co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G56350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0006099: tricarboxylic acid cycle	1.52E-06
3	GO:0006102: isocitrate metabolic process	1.95E-06
4	GO:0001676: long-chain fatty acid metabolic process	1.21E-05
5	GO:0034976: response to endoplasmic reticulum stress	2.72E-05
6	GO:0009697: salicylic acid biosynthetic process	3.65E-05
7	GO:0043248: proteasome assembly	5.43E-05
8	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.43E-05
9	GO:0006511: ubiquitin-dependent protein catabolic process	9.14E-05
10	GO:1990641: response to iron ion starvation	1.71E-04
11	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.71E-04
12	GO:1901183: positive regulation of camalexin biosynthetic process	1.71E-04
13	GO:0046244: salicylic acid catabolic process	1.71E-04
14	GO:0035266: meristem growth	1.71E-04
15	GO:0007292: female gamete generation	1.71E-04
16	GO:0006805: xenobiotic metabolic process	1.71E-04
17	GO:0009407: toxin catabolic process	3.58E-04
18	GO:0051788: response to misfolded protein	3.87E-04
19	GO:0006101: citrate metabolic process	3.87E-04
20	GO:1902000: homogentisate catabolic process	3.87E-04
21	GO:0008535: respiratory chain complex IV assembly	3.87E-04
22	GO:0097054: L-glutamate biosynthetic process	3.87E-04
23	GO:0051262: protein tetramerization	3.87E-04
24	GO:0010053: root epidermal cell differentiation	5.37E-04
25	GO:0009072: aromatic amino acid family metabolic process	6.32E-04
26	GO:0060968: regulation of gene silencing	6.32E-04
27	GO:0032940: secretion by cell	6.32E-04
28	GO:0009636: response to toxic substance	6.86E-04
29	GO:0009809: lignin biosynthetic process	8.60E-04
30	GO:0030433: ubiquitin-dependent ERAD pathway	8.69E-04
31	GO:0031348: negative regulation of defense response	8.69E-04
32	GO:0002239: response to oomycetes	9.04E-04
33	GO:0072334: UDP-galactose transmembrane transport	9.04E-04
34	GO:0009399: nitrogen fixation	9.04E-04
35	GO:0006537: glutamate biosynthetic process	9.04E-04
36	GO:0042823: pyridoxal phosphate biosynthetic process	9.04E-04
37	GO:2001289: lipid X metabolic process	9.04E-04
38	GO:0033356: UDP-L-arabinose metabolic process	1.20E-03
39	GO:0006542: glutamine biosynthetic process	1.20E-03
40	GO:0019676: ammonia assimilation cycle	1.20E-03
41	GO:0046345: abscisic acid catabolic process	1.20E-03
42	GO:0045454: cell redox homeostasis	1.51E-03
43	GO:0006090: pyruvate metabolic process	1.52E-03
44	GO:0030041: actin filament polymerization	1.52E-03
45	GO:0005513: detection of calcium ion	1.52E-03
46	GO:0006097: glyoxylate cycle	1.52E-03
47	GO:0007029: endoplasmic reticulum organization	1.52E-03
48	GO:0010193: response to ozone	1.57E-03
49	GO:0006796: phosphate-containing compound metabolic process	1.87E-03
50	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.87E-03
51	GO:0002238: response to molecule of fungal origin	1.87E-03
52	GO:0006014: D-ribose metabolic process	1.87E-03
53	GO:0010405: arabinogalactan protein metabolic process	1.87E-03
54	GO:0006751: glutathione catabolic process	1.87E-03
55	GO:0048827: phyllome development	1.87E-03
56	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.87E-03
57	GO:0048232: male gamete generation	1.87E-03
58	GO:0042372: phylloquinone biosynthetic process	2.24E-03
59	GO:0009612: response to mechanical stimulus	2.24E-03
60	GO:0015977: carbon fixation	2.24E-03
61	GO:0046686: response to cadmium ion	2.49E-03
62	GO:0043090: amino acid import	2.64E-03
63	GO:1900056: negative regulation of leaf senescence	2.64E-03
64	GO:0042773: ATP synthesis coupled electron transport	2.64E-03
65	GO:0050790: regulation of catalytic activity	2.64E-03
66	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.06E-03
67	GO:0006875: cellular metal ion homeostasis	3.06E-03
68	GO:0010078: maintenance of root meristem identity	3.06E-03
69	GO:0016559: peroxisome fission	3.06E-03
70	GO:0010043: response to zinc ion	3.39E-03
71	GO:0006002: fructose 6-phosphate metabolic process	3.50E-03
