co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051245: negative regulation of cellular defense response	5.48E-05
2	GO:0000266: mitochondrial fission	7.32E-05
3	GO:0010167: response to nitrate	1.11E-04
4	GO:0051258: protein polymerization	1.34E-04
5	GO:0045905: positive regulation of translational termination	1.34E-04
6	GO:0046740: transport of virus in host, cell to cell	1.34E-04
7	GO:0015914: phospholipid transport	1.34E-04
8	GO:0045901: positive regulation of translational elongation	1.34E-04
9	GO:0080185: effector dependent induction by symbiont of host immune response	1.34E-04
10	GO:0010618: aerenchyma formation	1.34E-04
11	GO:0080181: lateral root branching	1.34E-04
12	GO:0006452: translational frameshifting	1.34E-04
13	GO:0009626: plant-type hypersensitive response	1.57E-04
14	GO:0015695: organic cation transport	2.28E-04
15	GO:0055074: calcium ion homeostasis	2.28E-04
16	GO:0061025: membrane fusion	3.14E-04
17	GO:0002679: respiratory burst involved in defense response	3.33E-04
18	GO:0006612: protein targeting to membrane	3.33E-04
19	GO:0015696: ammonium transport	3.33E-04
20	GO:0010071: root meristem specification	3.33E-04
21	GO:0070301: cellular response to hydrogen peroxide	3.33E-04
22	GO:0072488: ammonium transmembrane transport	4.45E-04
23	GO:0010363: regulation of plant-type hypersensitive response	4.45E-04
24	GO:0009816: defense response to bacterium, incompatible interaction	5.47E-04
25	GO:0000304: response to singlet oxygen	5.66E-04
26	GO:0046283: anthocyanin-containing compound metabolic process	5.66E-04
27	GO:0009627: systemic acquired resistance	5.76E-04
28	GO:0010942: positive regulation of cell death	6.92E-04
29	GO:0000911: cytokinesis by cell plate formation	8.25E-04
30	GO:0009094: L-phenylalanine biosynthetic process	8.25E-04
31	GO:0009612: response to mechanical stimulus	8.25E-04
32	GO:0010310: regulation of hydrogen peroxide metabolic process	8.25E-04
33	GO:0044550: secondary metabolite biosynthetic process	9.72E-04
34	GO:0006887: exocytosis	9.88E-04
35	GO:0030162: regulation of proteolysis	1.11E-03
36	GO:0010078: maintenance of root meristem identity	1.11E-03
37	GO:0010492: maintenance of shoot apical meristem identity	1.11E-03
38	GO:0016559: peroxisome fission	1.11E-03
39	GO:0006367: transcription initiation from RNA polymerase II promoter	1.26E-03
40	GO:0010204: defense response signaling pathway, resistance gene-independent	1.26E-03
41	GO:0042742: defense response to bacterium	1.38E-03
42	GO:0006952: defense response	1.38E-03
43	GO:0009821: alkaloid biosynthetic process	1.41E-03
44	GO:0051865: protein autoubiquitination	1.41E-03
45	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.58E-03
46	GO:0006896: Golgi to vacuole transport	1.75E-03
47	GO:0006032: chitin catabolic process	1.75E-03
48	GO:0043069: negative regulation of programmed cell death	1.75E-03
49	GO:0015706: nitrate transport	2.11E-03
50	GO:0012501: programmed cell death	2.11E-03
51	GO:0006468: protein phosphorylation	2.67E-03
52	GO:0042343: indole glucosinolate metabolic process	2.70E-03
53	GO:0010053: root epidermal cell differentiation	2.70E-03
54	GO:0009863: salicylic acid mediated signaling pathway	3.11E-03
55	GO:0006413: translational initiation	3.20E-03
56	GO:0006874: cellular calcium ion homeostasis	3.32E-03
57	GO:0048278: vesicle docking	3.54E-03
58	GO:0016998: cell wall macromolecule catabolic process	3.54E-03
59	GO:0098542: defense response to other organism	3.54E-03
60	GO:0009814: defense response, incompatible interaction	3.77E-03
61	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.77E-03
62	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.83E-03
63	GO:0010089: xylem development	4.23E-03
64	GO:0009737: response to abscisic acid	4.34E-03
65	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.47E-03
66	GO:0080022: primary root development	4.71E-03
67	GO:0006623: protein targeting to vacuole	5.48E-03
68	GO:0010183: pollen tube guidance	5.48E-03
69	GO:0080167: response to karrikin	6.54E-03
70	GO:0010200: response to chitin	6.76E-03
71	GO:0006904: vesicle docking involved in exocytosis	6.83E-03
72	GO:0001666: response to hypoxia	7.40E-03
73	GO:0009615: response to virus	7.40E-03
74	GO:0006906: vesicle fusion	7.99E-03
75	GO:0042128: nitrate assimilation	7.99E-03
76	GO:0006886: intracellular protein transport	8.07E-03
77	GO:0009817: defense response to fungus, incompatible interaction	8.91E-03
78	GO:0010311: lateral root formation	9.22E-03
79	GO:0009751: response to salicylic acid	9.52E-03
80	GO:0006629: lipid metabolic process	9.65E-03
81	GO:0009867: jasmonic acid mediated signaling pathway	1.05E-02
82	GO:0006897: endocytosis	1.19E-02
83	GO:0051707: response to other organism	1.26E-02
