co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090706: specification of plant organ position	0.00E+00
2	GO:1901698: response to nitrogen compound	0.00E+00
3	GO:0010450: inflorescence meristem growth	7.39E-05
4	GO:0043085: positive regulation of catalytic activity	9.76E-05
5	GO:0009644: response to high light intensity	1.45E-04
6	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	1.77E-04
7	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.77E-04
8	GO:0045165: cell fate commitment	2.99E-04
9	GO:0006000: fructose metabolic process	2.99E-04
10	GO:0006013: mannose metabolic process	2.99E-04
11	GO:0071705: nitrogen compound transport	2.99E-04
12	GO:0001678: cellular glucose homeostasis	4.32E-04
13	GO:0010023: proanthocyanidin biosynthetic process	5.75E-04
14	GO:0071249: cellular response to nitrate	5.75E-04
15	GO:0045727: positive regulation of translation	5.75E-04
16	GO:2000038: regulation of stomatal complex development	5.75E-04
17	GO:0010090: trichome morphogenesis	6.01E-04
18	GO:0007623: circadian rhythm	6.39E-04
19	GO:0045038: protein import into chloroplast thylakoid membrane	7.29E-04
20	GO:1902183: regulation of shoot apical meristem development	7.29E-04
21	GO:0010158: abaxial cell fate specification	7.29E-04
22	GO:0032876: negative regulation of DNA endoreduplication	7.29E-04
23	GO:0030308: negative regulation of cell growth	7.29E-04
24	GO:0046785: microtubule polymerization	7.29E-04
25	GO:0000741: karyogamy	8.91E-04
26	GO:1902456: regulation of stomatal opening	8.91E-04
27	GO:0009826: unidimensional cell growth	1.04E-03
28	GO:0010019: chloroplast-nucleus signaling pathway	1.06E-03
29	GO:2000037: regulation of stomatal complex patterning	1.06E-03
30	GO:0046835: carbohydrate phosphorylation	1.06E-03
31	GO:0051510: regulation of unidimensional cell growth	1.24E-03
32	GO:0050829: defense response to Gram-negative bacterium	1.24E-03
33	GO:1900057: positive regulation of leaf senescence	1.24E-03
34	GO:0009723: response to ethylene	1.31E-03
35	GO:0000028: ribosomal small subunit assembly	1.43E-03
36	GO:0009642: response to light intensity	1.43E-03
37	GO:0046620: regulation of organ growth	1.43E-03
38	GO:0006402: mRNA catabolic process	1.43E-03
39	GO:0009850: auxin metabolic process	1.43E-03
40	GO:0032544: plastid translation	1.63E-03
41	GO:0010093: specification of floral organ identity	1.63E-03
42	GO:0009932: cell tip growth	1.63E-03
43	GO:0006002: fructose 6-phosphate metabolic process	1.63E-03
44	GO:0000373: Group II intron splicing	1.83E-03
45	GO:2000024: regulation of leaf development	1.83E-03
46	GO:0048829: root cap development	2.28E-03
47	GO:0006949: syncytium formation	2.28E-03
48	GO:0009299: mRNA transcription	2.28E-03
49	GO:0009750: response to fructose	2.51E-03
50	GO:0009698: phenylpropanoid metabolic process	2.51E-03
51	GO:0008361: regulation of cell size	2.75E-03
52	GO:0005983: starch catabolic process	2.75E-03
53	GO:0015706: nitrate transport	2.75E-03
54	GO:0042545: cell wall modification	2.86E-03
55	GO:2000028: regulation of photoperiodism, flowering	3.00E-03
56	GO:0009718: anthocyanin-containing compound biosynthetic process	3.00E-03
57	GO:0009725: response to hormone	3.00E-03
58	GO:0006094: gluconeogenesis	3.00E-03
59	GO:0005986: sucrose biosynthetic process	3.00E-03
60	GO:0009742: brassinosteroid mediated signaling pathway	3.12E-03
61	GO:0009933: meristem structural organization	3.25E-03
62	GO:0010053: root epidermal cell differentiation	3.51E-03
63	GO:0010167: response to nitrate	3.51E-03
64	GO:0009734: auxin-activated signaling pathway	3.59E-03
65	GO:0006833: water transport	3.78E-03
66	GO:0009944: polarity specification of adaxial/abaxial axis	4.06E-03
