Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54380

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1900000: regulation of anthocyanin catabolic process0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:1901698: response to nitrogen compound0.00E+00
5GO:0000372: Group I intron splicing0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
8GO:0006833: water transport1.62E-09
9GO:0034220: ion transmembrane transport2.01E-08
10GO:0080170: hydrogen peroxide transmembrane transport4.18E-05
11GO:0006086: acetyl-CoA biosynthetic process from pyruvate1.68E-04
12GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.97E-04
13GO:0006633: fatty acid biosynthetic process3.32E-04
14GO:0010450: inflorescence meristem growth3.44E-04
15GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.44E-04
16GO:0000476: maturation of 4.5S rRNA3.44E-04
17GO:0000967: rRNA 5'-end processing3.44E-04
18GO:0016119: carotene metabolic process3.44E-04
19GO:0070509: calcium ion import3.44E-04
20GO:0007263: nitric oxide mediated signal transduction3.44E-04
21GO:0046520: sphingoid biosynthetic process3.44E-04
22GO:0010480: microsporocyte differentiation3.44E-04
23GO:0006723: cuticle hydrocarbon biosynthetic process3.44E-04
24GO:0000481: maturation of 5S rRNA3.44E-04
25GO:0042547: cell wall modification involved in multidimensional cell growth3.44E-04
26GO:0034628: 'de novo' NAD biosynthetic process from aspartate3.44E-04
27GO:0034337: RNA folding3.44E-04
28GO:0042335: cuticle development3.48E-04
29GO:0008610: lipid biosynthetic process3.72E-04
30GO:0009416: response to light stimulus5.34E-04
31GO:0010206: photosystem II repair5.47E-04
32GO:0006779: porphyrin-containing compound biosynthetic process6.45E-04
33GO:0034470: ncRNA processing7.51E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly7.51E-04
35GO:0016560: protein import into peroxisome matrix, docking7.51E-04
36GO:0006695: cholesterol biosynthetic process7.51E-04
37GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.51E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process7.51E-04
39GO:0010270: photosystem II oxygen evolving complex assembly7.51E-04
40GO:0006782: protoporphyrinogen IX biosynthetic process7.52E-04
41GO:0009826: unidimensional cell growth8.09E-04
42GO:0000038: very long-chain fatty acid metabolic process8.68E-04
43GO:0015706: nitrate transport9.90E-04
44GO:0015995: chlorophyll biosynthetic process9.90E-04
45GO:0006094: gluconeogenesis1.12E-03
46GO:0009767: photosynthetic electron transport chain1.12E-03
47GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.21E-03
48GO:0006000: fructose metabolic process1.21E-03
49GO:0043447: alkane biosynthetic process1.21E-03
50GO:0043617: cellular response to sucrose starvation1.21E-03
51GO:0006013: mannose metabolic process1.21E-03
52GO:0051176: positive regulation of sulfur metabolic process1.21E-03
53GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.21E-03
54GO:0015840: urea transport1.21E-03
55GO:0071705: nitrogen compound transport1.21E-03
56GO:2001295: malonyl-CoA biosynthetic process1.21E-03
57GO:0045165: cell fate commitment1.21E-03
58GO:0010167: response to nitrate1.41E-03
59GO:0010025: wax biosynthetic process1.57E-03
60GO:0051639: actin filament network formation1.75E-03
61GO:0034059: response to anoxia1.75E-03
62GO:0055070: copper ion homeostasis1.75E-03
63GO:0006515: misfolded or incompletely synthesized protein catabolic process1.75E-03
64GO:1902476: chloride transmembrane transport1.75E-03
65GO:0007017: microtubule-based process1.92E-03
66GO:0006810: transport1.99E-03
67GO:0007623: circadian rhythm1.99E-03
68GO:0051764: actin crosslink formation2.35E-03
69GO:0071249: cellular response to nitrate2.35E-03
70GO:0030104: water homeostasis2.35E-03
71GO:0045727: positive regulation of translation2.35E-03
72GO:0042991: transcription factor import into nucleus2.35E-03
73GO:0010158: abaxial cell fate specification3.00E-03
74GO:0046785: microtubule polymerization3.00E-03
75GO:0045038: protein import into chloroplast thylakoid membrane3.00E-03
