GO Enrichment Analysis of Co-expressed Genes with
AT5G55620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 2 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 3 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 4 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 6 | GO:0009658: chloroplast organization | 1.70E-04 |
| 7 | GO:0046467: membrane lipid biosynthetic process | 1.88E-04 |
| 8 | GO:0043266: regulation of potassium ion transport | 1.88E-04 |
| 9 | GO:0010480: microsporocyte differentiation | 1.88E-04 |
| 10 | GO:0031338: regulation of vesicle fusion | 1.88E-04 |
| 11 | GO:0071461: cellular response to redox state | 1.88E-04 |
| 12 | GO:2000021: regulation of ion homeostasis | 1.88E-04 |
| 13 | GO:0071482: cellular response to light stimulus | 1.88E-04 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 3.29E-04 |
| 15 | GO:0010411: xyloglucan metabolic process | 3.29E-04 |
| 16 | GO:0080005: photosystem stoichiometry adjustment | 4.24E-04 |
| 17 | GO:0045717: negative regulation of fatty acid biosynthetic process | 4.24E-04 |
| 18 | GO:0018026: peptidyl-lysine monomethylation | 4.24E-04 |
| 19 | GO:0080009: mRNA methylation | 4.24E-04 |
| 20 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.24E-04 |
| 21 | GO:0010020: chloroplast fission | 5.47E-04 |
| 22 | GO:0006518: peptide metabolic process | 6.92E-04 |
| 23 | GO:0090630: activation of GTPase activity | 6.92E-04 |
| 24 | GO:2001295: malonyl-CoA biosynthetic process | 6.92E-04 |
| 25 | GO:0042546: cell wall biogenesis | 7.39E-04 |
| 26 | GO:0016998: cell wall macromolecule catabolic process | 9.07E-04 |
| 27 | GO:0016556: mRNA modification | 9.86E-04 |
| 28 | GO:0043572: plastid fission | 9.86E-04 |
| 29 | GO:2001141: regulation of RNA biosynthetic process | 9.86E-04 |
| 30 | GO:0010371: regulation of gibberellin biosynthetic process | 9.86E-04 |
| 31 | GO:0009152: purine ribonucleotide biosynthetic process | 9.86E-04 |
| 32 | GO:0046653: tetrahydrofolate metabolic process | 9.86E-04 |
| 33 | GO:0044211: CTP salvage | 9.86E-04 |
| 34 | GO:0016117: carotenoid biosynthetic process | 1.26E-03 |
| 35 | GO:0006552: leucine catabolic process | 1.31E-03 |
| 36 | GO:0044206: UMP salvage | 1.31E-03 |
| 37 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1.31E-03 |
| 38 | GO:0009765: photosynthesis, light harvesting | 1.31E-03 |
| 39 | GO:0000413: protein peptidyl-prolyl isomerization | 1.36E-03 |
| 40 | GO:0071555: cell wall organization | 1.36E-03 |
| 41 | GO:0016120: carotene biosynthetic process | 1.66E-03 |
| 42 | GO:0043097: pyrimidine nucleoside salvage | 1.66E-03 |
| 43 | GO:0045487: gibberellin catabolic process | 1.66E-03 |
| 44 | GO:0032543: mitochondrial translation | 1.66E-03 |
| 45 | GO:0016123: xanthophyll biosynthetic process | 1.66E-03 |
| 46 | GO:0015979: photosynthesis | 1.73E-03 |
| 47 | GO:0016554: cytidine to uridine editing | 2.05E-03 |
| 48 | GO:0006206: pyrimidine nucleobase metabolic process | 2.05E-03 |
| 49 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 2.05E-03 |
| 50 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.05E-03 |
| 51 | GO:0006574: valine catabolic process | 2.05E-03 |
| 52 | GO:0010405: arabinogalactan protein metabolic process | 2.05E-03 |
| 53 | GO:0009082: branched-chain amino acid biosynthetic process | 2.46E-03 |
| 54 | GO:0010027: thylakoid membrane organization | 2.58E-03 |
| 55 | GO:0006633: fatty acid biosynthetic process | 2.80E-03 |