72	GO:0010120: camalexin biosynthetic process	3.50E-03
73	GO:0045087: innate immune response	3.71E-03
74	GO:0006979: response to oxidative stress	3.99E-03
75	GO:0006631: fatty acid metabolic process	4.41E-03
76	GO:0043067: regulation of programmed cell death	4.44E-03
77	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.44E-03
78	GO:0007064: mitotic sister chromatid cohesion	4.93E-03
79	GO:0048829: root cap development	4.93E-03
80	GO:0010015: root morphogenesis	5.45E-03
81	GO:0006855: drug transmembrane transport	5.57E-03
82	GO:0002213: defense response to insect	5.98E-03
83	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.98E-03
84	GO:0000266: mitochondrial fission	5.98E-03
85	GO:0006486: protein glycosylation	6.43E-03
86	GO:0006108: malate metabolic process	6.54E-03
87	GO:0051603: proteolysis involved in cellular protein catabolic process	6.66E-03
88	GO:0009933: meristem structural organization	7.11E-03
89	GO:0090351: seedling development	7.69E-03
90	GO:0070588: calcium ion transmembrane transport	7.69E-03
91	GO:0007010: cytoskeleton organization	8.92E-03
92	GO:0006487: protein N-linked glycosylation	8.92E-03
93	GO:0016226: iron-sulfur cluster assembly	1.09E-02
94	GO:0007005: mitochondrion organization	1.09E-02
95	GO:0019748: secondary metabolic process	1.09E-02
96	GO:0009651: response to salt stress	1.12E-02
97	GO:0010584: pollen exine formation	1.23E-02
98	GO:0042147: retrograde transport, endosome to Golgi	1.30E-02
99	GO:0010118: stomatal movement	1.37E-02
100	GO:0048868: pollen tube development	1.45E-02
101	GO:0010150: leaf senescence	1.59E-02
102	GO:0019252: starch biosynthetic process	1.60E-02
103	GO:0080156: mitochondrial mRNA modification	1.68E-02
104	GO:0002229: defense response to oomycetes	1.68E-02
105	GO:0000302: response to reactive oxygen species	1.68E-02
106	GO:0006891: intra-Golgi vesicle-mediated transport	1.68E-02
107	GO:0007264: small GTPase mediated signal transduction	1.76E-02
108	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.78E-02
109	GO:0030163: protein catabolic process	1.84E-02
110	GO:0009617: response to bacterium	1.90E-02
111	GO:0010252: auxin homeostasis	1.93E-02
112	GO:0009567: double fertilization forming a zygote and endosperm	1.93E-02
113	GO:0015031: protein transport	2.06E-02
114	GO:0055114: oxidation-reduction process	2.34E-02
115	GO:0009627: systemic acquired resistance	2.36E-02
116	GO:0042128: nitrate assimilation	2.36E-02
117	GO:0006950: response to stress	2.45E-02
118	GO:0009817: defense response to fungus, incompatible interaction	2.64E-02
119	GO:0030244: cellulose biosynthetic process	2.64E-02
120	GO:0010311: lateral root formation	2.73E-02
121	GO:0006508: proteolysis	2.73E-02
122	GO:0009832: plant-type cell wall biogenesis	2.73E-02
123	GO:0048767: root hair elongation	2.73E-02
124	GO:0006499: N-terminal protein myristoylation	2.83E-02
125	GO:0006457: protein folding	2.85E-02
126	GO:0048527: lateral root development	2.93E-02
127	GO:0007568: aging	2.93E-02
128	GO:0006865: amino acid transport	3.02E-02
129	GO:0009853: photorespiration	3.12E-02
130	GO:0010200: response to chitin	3.16E-02
131	GO:0006839: mitochondrial transport	3.43E-02
132	GO:0051707: response to other organism	3.74E-02
133	GO:0006886: intracellular protein transport	3.77E-02
134	GO:0009965: leaf morphogenesis	4.06E-02
135	GO:0032259: methylation	4.30E-02
136	GO:0042538: hyperosmotic salinity response	4.40E-02
137	GO:0009846: pollen germination	4.40E-02
138	GO:0009751: response to salicylic acid	4.43E-02
139	GO:0048364: root development	4.68E-02
140	GO:0042742: defense response to bacterium	4.93E-02
141	GO:0009909: regulation of flower development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0015930: glutamate synthase activity	0.00E+00
4	GO:0016504: peptidase activator activity	0.00E+00
5	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
6	GO:0004298: threonine-type endopeptidase activity	1.06E-06