67	GO:0080147: root hair cell development	4.06E-03
68	GO:0009651: response to salt stress	4.34E-03
69	GO:0003333: amino acid transmembrane transport	4.63E-03
70	GO:0045490: pectin catabolic process	5.06E-03
71	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.23E-03
72	GO:0010214: seed coat development	5.54E-03
73	GO:0006284: base-excision repair	5.54E-03
74	GO:0034220: ion transmembrane transport	6.18E-03
75	GO:0010087: phloem or xylem histogenesis	6.18E-03
76	GO:0042631: cellular response to water deprivation	6.18E-03
77	GO:0006662: glycerol ether metabolic process	6.51E-03
78	GO:0010197: polar nucleus fusion	6.51E-03
79	GO:0009741: response to brassinosteroid	6.51E-03
80	GO:0010154: fruit development	6.51E-03
81	GO:0009791: post-embryonic development	7.19E-03
82	GO:0071554: cell wall organization or biogenesis	7.53E-03
83	GO:0009828: plant-type cell wall loosening	8.61E-03
84	GO:0071805: potassium ion transmembrane transport	8.98E-03
85	GO:0046777: protein autophosphorylation	1.04E-02
86	GO:0015995: chlorophyll biosynthetic process	1.09E-02
87	GO:0010411: xyloglucan metabolic process	1.09E-02
88	GO:0015979: photosynthesis	1.11E-02
89	GO:0016311: dephosphorylation	1.13E-02
90	GO:0018298: protein-chromophore linkage	1.17E-02
91	GO:0045892: negative regulation of transcription, DNA-templated	1.18E-02
92	GO:0007568: aging	1.30E-02
93	GO:0006865: amino acid transport	1.34E-02
94	GO:0034599: cellular response to oxidative stress	1.43E-02
95	GO:0009926: auxin polar transport	1.66E-02
96	GO:0009744: response to sucrose	1.66E-02
97	GO:0042546: cell wall biogenesis	1.71E-02
98	GO:0006855: drug transmembrane transport	1.85E-02
99	GO:0009664: plant-type cell wall organization	1.95E-02
100	GO:0005975: carbohydrate metabolic process	2.00E-02
101	GO:0006364: rRNA processing	2.05E-02
102	GO:0009585: red, far-red light phototransduction	2.05E-02
103	GO:0006813: potassium ion transport	2.05E-02
104	GO:0009909: regulation of flower development	2.21E-02
105	GO:0006096: glycolytic process	2.31E-02
106	GO:0009735: response to cytokinin	2.33E-02
107	GO:0009626: plant-type hypersensitive response	2.42E-02
108	GO:0009740: gibberellic acid mediated signaling pathway	2.53E-02
109	GO:0055085: transmembrane transport	3.24E-02
110	GO:0006413: translational initiation	3.70E-02
111	GO:0040008: regulation of growth	3.77E-02
112	GO:0009739: response to gibberellin	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
3	GO:0046906: tetrapyrrole binding	7.39E-05
4	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	7.39E-05
5	GO:0005094: Rho GDP-dissociation inhibitor activity	1.77E-04
6	GO:0043425: bHLH transcription factor binding	1.77E-04
7	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.77E-04
8	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.77E-04
9	GO:0005528: FK506 binding	2.13E-04
10	GO:0047274: galactinol-sucrose galactosyltransferase activity	2.99E-04
11	GO:0046556: alpha-L-arabinofuranosidase activity	5.75E-04
12	GO:0004396: hexokinase activity	5.75E-04
13	GO:0019158: mannokinase activity	5.75E-04
14	GO:0010328: auxin influx transmembrane transporter activity	5.75E-04
15	GO:0005536: glucose binding	5.75E-04
16	GO:0008725: DNA-3-methyladenine glycosylase activity	7.29E-04
17	GO:0004559: alpha-mannosidase activity	1.06E-03
18	GO:0019899: enzyme binding	1.24E-03
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.81E-03
20	GO:0008047: enzyme activator activity	2.28E-03
21	GO:0045330: aspartyl esterase activity	2.30E-03
22	GO:0030599: pectinesterase activity	2.78E-03
23	GO:0004565: beta-galactosidase activity	3.00E-03
