Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031990: mRNA export from nucleus in response to heat stress0.00E+00
2GO:0032780: negative regulation of ATPase activity0.00E+00
3GO:0006482: protein demethylation0.00E+00
4GO:0046292: formaldehyde metabolic process0.00E+00
5GO:0006069: ethanol oxidation0.00E+00
6GO:0048455: stamen formation2.88E-05
7GO:0080173: male-female gamete recognition during double fertilization2.88E-05
8GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex2.88E-05
9GO:1901183: positive regulation of camalexin biosynthetic process2.88E-05
10GO:0006597: spermine biosynthetic process7.28E-05
11GO:0019521: D-gluconate metabolic process7.28E-05
12GO:0019374: galactolipid metabolic process7.28E-05
13GO:0051788: response to misfolded protein7.28E-05
14GO:0045948: positive regulation of translational initiation7.28E-05
15GO:0007051: spindle organization7.28E-05
16GO:0010476: gibberellin mediated signaling pathway1.27E-04
17GO:0010325: raffinose family oligosaccharide biosynthetic process1.27E-04
18GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay1.27E-04
19GO:1900055: regulation of leaf senescence1.27E-04
20GO:0006624: vacuolar protein processing1.89E-04
21GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.57E-04
22GO:0048767: root hair elongation3.15E-04
23GO:0006405: RNA export from nucleus3.30E-04
24GO:0043248: proteasome assembly4.06E-04
25GO:0000060: protein import into nucleus, translocation4.06E-04
26GO:0006796: phosphate-containing compound metabolic process4.06E-04
27GO:0006596: polyamine biosynthetic process4.06E-04
28GO:0048444: floral organ morphogenesis4.86E-04
29GO:0009082: branched-chain amino acid biosynthetic process4.86E-04
30GO:0009099: valine biosynthetic process4.86E-04
31GO:0048528: post-embryonic root development5.68E-04
32GO:0071669: plant-type cell wall organization or biogenesis5.68E-04
33GO:0000082: G1/S transition of mitotic cell cycle5.68E-04
34GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.68E-04
35GO:0006644: phospholipid metabolic process6.55E-04
36GO:0015996: chlorophyll catabolic process7.44E-04
37GO:0006367: transcription initiation from RNA polymerase II promoter7.44E-04
38GO:0010120: camalexin biosynthetic process7.44E-04
39GO:0009097: isoleucine biosynthetic process7.44E-04
40GO:0009056: catabolic process8.35E-04
41GO:0006098: pentose-phosphate shunt8.35E-04
42GO:0000373: Group II intron splicing8.35E-04
43GO:0009098: leucine biosynthetic process9.29E-04
44GO:0010150: leaf senescence1.53E-03
45GO:0010053: root epidermal cell differentiation1.56E-03
46GO:2000377: regulation of reactive oxygen species metabolic process1.79E-03
47GO:0007010: cytoskeleton organization1.79E-03
48GO:0006366: transcription from RNA polymerase II promoter2.04E-03
49GO:0006012: galactose metabolic process2.30E-03
50GO:0051028: mRNA transport2.57E-03
51GO:0034220: ion transmembrane transport2.70E-03
52GO:0009733: response to auxin2.88E-03
53GO:1901657: glycosyl compound metabolic process3.58E-03
54GO:0030163: protein catabolic process3.58E-03
55GO:0010252: auxin homeostasis3.73E-03
56GO:0010286: heat acclimation3.89E-03
57GO:0006810: transport4.04E-03
58GO:0016042: lipid catabolic process4.13E-03
59GO:0010029: regulation of seed germination4.37E-03
60GO:0006974: cellular response to DNA damage stimulus4.54E-03
61GO:0008219: cell death5.05E-03
62GO:0010043: response to zinc ion5.58E-03
63GO:0009853: photorespiration5.94E-03
64GO:0006839: mitochondrial transport6.50E-03
65GO:0042542: response to hydrogen peroxide6.89E-03
66GO:0009744: response to sucrose7.08E-03
67GO:0051707: response to other organism7.08E-03
68GO:0009611: response to wounding7.67E-03
69GO:0009809: lignin biosynthetic process8.71E-03
70GO:0051603: proteolysis involved in cellular protein catabolic process8.92E-03
71GO:0048316: seed development1.00E-02
72GO:0006511: ubiquitin-dependent protein catabolic process1.02E-02
73GO:0006508: proteolysis1.03E-02
74GO:0018105: peptidyl-serine phosphorylation1.14E-02
75GO:0009651: response to salt stress1.15E-02
76GO:0009845: seed germination1.38E-02
77GO:0040008: regulation of growth1.59E-02
78GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.78E-02
79GO:0009739: response to gibberellin1.78E-02
80GO:0010468: regulation of gene expression1.86E-02
81GO:0009658: chloroplast organization2.24E-02
82GO:0048366: leaf development2.52E-02