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.21E-05
8	GO:0004364: glutathione transferase activity	4.97E-05
9	GO:0036402: proteasome-activating ATPase activity	5.43E-05
10	GO:0003756: protein disulfide isomerase activity	6.65E-05
11	GO:0102391: decanoate--CoA ligase activity	7.58E-05
12	GO:0004467: long-chain fatty acid-CoA ligase activity	1.01E-04
13	GO:0052747: sinapyl alcohol dehydrogenase activity	1.30E-04
14	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.71E-04
15	GO:0051669: fructan beta-fructosidase activity	1.71E-04
16	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	1.71E-04
17	GO:0008909: isochorismate synthase activity	1.71E-04
18	GO:0031219: levanase activity	1.71E-04
19	GO:0016041: glutamate synthase (ferredoxin) activity	1.71E-04
20	GO:0008233: peptidase activity	1.92E-04
21	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.73E-04
22	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.87E-04
23	GO:0048531: beta-1,3-galactosyltransferase activity	3.87E-04
24	GO:0015036: disulfide oxidoreductase activity	3.87E-04
25	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.87E-04
26	GO:0003994: aconitate hydratase activity	3.87E-04
27	GO:0004022: alcohol dehydrogenase (NAD) activity	4.24E-04
28	GO:0017025: TBP-class protein binding	5.37E-04
29	GO:0005524: ATP binding	6.04E-04
30	GO:0004557: alpha-galactosidase activity	6.32E-04
31	GO:0008964: phosphoenolpyruvate carboxylase activity	6.32E-04
32	GO:0003840: gamma-glutamyltransferase activity	6.32E-04
33	GO:0036374: glutathione hydrolase activity	6.32E-04
34	GO:0052692: raffinose alpha-galactosidase activity	6.32E-04
35	GO:0005093: Rab GDP-dissociation inhibitor activity	6.32E-04
36	GO:0008430: selenium binding	6.32E-04
37	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	9.04E-04
38	GO:0070628: proteasome binding	1.20E-03
39	GO:0004470: malic enzyme activity	1.20E-03
40	GO:0010279: indole-3-acetic acid amido synthetase activity	1.20E-03
41	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.20E-03
42	GO:0004737: pyruvate decarboxylase activity	1.20E-03
43	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.20E-03
44	GO:0010294: abscisic acid glucosyltransferase activity	1.52E-03
45	GO:0005459: UDP-galactose transmembrane transporter activity	1.52E-03
46	GO:0005452: inorganic anion exchanger activity	1.52E-03
47	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.52E-03
48	GO:0005496: steroid binding	1.52E-03
49	GO:0051538: 3 iron, 4 sulfur cluster binding	1.52E-03
50	GO:0004356: glutamate-ammonia ligase activity	1.52E-03
51	GO:0015301: anion:anion antiporter activity	1.52E-03
52	GO:0016462: pyrophosphatase activity	1.87E-03
53	GO:0030976: thiamine pyrophosphate binding	1.87E-03
54	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.87E-03
55	GO:0004747: ribokinase activity	2.24E-03
56	GO:0004656: procollagen-proline 4-dioxygenase activity	2.24E-03
57	GO:0016831: carboxy-lyase activity	2.64E-03
58	GO:0004427: inorganic diphosphatase activity	2.64E-03
59	GO:0003872: 6-phosphofructokinase activity	2.64E-03
60	GO:0008320: protein transmembrane transporter activity	2.64E-03
61	GO:0008865: fructokinase activity	3.06E-03
62	GO:0015238: drug transmembrane transporter activity	3.08E-03
63	GO:0005509: calcium ion binding	3.42E-03
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.71E-03
65	GO:0051539: 4 iron, 4 sulfur cluster binding	4.23E-03
66	GO:0045309: protein phosphorylated amino acid binding	4.44E-03
67	GO:0000287: magnesium ion binding	4.51E-03
68	GO:0008171: O-methyltransferase activity	4.93E-03
69	GO:0051537: 2 iron, 2 sulfur cluster binding	5.17E-03
70	GO:0019904: protein domain specific binding	5.45E-03
71	GO:0008559: xenobiotic-transporting ATPase activity	5.45E-03
72	GO:0051287: NAD binding	5.78E-03
73	GO:0008378: galactosyltransferase activity	5.98E-03
74	GO:0016491: oxidoreductase activity	6.37E-03
75	GO:0015114: phosphate ion transmembrane transporter activity	6.54E-03
