catabolic process	3.38E-02
128	GO:0006096: glycolytic process	3.72E-02
129	GO:0006508: proteolysis	3.74E-02
130	GO:0009734: auxin-activated signaling pathway	3.94E-02
131	GO:0018105: peptidyl-serine phosphorylation	4.33E-02
132	GO:0006396: RNA processing	4.33E-02
133	GO:0009908: flower development	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0030941: chloroplast targeting sequence binding	1.22E-04
7	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.22E-04
8	GO:0003867: 4-aminobutyrate transaminase activity	1.22E-04
9	GO:0051777: ent-kaurenoate oxidase activity	1.22E-04
10	GO:0004856: xylulokinase activity	1.22E-04
11	GO:0008568: microtubule-severing ATPase activity	1.22E-04
12	GO:0004802: transketolase activity	2.82E-04
13	GO:0003839: gamma-glutamylcyclotransferase activity	2.82E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	2.82E-04
15	GO:0004075: biotin carboxylase activity	4.65E-04
16	GO:0030267: glyoxylate reductase (NADP) activity	4.65E-04
17	GO:0004373: glycogen (starch) synthase activity	4.65E-04
18	GO:0004148: dihydrolipoyl dehydrogenase activity	4.65E-04
19	GO:0033612: receptor serine/threonine kinase binding	5.06E-04
20	GO:0016149: translation release factor activity, codon specific	6.66E-04
21	GO:0003878: ATP citrate synthase activity	6.66E-04
22	GO:0010011: auxin binding	8.84E-04
23	GO:0051861: glycolipid binding	8.84E-04
24	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.84E-04
25	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	8.84E-04
26	GO:0009011: starch synthase activity	8.84E-04
27	GO:0004252: serine-type endopeptidase activity	1.11E-03
28	GO:0003989: acetyl-CoA carboxylase activity	1.12E-03
29	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.12E-03
30	GO:0017137: Rab GTPase binding	1.12E-03
31	GO:0051015: actin filament binding	1.13E-03
32	GO:0042578: phosphoric ester hydrolase activity	1.37E-03
33	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.64E-03
34	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.64E-03
35	GO:0008236: serine-type peptidase activity	1.76E-03
36	GO:0004620: phospholipase activity	1.92E-03
37	GO:0005096: GTPase activator activity	1.94E-03
38	GO:0043022: ribosome binding	2.22E-03
39	GO:0004033: aldo-keto reductase (NADP) activity	2.22E-03
40	GO:0003747: translation release factor activity	2.87E-03
41	GO:0005381: iron ion transmembrane transporter activity	3.21E-03
42	GO:0043621: protein self-association	3.23E-03
43	GO:0005515: protein binding	4.27E-03
44	GO:0005262: calcium channel activity	4.71E-03
45	GO:0004565: beta-galactosidase activity	4.71E-03
46	GO:0010329: auxin efflux transmembrane transporter activity	4.71E-03
47	GO:0008266: poly(U) RNA binding	5.12E-03
48	GO:0005528: FK506 binding	6.42E-03
49	GO:0003714: transcription corepressor activity	6.42E-03
50	GO:0016787: hydrolase activity	6.46E-03
51	GO:0004707: MAP kinase activity	7.34E-03
52	GO:0050662: coenzyme binding	1.09E-02
53	GO:0048038: quinone binding	1.20E-02
54	GO:0005200: structural constituent of cytoskeleton	1.44E-02
55	GO:0016413: O-acetyltransferase activity	1.50E-02
56	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.69E-02
57	GO:0016301: kinase activity	1.71E-02
58	GO:0004683: calmodulin-dependent protein kinase activity	1.75E-02
59	GO:0102483: scopolin beta-glucosidase activity	1.75E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.88E-02
61	GO:0005516: calmodulin binding	1.89E-02
62	GO:0015238: drug transmembrane transporter activity	1.95E-02
63	GO:0004222: metalloendopeptidase activity	2.02E-02
64	GO:0008422: beta-glucosidase activity	2.37E-02
65	GO:0004871: signal transducer activity	2.38E-02
66	GO:0004185: serine-type carboxypeptidase activity	2.67E-02
67	GO:0004674: protein serine/threonine kinase activity	2.69E-02
68	GO:0035091: phosphatidylinositol binding	2.82E-02
69	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.98E-02
70	GO:0003777: microtubule motor activity	3.55E-02
71	GO:0003779: actin binding	4.15E-02
72	GO:0019843: rRNA binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009570: chloroplast stroma	2.49E-08
4	GO:0009507: chloroplast	2.95E-08
5	GO:0009941: chloroplast envelope	1.11E-05
6	GO:0009535: chloroplast thylakoid membrane	1.27E-04
7	GO:0009534: chloroplast thylakoid	1.27E-04
8	GO:0005884: actin filament	2.00E-04
9	GO:0008290: F-actin capping protein complex	2.82E-04
10	GO:0032432: actin filament bundle	6.66E-04
11	GO:0009346: citrate lyase complex	6.66E-04
12	GO:0009543: chloroplast thylakoid lumen	9.79E-04
13	GO:0005886: plasma membrane	1.04E-03
14	GO:0031359: integral component of chloroplast outer membrane	1.92E-03
15	GO:0009533: chloroplast stromal thylakoid	1.92E-03
16	GO:0009501: amyloplast	2.22E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.54E-03
18	GO:0031977: thylakoid lumen	2.76E-03
19	GO:0045298: tubulin complex	2.87E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.87E-03
21	GO:0009579: thylakoid	3.15E-03
22	GO:0009574: preprophase band	4.71E-03
23	GO:0043234: protein complex	5.98E-03
24	GO:0010287: plastoglobule	6.76E-03
25	GO:0042651: thylakoid membrane	6.87E-03
26	GO:0009505: plant-type cell wall	9.87E-03
27	GO:0005770: late endosome	1.04E-02
28	GO:0005874: microtubule	1.83E-02
29	GO:0009707: chloroplast outer membrane	1.88E-02
30	GO:0012505: endomembrane system	4.15E-02