76GO:0035434: copper ion transmembrane transport3.00E-03
77GO:1902183: regulation of shoot apical meristem development3.00E-03
78GO:0016123: xanthophyll biosynthetic process3.00E-03
79GO:0009435: NAD biosynthetic process3.00E-03
80GO:0009736: cytokinin-activated signaling pathway3.06E-03
81GO:0055085: transmembrane transport3.11E-03
82GO:0042631: cellular response to water deprivation3.20E-03
83GO:0009913: epidermal cell differentiation3.71E-03
84GO:0016554: cytidine to uridine editing3.71E-03
85GO:0006828: manganese ion transport3.71E-03
86GO:0032973: amino acid export3.71E-03
87GO:0000741: karyogamy3.71E-03
88GO:0006751: glutathione catabolic process3.71E-03
89GO:0042549: photosystem II stabilization3.71E-03
90GO:0006096: glycolytic process3.79E-03
91GO:0071554: cell wall organization or biogenesis4.26E-03
92GO:0016132: brassinosteroid biosynthetic process4.26E-03
93GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.47E-03
94GO:0006694: steroid biosynthetic process4.47E-03
95GO:0048280: vesicle fusion with Golgi apparatus4.47E-03
96GO:0010583: response to cyclopentenone4.55E-03
97GO:0030163: protein catabolic process4.85E-03
98GO:0043090: amino acid import5.27E-03
99GO:0030497: fatty acid elongation5.27E-03
100GO:0006821: chloride transport5.27E-03
101GO:0048437: floral organ development5.27E-03
102GO:0009645: response to low light intensity stimulus5.27E-03
103GO:0006614: SRP-dependent cotranslational protein targeting to membrane5.27E-03
104GO:0010444: guard mother cell differentiation5.27E-03
105GO:0071805: potassium ion transmembrane transport5.49E-03
106GO:0009651: response to salt stress5.56E-03
107GO:0007155: cell adhesion6.13E-03
108GO:0006402: mRNA catabolic process6.13E-03
109GO:0009690: cytokinin metabolic process6.13E-03
110GO:0032508: DNA duplex unwinding6.13E-03
111GO:0016126: sterol biosynthetic process6.16E-03
112GO:0015979: photosynthesis6.58E-03
113GO:0009932: cell tip growth7.03E-03
114GO:0006002: fructose 6-phosphate metabolic process7.03E-03
115GO:0032544: plastid translation7.03E-03
116GO:0009808: lignin metabolic process7.03E-03
117GO:0010093: specification of floral organ identity7.03E-03
118GO:0010411: xyloglucan metabolic process7.26E-03
119GO:0016311: dephosphorylation7.65E-03
120GO:0009051: pentose-phosphate shunt, oxidative branch7.97E-03
121GO:0080144: amino acid homeostasis7.97E-03
122GO:0006098: pentose-phosphate shunt7.97E-03
123GO:2000024: regulation of leaf development7.97E-03
124GO:0033384: geranyl diphosphate biosynthetic process7.97E-03
125GO:0045337: farnesyl diphosphate biosynthetic process7.97E-03
126GO:0006783: heme biosynthetic process7.97E-03
127GO:0000373: Group II intron splicing7.97E-03
128GO:0009060: aerobic respiration7.97E-03
129GO:0018298: protein-chromophore linkage8.05E-03
130GO:0000160: phosphorelay signal transduction system8.47E-03
131GO:1900865: chloroplast RNA modification8.96E-03
132GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process8.96E-03
133GO:0006468: protein phosphorylation9.29E-03
134GO:0006896: Golgi to vacuole transport1.00E-02
135GO:0006949: syncytium formation1.00E-02
136GO:0006816: calcium ion transport1.11E-02
137GO:0009750: response to fructose1.11E-02
138GO:0048229: gametophyte development1.11E-02
139GO:0016485: protein processing1.11E-02
140GO:0007166: cell surface receptor signaling pathway1.14E-02
141GO:0030001: metal ion transport1.17E-02
142GO:0012501: programmed cell death1.22E-02
143GO:0010152: pollen maturation1.22E-02
144GO:0005983: starch catabolic process1.22E-02
145GO:0009640: photomorphogenesis1.32E-02
146GO:0005986: sucrose biosynthetic process1.33E-02
147GO:2000028: regulation of photoperiodism, flowering1.33E-02
148GO:0050826: response to freezing1.33E-02
149GO:0009718: anthocyanin-containing compound biosynthetic process1.33E-02
150GO:0010075: regulation of meristem growth1.33E-02
151GO:0042546: cell wall biogenesis1.38E-02
152GO:0009644: response to high light intensity1.43E-02
153GO:0048768: root hair cell tip growth1.45E-02