| 56 | GO:0048437: floral organ development | 2.90E-03 |
| 57 | GO:0009395: phospholipid catabolic process | 2.90E-03 |
| 58 | GO:0009704: de-etiolation | 3.36E-03 |
| 59 | GO:0048564: photosystem I assembly | 3.36E-03 |
| 60 | GO:0009657: plastid organization | 3.84E-03 |
| 61 | GO:0032544: plastid translation | 3.84E-03 |
| 62 | GO:0017004: cytochrome complex assembly | 3.84E-03 |
| 63 | GO:0010206: photosystem II repair | 4.35E-03 |
| 64 | GO:0006754: ATP biosynthetic process | 4.35E-03 |
| 65 | GO:0048589: developmental growth | 4.35E-03 |
| 66 | GO:1900865: chloroplast RNA modification | 4.87E-03 |
| 67 | GO:0010205: photoinhibition | 4.87E-03 |
| 68 | GO:0006415: translational termination | 5.99E-03 |
| 69 | GO:0006352: DNA-templated transcription, initiation | 5.99E-03 |
| 70 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.99E-03 |
| 71 | GO:0048229: gametophyte development | 5.99E-03 |
| 72 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.58E-03 |
| 73 | GO:0006820: anion transport | 6.58E-03 |
| 74 | GO:0010075: regulation of meristem growth | 7.19E-03 |
| 75 | GO:0010207: photosystem II assembly | 7.82E-03 |
| 76 | GO:0009934: regulation of meristem structural organization | 7.82E-03 |
| 77 | GO:0048768: root hair cell tip growth | 7.82E-03 |
| 78 | GO:0010167: response to nitrate | 8.47E-03 |
| 79 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.14E-03 |
| 80 | GO:0007010: cytoskeleton organization | 9.83E-03 |
| 81 | GO:0005975: carbohydrate metabolic process | 1.04E-02 |
| 82 | GO:0006418: tRNA aminoacylation for protein translation | 1.05E-02 |
| 83 | GO:0035428: hexose transmembrane transport | 1.20E-02 |
| 84 | GO:0016226: iron-sulfur cluster assembly | 1.20E-02 |
| 85 | GO:0009306: protein secretion | 1.35E-02 |
| 86 | GO:0009058: biosynthetic process | 1.39E-02 |
| 87 | GO:0048653: anther development | 1.51E-02 |
| 88 | GO:0046323: glucose import | 1.60E-02 |
| 89 | GO:0071554: cell wall organization or biogenesis | 1.85E-02 |
| 90 | GO:0007264: small GTPase mediated signal transduction | 1.94E-02 |
| 91 | GO:0016125: sterol metabolic process | 2.13E-02 |
| 92 | GO:0016126: sterol biosynthetic process | 2.41E-02 |
| 93 | GO:0009627: systemic acquired resistance | 2.61E-02 |
| 94 | GO:0042128: nitrate assimilation | 2.61E-02 |
| 95 | GO:0009817: defense response to fungus, incompatible interaction | 2.91E-02 |
| 96 | GO:0018298: protein-chromophore linkage | 2.91E-02 |
| 97 | GO:0048767: root hair elongation | 3.02E-02 |
| 98 | GO:0007568: aging | 3.23E-02 |
| 99 | GO:0006508: proteolysis | 3.43E-02 |
| 100 | GO:0009853: photorespiration | 3.45E-02 |
| 101 | GO:0034599: cellular response to oxidative stress | 3.56E-02 |
| 102 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.62E-02 |
| 103 | GO:0006839: mitochondrial transport | 3.78E-02 |
| 104 | GO:0006812: cation transport | 4.85E-02 |
| 105 | GO:0042538: hyperosmotic salinity response | 4.85E-02 |
| 106 | GO:0016042: lipid catabolic process | 5.00E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004496: mevalonate kinase activity | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 4 | GO:0048307: ferredoxin-nitrite reductase activity | 0.00E+00 |
| 5 | GO:0050421: nitrite reductase (NO-forming) activity | 0.00E+00 |
| 6 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 7 | GO:0047889: ferredoxin-nitrate reductase activity | 0.00E+00 |
| 8 | GO:0016851: magnesium chelatase activity | 4.31E-08 |
