GO Enrichment Analysis of Co-expressed Genes with
AT5G55630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 2 | GO:0006223: uracil salvage | 0.00E+00 |
| 3 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 4 | GO:1905499: trichome papilla formation | 0.00E+00 |
| 5 | GO:0006437: tyrosyl-tRNA aminoacylation | 0.00E+00 |
| 6 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 7 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 8 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 9 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 10 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 11 | GO:0032544: plastid translation | 9.71E-07 |
| 12 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.90E-06 |
| 13 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.55E-06 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 4.60E-06 |
| 15 | GO:0010027: thylakoid membrane organization | 9.24E-05 |
| 16 | GO:0006783: heme biosynthetic process | 1.03E-04 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.10E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 1.10E-04 |
| 19 | GO:0043686: co-translational protein modification | 1.10E-04 |
| 20 | GO:1902458: positive regulation of stomatal opening | 1.10E-04 |
| 21 | GO:0019354: siroheme biosynthetic process | 1.10E-04 |
| 22 | GO:0045037: protein import into chloroplast stroma | 2.01E-04 |
| 23 | GO:0070981: L-asparagine biosynthetic process | 2.57E-04 |
| 24 | GO:0006529: asparagine biosynthetic process | 2.57E-04 |
| 25 | GO:0008616: queuosine biosynthetic process | 2.57E-04 |
| 26 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.57E-04 |
| 27 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 2.57E-04 |
| 28 | GO:0006568: tryptophan metabolic process | 2.57E-04 |
| 29 | GO:0043039: tRNA aminoacylation | 2.57E-04 |
| 30 | GO:0010207: photosystem II assembly | 2.61E-04 |
| 31 | GO:0009658: chloroplast organization | 3.25E-04 |
| 32 | GO:0090391: granum assembly | 4.25E-04 |
| 33 | GO:0006760: folic acid-containing compound metabolic process | 4.25E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 6.10E-04 |
| 35 | GO:0006241: CTP biosynthetic process | 6.10E-04 |
| 36 | GO:0006165: nucleoside diphosphate phosphorylation | 6.10E-04 |
| 37 | GO:0044206: UMP salvage | 8.10E-04 |
| 38 | GO:0046656: folic acid biosynthetic process | 8.10E-04 |
| 39 | GO:0006183: GTP biosynthetic process | 8.10E-04 |
| 40 | GO:0032502: developmental process | 9.34E-04 |
| 41 | GO:0043097: pyrimidine nucleoside salvage | 1.02E-03 |
| 42 | GO:0010236: plastoquinone biosynthetic process | 1.02E-03 |
| 43 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.02E-03 |
| 44 | GO:0031365: N-terminal protein amino acid modification | 1.02E-03 |
| 45 | GO:0006665: sphingolipid metabolic process | 1.02E-03 |
| 46 | GO:0006206: pyrimidine nucleobase metabolic process | 1.25E-03 |
| 47 | GO:0010190: cytochrome b6f complex assembly | 1.25E-03 |
| 48 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.25E-03 |
| 49 | GO:0009117: nucleotide metabolic process | 1.25E-03 |
| 50 | GO:0042372: phylloquinone biosynthetic process | 1.49E-03 |
| 51 | GO:0017148: negative regulation of translation | 1.49E-03 |
| 52 | GO:0046654: tetrahydrofolate biosynthetic process | 1.49E-03 |
| 53 | GO:0009735: response to cytokinin | 1.70E-03 |
| 54 | GO:0009772: photosynthetic electron transport in photosystem II | 1.75E-03 |
| 55 | GO:0010196: nonphotochemical quenching | 1.75E-03 |
| 56 | GO:0042255: ribosome assembly | 2.03E-03 |
| 57 | GO:0006353: DNA-templated transcription, termination | 2.03E-03 |
| 58 | GO:0006875: cellular metal ion homeostasis | 2.03E-03 |
| 59 | GO:2000070: regulation of response to water deprivation | 2.03E-03 |
| 60 | GO:0017004: cytochrome complex assembly | 2.32E-03 |
| 61 | GO:0015996: chlorophyll catabolic process | 2.32E-03 |
| 62 | GO:0007186: G-protein coupled receptor signaling pathway | 2.32E-03 |
| 63 | GO:0042761: very long-chain fatty acid biosynthetic process | 2.93E-03 |
| 64 | GO:0006415: translational termination | 3.59E-03 |
| 65 | GO:0043085: positive regulation of catalytic activity | 3.59E-03 |