84	GO:0031347: regulation of defense response	1.44E-02
85	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.44E-02
86	GO:0009611: response to wounding	1.76E-02
87	GO:0009620: response to fungus	1.87E-02
88	GO:0055085: transmembrane transport	2.18E-02
89	GO:0009058: biosynthetic process	2.43E-02
90	GO:0006470: protein dephosphorylation	3.24E-02
91	GO:0010468: regulation of gene expression	3.34E-02
92	GO:0015031: protein transport	4.41E-02
93	GO:0009723: response to ethylene	4.45E-02
94	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.79E-02
95	GO:0016192: vesicle-mediated transport	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:1901149: salicylic acid binding	5.48E-05
2	GO:0047769: arogenate dehydratase activity	4.45E-04
3	GO:0004664: prephenate dehydratase activity	4.45E-04
4	GO:0004040: amidase activity	5.66E-04
5	GO:0008519: ammonium transmembrane transporter activity	6.92E-04
6	GO:0008143: poly(A) binding	9.62E-04
7	GO:0005484: SNAP receptor activity	1.07E-03
8	GO:0004674: protein serine/threonine kinase activity	1.10E-03
9	GO:0043022: ribosome binding	1.11E-03
10	GO:0071949: FAD binding	1.41E-03
11	GO:0016844: strictosidine synthase activity	1.58E-03
12	GO:0015112: nitrate transmembrane transporter activity	1.58E-03
13	GO:0004713: protein tyrosine kinase activity	1.75E-03
14	GO:0004568: chitinase activity	1.75E-03
15	GO:0005543: phospholipid binding	1.93E-03
16	GO:0008559: xenobiotic-transporting ATPase activity	1.93E-03
17	GO:0047372: acylglycerol lipase activity	1.93E-03
18	GO:0005217: intracellular ligand-gated ion channel activity	2.70E-03
19	GO:0004970: ionotropic glutamate receptor activity	2.70E-03
20	GO:0003743: translation initiation factor activity	3.99E-03
21	GO:0016597: amino acid binding	7.11E-03
22	GO:0051213: dioxygenase activity	7.40E-03
23	GO:0004871: signal transducer activity	8.20E-03
24	GO:0042803: protein homodimerization activity	8.20E-03
25	GO:0004806: triglyceride lipase activity	8.29E-03
26	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.45E-03
27	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.05E-02
28	GO:0003746: translation elongation factor activity	1.05E-02
29	GO:0000149: SNARE binding	1.12E-02
30	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.12E-02
31	GO:0005198: structural molecule activity	1.37E-02
32	GO:0016298: lipase activity	1.59E-02
33	GO:0031625: ubiquitin protein ligase binding	1.67E-02
34	GO:0051082: unfolded protein binding	1.99E-02
35	GO:0016746: transferase activity, transferring acyl groups	2.04E-02
36	GO:0019825: oxygen binding	2.45E-02
37	GO:0015144: carbohydrate transmembrane transporter activity	2.66E-02
38	GO:0005351: sugar:proton symporter activity	2.89E-02
39	GO:0008017: microtubule binding	3.04E-02
40	GO:0005509: calcium ion binding	3.21E-02
41	GO:0005506: iron ion binding	3.43E-02
42	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.49E-02
43	GO:0046982: protein heterodimerization activity	3.96E-02
44	GO:0043531: ADP binding	4.29E-02
45	GO:0005515: protein binding	4.65E-02
46	GO:0004497: monooxygenase activity	4.68E-02
47	GO:0004842: ubiquitin-protein transferase activity	4.79E-02
48	GO:0061630: ubiquitin protein ligase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0030130: clathrin coat of trans-Golgi network vesicle	2.28E-04
3	GO:0030132: clathrin coat of coated pit	2.28E-04
4	GO:0070062: extracellular exosome	3.33E-04
5	GO:0031902: late endosome membrane	9.88E-04
6	GO:0010494: cytoplasmic stress granule	1.41E-03
7	GO:0030665: clathrin-coated vesicle membrane	1.58E-03
8	GO:0005886: plasma membrane	1.68E-03
9	GO:0017119: Golgi transport complex	1.75E-03
10	GO:0005783: endoplasmic reticulum	2.18E-03
11	GO:0016021: integral component of membrane	3.43E-03
12	GO:0005741: mitochondrial outer membrane	3.54E-03
13	GO:0030136: clathrin-coated vesicle	4.47E-03
14	GO:0009504: cell plate	5.48E-03
15	GO:0000145: exocyst	6.00E-03
16	GO:0005778: peroxisomal membrane	6.83E-03
17	GO:0009506: plasmodesma	7.65E-03
18	GO:0005788: endoplasmic reticulum lumen	7.69E-03
19	GO:0019005: SCF ubiquitin ligase complex	8.91E-03
20	GO:0005774: vacuolar membrane	9.05E-03
21	GO:0000325: plant-type vacuole	9.86E-03
22	GO:0000139: Golgi membrane	1.05E-02
23	GO:0031201: SNARE complex	1.19E-02
24	GO:0005789: endoplasmic reticulum membrane	1.22E-02
25	GO:0090406: pollen tube	1.26E-02
26	GO:0005887: integral component of plasma membrane	1.31E-02
27	GO:0005794: Golgi apparatus	1.38E-02
28	GO:0031966: mitochondrial membrane	1.48E-02
29	GO:0005773: vacuole	1.72E-02
30	GO:0012505: endomembrane system	1.95E-02
31	GO:0016020: membrane	1.95E-02
32	GO:0005777: peroxisome	1.97E-02
33	GO:0009524: phragmoplast	2.43E-02
34	GO:0005874: microtubule	4.56E-02