| 9 | GO:0052793: pectin acetylesterase activity | 2.66E-05 |
| 10 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.58E-04 |
| 11 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.88E-04 |
| 12 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 1.88E-04 |
| 13 | GO:0045485: omega-6 fatty acid desaturase activity | 1.88E-04 |
| 14 | GO:0004856: xylulokinase activity | 1.88E-04 |
| 15 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.88E-04 |
| 16 | GO:0004328: formamidase activity | 1.88E-04 |
| 17 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.88E-04 |
| 18 | GO:0005227: calcium activated cation channel activity | 1.88E-04 |
| 19 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.29E-04 |
| 20 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.24E-04 |
| 21 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 4.24E-04 |
| 22 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.24E-04 |
| 23 | GO:0004222: metalloendopeptidase activity | 4.27E-04 |
| 24 | GO:0003913: DNA photolyase activity | 6.92E-04 |
| 25 | GO:0002161: aminoacyl-tRNA editing activity | 6.92E-04 |
| 26 | GO:0004075: biotin carboxylase activity | 6.92E-04 |
| 27 | GO:0030267: glyoxylate reductase (NADP) activity | 6.92E-04 |
| 28 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 6.92E-04 |
| 29 | GO:0008864: formyltetrahydrofolate deformylase activity | 6.92E-04 |
| 30 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 6.92E-04 |
| 31 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 6.92E-04 |
| 32 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.53E-04 |
| 33 | GO:0016149: translation release factor activity, codon specific | 9.86E-04 |
| 34 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 9.86E-04 |
| 35 | GO:0052656: L-isoleucine transaminase activity | 9.86E-04 |
| 36 | GO:0043023: ribosomal large subunit binding | 9.86E-04 |
| 37 | GO:0052654: L-leucine transaminase activity | 9.86E-04 |
| 38 | GO:0052655: L-valine transaminase activity | 9.86E-04 |
| 39 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 9.86E-04 |
| 40 | GO:0016788: hydrolase activity, acting on ester bonds | 1.05E-03 |
| 41 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.31E-03 |
| 42 | GO:0016279: protein-lysine N-methyltransferase activity | 1.31E-03 |
| 43 | GO:0001053: plastid sigma factor activity | 1.31E-03 |
| 44 | GO:0004845: uracil phosphoribosyltransferase activity | 1.31E-03 |
| 45 | GO:0016836: hydro-lyase activity | 1.31E-03 |
| 46 | GO:0016987: sigma factor activity | 1.31E-03 |
| 47 | GO:0052689: carboxylic ester hydrolase activity | 1.65E-03 |
| 48 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.66E-03 |
| 49 | GO:0017137: Rab GTPase binding | 1.66E-03 |
| 50 | GO:0003989: acetyl-CoA carboxylase activity | 1.66E-03 |
| 51 | GO:0008381: mechanically-gated ion channel activity | 1.66E-03 |
| 52 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 2.05E-03 |
| 53 | GO:0042578: phosphoric ester hydrolase activity | 2.05E-03 |
| 54 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 2.05E-03 |
| 55 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.17E-03 |
| 56 | GO:0008237: metallopeptidase activity | 2.30E-03 |
| 57 | GO:0004849: uridine kinase activity | 2.46E-03 |
| 58 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.46E-03 |
| 59 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.46E-03 |
| 60 | GO:0051920: peroxiredoxin activity | 2.46E-03 |
| 61 | GO:0009881: photoreceptor activity | 2.90E-03 |