| 66 | GO:0006541: glutamine metabolic process | 4.66E-03 |
| 67 | GO:0010167: response to nitrate | 5.04E-03 |
| 68 | GO:0010025: wax biosynthetic process | 5.44E-03 |
| 69 | GO:0009116: nucleoside metabolic process | 5.84E-03 |
| 70 | GO:0000027: ribosomal large subunit assembly | 5.84E-03 |
| 71 | GO:0007017: microtubule-based process | 6.25E-03 |
| 72 | GO:0006418: tRNA aminoacylation for protein translation | 6.25E-03 |
| 73 | GO:0061077: chaperone-mediated protein folding | 6.67E-03 |
| 74 | GO:0009411: response to UV | 7.55E-03 |
| 75 | GO:0006412: translation | 7.88E-03 |
| 76 | GO:0010091: trichome branching | 8.00E-03 |
| 77 | GO:0042335: cuticle development | 8.93E-03 |
| 78 | GO:0006662: glycerol ether metabolic process | 9.41E-03 |
| 79 | GO:0010182: sugar mediated signaling pathway | 9.41E-03 |
| 80 | GO:0009741: response to brassinosteroid | 9.41E-03 |
| 81 | GO:0009646: response to absence of light | 9.91E-03 |
| 82 | GO:0071554: cell wall organization or biogenesis | 1.09E-02 |
| 83 | GO:0042128: nitrate assimilation | 1.53E-02 |
| 84 | GO:0010411: xyloglucan metabolic process | 1.59E-02 |
| 85 | GO:0009817: defense response to fungus, incompatible interaction | 1.71E-02 |
| 86 | GO:0015979: photosynthesis | 1.89E-02 |
| 87 | GO:0045454: cell redox homeostasis | 1.98E-02 |
| 88 | GO:0034599: cellular response to oxidative stress | 2.09E-02 |
| 89 | GO:0030001: metal ion transport | 2.22E-02 |
| 90 | GO:0032259: methylation | 2.34E-02 |
| 91 | GO:0042542: response to hydrogen peroxide | 2.35E-02 |
| 92 | GO:0042546: cell wall biogenesis | 2.49E-02 |
| 93 | GO:0042538: hyperosmotic salinity response | 2.85E-02 |
| 94 | GO:0009585: red, far-red light phototransduction | 2.99E-02 |
| 95 | GO:0006096: glycolytic process | 3.37E-02 |
| 96 | GO:0051726: regulation of cell cycle | 4.01E-02 |
| 97 | GO:0009742: brassinosteroid mediated signaling pathway | 4.01E-02 |
| 98 | GO:0055114: oxidation-reduction process | 4.69E-02 |
| 99 | GO:0042744: hydrogen peroxide catabolic process | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity | 0.00E+00 |
| 2 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 3 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 4 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 5 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 6 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 7 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 8 | GO:0004851: uroporphyrin-III C-methyltransferase activity | 0.00E+00 |
| 9 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 10 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.10E-04 |
| 11 | GO:0042586: peptide deformylase activity | 1.10E-04 |
| 12 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.10E-04 |
| 13 | GO:0015088: copper uptake transmembrane transporter activity | 1.10E-04 |
| 14 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.10E-04 |
| 15 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.10E-04 |
| 16 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.10E-04 |
| 17 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.10E-04 |
| 18 | GO:0004831: tyrosine-tRNA ligase activity | 1.10E-04 |
| 19 | GO:0004071: aspartate-ammonia ligase activity | 1.10E-04 |
| 20 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 2.57E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 2.57E-04 |
| 22 | GO:0004150: dihydroneopterin aldolase activity | 2.57E-04 |
| 23 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.57E-04 |
| 24 | GO:0008479: queuine tRNA-ribosyltransferase activity | 2.57E-04 |
| 25 | GO:0070402: NADPH binding | 4.25E-04 |
| 26 | GO:0035529: NADH pyrophosphatase activity | 6.10E-04 |
| 27 | GO:0016149: translation release factor activity, codon specific | 6.10E-04 |
| 28 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 6.10E-04 |
| 29 | GO:0004550: nucleoside diphosphate kinase activity | 6.10E-04 |
| 30 | GO:0043023: ribosomal large subunit binding | 6.10E-04 |
| 31 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.10E-04 |
| 32 | GO:0004659: prenyltransferase activity | 8.10E-04 |
| 33 | GO:0004845: uracil phosphoribosyltransferase activity | 8.10E-04 |