24	GO:0008081: phosphoric diester hydrolase activity	3.00E-03
25	GO:0008266: poly(U) RNA binding	3.25E-03
26	GO:0004190: aspartic-type endopeptidase activity	3.51E-03
27	GO:0019843: rRNA binding	3.68E-03
28	GO:0015079: potassium ion transmembrane transporter activity	4.34E-03
29	GO:0022891: substrate-specific transmembrane transporter activity	5.23E-03
30	GO:0047134: protein-disulfide reductase activity	5.86E-03
31	GO:0042802: identical protein binding	6.43E-03
32	GO:0004791: thioredoxin-disulfide reductase activity	6.84E-03
33	GO:0050662: coenzyme binding	6.84E-03
34	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.85E-03
35	GO:0016762: xyloglucan:xyloglucosyl transferase activity	7.53E-03
36	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.25E-03
37	GO:0016413: O-acetyltransferase activity	9.36E-03
38	GO:0015250: water channel activity	9.74E-03
39	GO:0016168: chlorophyll binding	1.01E-02
40	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.09E-02
41	GO:0005096: GTPase activator activity	1.22E-02
42	GO:0015238: drug transmembrane transporter activity	1.22E-02
43	GO:0004185: serine-type carboxypeptidase activity	1.66E-02
44	GO:0015293: symporter activity	1.80E-02
45	GO:0003729: mRNA binding	1.95E-02
46	GO:0015171: amino acid transmembrane transporter activity	2.21E-02
47	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.47E-02
48	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.47E-02
49	GO:0015035: protein disulfide oxidoreductase activity	2.69E-02
50	GO:0016758: transferase activity, transferring hexosyl groups	3.04E-02
51	GO:0016787: hydrolase activity	3.08E-02
52	GO:0030246: carbohydrate binding	3.43E-02
53	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.70E-02
54	GO:0046910: pectinesterase inhibitor activity	3.70E-02
55	GO:0015297: antiporter activity	3.77E-02
56	GO:0008017: microtubule binding	4.02E-02
57	GO:0008194: UDP-glycosyltransferase activity	4.22E-02
58	GO:0003743: translation initiation factor activity	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0009547: plastid ribosome	7.39E-05
2	GO:0080085: signal recognition particle, chloroplast targeting	1.77E-04
3	GO:0009543: chloroplast thylakoid lumen	4.25E-04
4	GO:0030660: Golgi-associated vesicle membrane	5.75E-04
5	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	5.75E-04
6	GO:0030529: intracellular ribonucleoprotein complex	7.56E-04
7	GO:0009505: plant-type cell wall	7.77E-04
8	GO:0009570: chloroplast stroma	1.27E-03
9	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.43E-03
10	GO:0005618: cell wall	1.59E-03
11	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.63E-03
12	GO:0005576: extracellular region	1.72E-03
13	GO:0008180: COP9 signalosome	1.83E-03
14	GO:0055028: cortical microtubule	2.28E-03
15	GO:0005765: lysosomal membrane	2.51E-03
16	GO:0031307: integral component of mitochondrial outer membrane	2.75E-03
17	GO:0005578: proteinaceous extracellular matrix	3.00E-03
18	GO:0000312: plastid small ribosomal subunit	3.25E-03
19	GO:0005623: cell	3.78E-03
20	GO:0048046: apoplast	4.99E-03
21	GO:0009579: thylakoid	6.04E-03
22	GO:0009534: chloroplast thylakoid	6.12E-03
23	GO:0009523: photosystem II	7.19E-03
24	GO:0071944: cell periphery	8.25E-03
25	GO:0009535: chloroplast thylakoid membrane	8.57E-03
26	GO:0019005: SCF ubiquitin ligase complex	1.17E-02
27	GO:0009507: chloroplast	1.86E-02
28	GO:0000502: proteasome complex	2.05E-02
29	GO:0010008: endosome membrane	2.37E-02
30	GO:0009941: chloroplast envelope	2.60E-02
31	GO:0010287: plastoglobule	2.98E-02
32	GO:0005773: vacuole	3.11E-02
33	GO:0009506: plasmodesma	4.50E-02
34	GO:0022627: cytosolic small ribosomal subunit	4.75E-02