83GO:0046777: protein autophosphorylation2.74E-02
84GO:0015979: photosynthesis2.87E-02
85GO:0009737: response to abscisic acid3.25E-02
86GO:0006629: lipid metabolic process3.45E-02
87GO:0009408: response to heat3.45E-02
88GO:0048364: root development3.55E-02
89GO:0009735: response to cytokinin4.86E-02
RankGO TermAdjusted P value
1GO:0042030: ATPase inhibitor activity0.00E+00
2GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
3GO:0004622: lysophospholipase activity0.00E+00
4GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
5GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
6GO:0051723: protein methylesterase activity0.00E+00
7GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.88E-05
8GO:0019707: protein-cysteine S-acyltransferase activity2.88E-05
9GO:0016768: spermine synthase activity2.88E-05
10GO:0010331: gibberellin binding7.28E-05
11GO:0004766: spermidine synthase activity7.28E-05
12GO:1990585: hydroxyproline O-arabinosyltransferase activity7.28E-05
13GO:0052654: L-leucine transaminase activity1.89E-04
14GO:0052655: L-valine transaminase activity1.89E-04
15GO:0001653: peptide receptor activity1.89E-04
16GO:0052656: L-isoleucine transaminase activity1.89E-04
17GO:0004084: branched-chain-amino-acid transaminase activity2.57E-04
18GO:0010279: indole-3-acetic acid amido synthetase activity2.57E-04
19GO:0031369: translation initiation factor binding4.06E-04
20GO:0031593: polyubiquitin binding4.06E-04
21GO:0016462: pyrophosphatase activity4.06E-04
22GO:0003978: UDP-glucose 4-epimerase activity4.86E-04
23GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.86E-04
24GO:0004427: inorganic diphosphatase activity5.68E-04
25GO:0008121: ubiquinol-cytochrome-c reductase activity5.68E-04
26GO:0004620: phospholipase activity5.68E-04
27GO:0047617: acyl-CoA hydrolase activity9.29E-04
28GO:0016787: hydrolase activity1.23E-03
29GO:0015114: phosphate ion transmembrane transporter activity1.34E-03
30GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.34E-03
31GO:0004022: alcohol dehydrogenase (NAD) activity1.34E-03
32GO:0019706: protein-cysteine S-palmitoyltransferase activity2.04E-03
33GO:0000287: magnesium ion binding2.30E-03
34GO:0003727: single-stranded RNA binding2.43E-03
35GO:0008536: Ran GTPase binding2.84E-03
36GO:0004197: cysteine-type endopeptidase activity3.43E-03
37GO:0005200: structural constituent of cytoskeleton3.89E-03
38GO:0015250: water channel activity4.21E-03
39GO:0009931: calcium-dependent protein serine/threonine kinase activity4.54E-03
40GO:0004683: calmodulin-dependent protein kinase activity4.71E-03
41GO:0102483: scopolin beta-glucosidase activity4.71E-03
42GO:0005096: GTPase activator activity5.22E-03
43GO:0004222: metalloendopeptidase activity5.40E-03
44GO:0003697: single-stranded DNA binding5.94E-03
45GO:0008422: beta-glucosidase activity6.31E-03
46GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.71E-03
47GO:0045735: nutrient reservoir activity9.79E-03
48GO:0003824: catalytic activity1.67E-02
49GO:0005215: transporter activity1.69E-02
50GO:0003924: GTPase activity3.45E-02
51GO:0005515: protein binding3.57E-02
52GO:0016887: ATPase activity4.71E-02
53GO:0008270: zinc ion binding4.96E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0000138: Golgi trans cisterna2.88E-05
3GO:0000502: proteasome complex6.49E-04
4GO:0008540: proteasome regulatory particle, base subcomplex9.29E-04
5GO:0005665: DNA-directed RNA polymerase II, core complex1.23E-03
6GO:0005750: mitochondrial respiratory chain complex III1.45E-03
7GO:0005769: early endosome1.67E-03
8GO:0045271: respiratory chain complex I1.92E-03
9GO:0016020: membrane2.55E-03
10GO:0005794: Golgi apparatus2.59E-03
11GO:0005778: peroxisomal membrane3.89E-03
12GO:0005737: cytoplasm4.15E-03
13GO:0000932: P-body4.21E-03
14GO:0005730: nucleolus4.83E-03
15GO:0005643: nuclear pore5.05E-03
16GO:0005856: cytoskeleton7.68E-03
17GO:0031966: mitochondrial membrane8.29E-03
18GO:0005777: peroxisome8.62E-03
19GO:0005747: mitochondrial respiratory chain complex I1.00E-02
20GO:0005802: trans-Golgi network1.20E-02
21GO:0005768: endosome1.37E-02
22GO:0005773: vacuole2.06E-02
23GO:0005739: mitochondrion2.34E-02
24GO:0005886: plasma membrane2.41E-02
25GO:0005743: mitochondrial inner membrane3.27E-02
26GO:0005887: integral component of plasma membrane4.29E-02
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Gene type



Gene DE type