| 34 | GO:0052793: pectin acetylesterase activity | 8.10E-04 |
| 35 | GO:0004040: amidase activity | 1.02E-03 |
| 36 | GO:0030414: peptidase inhibitor activity | 1.02E-03 |
| 37 | GO:0009922: fatty acid elongase activity | 1.02E-03 |
| 38 | GO:0016462: pyrophosphatase activity | 1.25E-03 |
| 39 | GO:0004849: uridine kinase activity | 1.49E-03 |
| 40 | GO:0004033: aldo-keto reductase (NADP) activity | 2.03E-03 |
| 41 | GO:0003747: translation release factor activity | 2.62E-03 |
| 42 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.62E-03 |
| 43 | GO:0005381: iron ion transmembrane transporter activity | 2.93E-03 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.04E-03 |
| 45 | GO:0008047: enzyme activator activity | 3.25E-03 |
| 46 | GO:0004864: protein phosphatase inhibitor activity | 3.25E-03 |
| 47 | GO:0031072: heat shock protein binding | 4.30E-03 |
| 48 | GO:0005528: FK506 binding | 5.84E-03 |
| 49 | GO:0019843: rRNA binding | 6.23E-03 |
| 50 | GO:0004176: ATP-dependent peptidase activity | 6.67E-03 |
| 51 | GO:0003727: single-stranded RNA binding | 8.00E-03 |
| 52 | GO:0047134: protein-disulfide reductase activity | 8.46E-03 |
| 53 | GO:0004812: aminoacyl-tRNA ligase activity | 8.46E-03 |
| 54 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 9.41E-03 |
| 55 | GO:0004791: thioredoxin-disulfide reductase activity | 9.91E-03 |
| 56 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.09E-02 |
| 57 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.20E-02 |
| 58 | GO:0008168: methyltransferase activity | 1.28E-02 |
| 59 | GO:0008237: metallopeptidase activity | 1.30E-02 |
| 60 | GO:0005200: structural constituent of cytoskeleton | 1.30E-02 |
| 61 | GO:0008483: transaminase activity | 1.30E-02 |
| 62 | GO:0016413: O-acetyltransferase activity | 1.36E-02 |
| 63 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.59E-02 |
| 64 | GO:0003735: structural constituent of ribosome | 1.61E-02 |
| 65 | GO:0005096: GTPase activator activity | 1.77E-02 |
| 66 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.83E-02 |
| 67 | GO:0042803: protein homodimerization activity | 2.08E-02 |
| 68 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.22E-02 |
| 69 | GO:0003690: double-stranded DNA binding | 3.07E-02 |
| 70 | GO:0022857: transmembrane transporter activity | 3.69E-02 |
| 71 | GO:0051082: unfolded protein binding | 3.85E-02 |
| 72 | GO:0015035: protein disulfide oxidoreductase activity | 3.93E-02 |
| 73 | GO:0016758: transferase activity, transferring hexosyl groups | 4.43E-02 |
| 74 | GO:0030170: pyridoxal phosphate binding | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.42E-34 |
| 2 | GO:0009570: chloroplast stroma | 3.95E-26 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 2.60E-14 |
| 4 | GO:0009941: chloroplast envelope | 6.73E-13 |
| 5 | GO:0009579: thylakoid | 8.18E-12 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.46E-09 |
| 7 | GO:0009534: chloroplast thylakoid | 1.05E-05 |
| 8 | GO:0031977: thylakoid lumen | 1.37E-05 |
| 9 | GO:0009515: granal stacked thylakoid | 1.10E-04 |
| 10 | GO:0009923: fatty acid elongase complex | 1.10E-04 |
| 11 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.10E-04 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.03E-04 |
| 13 | GO:0009528: plastid inner membrane | 4.25E-04 |
| 14 | GO:0009536: plastid | 4.55E-04 |
| 15 | GO:0031897: Tic complex | 8.10E-04 |
| 16 | GO:0009527: plastid outer membrane | 8.10E-04 |
| 17 | GO:0019898: extrinsic component of membrane | 8.23E-04 |
| 18 | GO:0045298: tubulin complex | 2.62E-03 |
| 19 | GO:0009508: plastid chromosome | 4.30E-03 |
| 20 | GO:0009706: chloroplast inner membrane | 4.98E-03 |
| 21 | GO:0005840: ribosome | 6.11E-03 |
| 22 | GO:0009532: plastid stroma | 6.67E-03 |
| 23 | GO:0016592: mediator complex | 1.14E-02 |
| 24 | GO:0010319: stromule | 1.30E-02 |
| 25 | GO:0009295: nucleoid | 1.30E-02 |
| 26 | GO:0031969: chloroplast membrane | 1.66E-02 |
| 27 | GO:0009707: chloroplast outer membrane | 1.71E-02 |
| 28 | GO:0015934: large ribosomal subunit | 1.89E-02 |
| 29 | GO:0022626: cytosolic ribosome | 4.14E-02 |
| 30 | GO:0005618: cell wall | 4.42E-02 |