76	GO:0005388: calcium-transporting ATPase activity	6.54E-03
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	8.37E-03
78	GO:0080043: quercetin 3-O-glucosyltransferase activity	8.37E-03
79	GO:0005507: copper ion binding	8.47E-03
80	GO:0051536: iron-sulfur cluster binding	8.92E-03
81	GO:0031418: L-ascorbic acid binding	8.92E-03
82	GO:0003954: NADH dehydrogenase activity	8.92E-03
83	GO:0043424: protein histidine kinase binding	9.56E-03
84	GO:0016758: transferase activity, transferring hexosyl groups	1.12E-02
85	GO:0050662: coenzyme binding	1.52E-02
86	GO:0015297: antiporter activity	1.52E-02
87	GO:0016853: isomerase activity	1.52E-02
88	GO:0005215: transporter activity	1.68E-02
89	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.68E-02
90	GO:0004197: cysteine-type endopeptidase activity	1.76E-02
91	GO:0008194: UDP-glycosyltransferase activity	1.78E-02
92	GO:0005200: structural constituent of cytoskeleton	2.01E-02
93	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.02E-02
94	GO:0051213: dioxygenase activity	2.18E-02
95	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.55E-02
96	GO:0005515: protein binding	2.64E-02
97	GO:0005096: GTPase activator activity	2.73E-02
98	GO:0050897: cobalt ion binding	2.93E-02
99	GO:0003697: single-stranded DNA binding	3.12E-02
100	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.22E-02
101	GO:0043621: protein self-association	3.96E-02
102	GO:0005198: structural molecule activity	4.06E-02
103	GO:0015293: symporter activity	4.06E-02
104	GO:0015171: amino acid transmembrane transporter activity	4.97E-02
105	GO:0008234: cysteine-type peptidase activity	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005829: cytosol	5.04E-10
3	GO:0000502: proteasome complex	7.08E-09
4	GO:0005839: proteasome core complex	1.57E-08
5	GO:0019773: proteasome core complex, alpha-subunit complex	2.85E-06
6	GO:0031597: cytosolic proteasome complex	7.58E-05
7	GO:0005783: endoplasmic reticulum	9.60E-05
8	GO:0031595: nuclear proteasome complex	1.01E-04
9	GO:0005774: vacuolar membrane	1.13E-04
10	GO:0005911: cell-cell junction	1.71E-04
11	GO:0008540: proteasome regulatory particle, base subcomplex	2.37E-04
12	GO:0009506: plasmodesma	3.30E-04
13	GO:0031314: extrinsic component of mitochondrial inner membrane	3.87E-04
14	GO:0030134: ER to Golgi transport vesicle	3.87E-04
15	GO:0046861: glyoxysomal membrane	6.32E-04
16	GO:0005794: Golgi apparatus	9.25E-04
17	GO:0005945: 6-phosphofructokinase complex	1.52E-03
18	GO:0008250: oligosaccharyltransferase complex	1.52E-03
19	GO:0016020: membrane	1.74E-03
20	GO:0005801: cis-Golgi network	2.24E-03
21	GO:0030173: integral component of Golgi membrane	2.24E-03
22	GO:0005788: endoplasmic reticulum lumen	2.39E-03
23	GO:0005886: plasma membrane	2.42E-03
24	GO:0009514: glyoxysome	3.50E-03
25	GO:0000326: protein storage vacuole	3.50E-03
26	GO:0005773: vacuole	3.65E-03
27	GO:0008541: proteasome regulatory particle, lid subcomplex	5.45E-03
28	GO:0005777: peroxisome	6.11E-03
29	GO:0005764: lysosome	7.11E-03
30	GO:0030176: integral component of endoplasmic reticulum membrane	7.69E-03
31	GO:0005758: mitochondrial intermembrane space	8.92E-03
32	GO:0005743: mitochondrial inner membrane	9.08E-03
33	GO:0045271: respiratory chain complex I	9.56E-03
34	GO:0005741: mitochondrial outer membrane	1.02E-02
35	GO:0048046: apoplast	1.31E-02
36	GO:0005737: cytoplasm	1.51E-02
37	GO:0005618: cell wall	1.54E-02
38	GO:0022626: cytosolic ribosome	1.95E-02
39	GO:0005778: peroxisomal membrane	2.01E-02
40	GO:0009505: plant-type cell wall	2.02E-02
41	GO:0016021: integral component of membrane	2.34E-02
42	GO:0005789: endoplasmic reticulum membrane	2.71E-02
43	GO:0000325: plant-type vacuole	2.93E-02
44	GO:0005819: spindle	3.33E-02
45	GO:0005856: cytoskeleton	4.06E-02
46	GO:0031966: mitochondrial membrane	4.40E-02
47	GO:0005635: nuclear envelope	4.85E-02
48	GO:0009507: chloroplast	4.88E-02
49	GO:0043231: intracellular membrane-bounded organelle	4.94E-02