| 62 | GO:0008236: serine-type peptidase activity | 3.20E-03 |
| 63 | GO:0004033: aldo-keto reductase (NADP) activity | 3.36E-03 |
| 64 | GO:0016209: antioxidant activity | 3.36E-03 |
| 65 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 4.35E-03 |
| 66 | GO:0003747: translation release factor activity | 4.35E-03 |
| 67 | GO:0047617: acyl-CoA hydrolase activity | 4.87E-03 |
| 68 | GO:0047372: acylglycerol lipase activity | 5.99E-03 |
| 69 | GO:0004565: beta-galactosidase activity | 7.19E-03 |
| 70 | GO:0009982: pseudouridine synthase activity | 7.19E-03 |
| 71 | GO:0051536: iron-sulfur cluster binding | 9.83E-03 |
| 72 | GO:0005528: FK506 binding | 9.83E-03 |
| 73 | GO:0043424: protein histidine kinase binding | 1.05E-02 |
| 74 | GO:0004176: ATP-dependent peptidase activity | 1.13E-02 |
| 75 | GO:0033612: receptor serine/threonine kinase binding | 1.13E-02 |
| 76 | GO:0004812: aminoacyl-tRNA ligase activity | 1.43E-02 |
| 77 | GO:0008080: N-acetyltransferase activity | 1.60E-02 |
| 78 | GO:0005355: glucose transmembrane transporter activity | 1.68E-02 |
| 79 | GO:0019901: protein kinase binding | 1.77E-02 |
| 80 | GO:0016887: ATPase activity | 2.07E-02 |
| 81 | GO:0016759: cellulose synthase activity | 2.13E-02 |
| 82 | GO:0005200: structural constituent of cytoskeleton | 2.22E-02 |
| 83 | GO:0016413: O-acetyltransferase activity | 2.31E-02 |
| 84 | GO:0004721: phosphoprotein phosphatase activity | 2.71E-02 |
| 85 | GO:0005524: ATP binding | 2.88E-02 |
| 86 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.91E-02 |
| 87 | GO:0005096: GTPase activator activity | 3.02E-02 |
| 88 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.46E-02 |
| 89 | GO:0004497: monooxygenase activity | 3.50E-02 |
| 90 | GO:0003993: acid phosphatase activity | 3.56E-02 |
| 91 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.78E-02 |
| 92 | GO:0043621: protein self-association | 4.36E-02 |
| 93 | GO:0004871: signal transducer activity | 4.38E-02 |
| 94 | GO:0005198: structural molecule activity | 4.48E-02 |
| 95 | GO:0005525: GTP binding | 4.53E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.07E-23 |
| 2 | GO:0009570: chloroplast stroma | 9.96E-17 |
| 3 | GO:0009534: chloroplast thylakoid | 4.63E-11 |
| 4 | GO:0009941: chloroplast envelope | 3.90E-10 |
| 5 | GO:0031977: thylakoid lumen | 2.82E-09 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.70E-09 |
| 7 | GO:0010007: magnesium chelatase complex | 8.84E-09 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 1.39E-08 |
| 9 | GO:0009579: thylakoid | 1.43E-06 |
| 10 | GO:0009706: chloroplast inner membrane | 1.94E-05 |
| 11 | GO:0031969: chloroplast membrane | 1.41E-03 |
| 12 | GO:0009536: plastid | 2.04E-03 |
| 13 | GO:0009533: chloroplast stromal thylakoid | 2.90E-03 |
| 14 | GO:0000311: plastid large ribosomal subunit | 6.58E-03 |
| 15 | GO:0030095: chloroplast photosystem II | 7.82E-03 |
| 16 | GO:0042651: thylakoid membrane | 1.05E-02 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 1.05E-02 |
| 18 | GO:0009532: plastid stroma | 1.13E-02 |
| 19 | GO:0010287: plastoglobule | 1.25E-02 |
| 20 | GO:0048046: apoplast | 1.70E-02 |
| 21 | GO:0019898: extrinsic component of membrane | 1.77E-02 |
| 22 | GO:0005618: cell wall | 2.01E-02 |
| 23 | GO:0009505: plant-type cell wall | 2.48E-02 |
| 24 | GO:0005874: microtubule | 3.38E-02 |
| 25 | GO:0005819: spindle | 3.67E-02 |
| 26 | GO:0005856: cytoskeleton | 4.48E-02 |