154GO:0010207: photosystem II assembly1.45E-02
155GO:0009933: meristem structural organization1.45E-02
156GO:0009934: regulation of meristem structural organization1.45E-02
157GO:0010030: positive regulation of seed germination1.58E-02
158GO:0009664: plant-type cell wall organization1.66E-02
159GO:0006813: potassium ion transport1.79E-02
160GO:0009944: polarity specification of adaxial/abaxial axis1.83E-02
161GO:0051017: actin filament bundle assembly1.83E-02
162GO:0006418: tRNA aminoacylation for protein translation1.96E-02
163GO:0009768: photosynthesis, light harvesting in photosystem I1.96E-02
164GO:0009735: response to cytokinin2.02E-02
165GO:0009414: response to water deprivation2.21E-02
166GO:0009814: defense response, incompatible interaction2.24E-02
167GO:0016226: iron-sulfur cluster assembly2.24E-02
168GO:0009626: plant-type hypersensitive response2.25E-02
169GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.38E-02
170GO:0040007: growth2.38E-02
171GO:0048443: stamen development2.53E-02
172GO:0009306: protein secretion2.53E-02
173GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.68E-02
174GO:0042147: retrograde transport, endosome to Golgi2.68E-02
175GO:0009742: brassinosteroid mediated signaling pathway2.70E-02
176GO:0048653: anther development2.83E-02
177GO:0042391: regulation of membrane potential2.83E-02
178GO:0010087: phloem or xylem histogenesis2.83E-02
179GO:0010154: fruit development2.99E-02
180GO:0010197: polar nucleus fusion2.99E-02
181GO:0009741: response to brassinosteroid2.99E-02
182GO:0009646: response to absence of light3.15E-02
183GO:0007165: signal transduction3.15E-02
184GO:0007018: microtubule-based movement3.15E-02
185GO:0009737: response to abscisic acid3.28E-02
186GO:0006623: protein targeting to vacuole3.31E-02
187GO:0048825: cotyledon development3.31E-02
188GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.47E-02
189GO:0006891: intra-Golgi vesicle-mediated transport3.47E-02
190GO:0002229: defense response to oomycetes3.47E-02
191GO:0006629: lipid metabolic process3.58E-02
192GO:0016032: viral process3.64E-02
193GO:0048235: pollen sperm cell differentiation3.64E-02
194GO:0010090: trichome morphogenesis3.81E-02
195GO:0009409: response to cold3.81E-02
196GO:0009828: plant-type cell wall loosening3.98E-02
197GO:0040008: regulation of growth4.19E-02
198GO:0045490: pectin catabolic process4.38E-02
199GO:0001666: response to hypoxia4.51E-02
200GO:0010027: thylakoid membrane organization4.51E-02
201GO:0005975: carbohydrate metabolic process4.59E-02
202GO:0042128: nitrate assimilation4.87E-02
RankGO TermAdjusted P value
1GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
2GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
3GO:0038198: auxin receptor activity0.00E+00
4GO:0008987: quinolinate synthetase A activity0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0050614: delta24-sterol reductase activity0.00E+00
9GO:0015250: water channel activity5.20E-09
10GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity7.42E-05
11GO:0005528: FK506 binding1.47E-04
12GO:0019843: rRNA binding2.14E-04
13GO:0047807: cytokinin 7-beta-glucosyltransferase activity3.44E-04
14GO:0080062: cytokinin 9-beta-glucosyltransferase activity3.44E-04
15GO:0015200: methylammonium transmembrane transporter activity3.44E-04
16GO:0004655: porphobilinogen synthase activity3.44E-04
17GO:0009671: nitrate:proton symporter activity3.44E-04
18GO:0005221: intracellular cyclic nucleotide activated cation channel activity3.44E-04
19GO:0000248: C-5 sterol desaturase activity3.44E-04
20GO:0000170: sphingosine hydroxylase activity3.44E-04
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.51E-04
22GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.51E-04
23GO:0042284: sphingolipid delta-4 desaturase activity7.51E-04
24GO:0015929: hexosaminidase activity7.51E-04
25GO:0004563: beta-N-acetylhexosaminidase activity7.51E-04
26GO:0000822: inositol hexakisphosphate binding7.51E-04
27GO:0010291: carotene beta-ring hydroxylase activity7.51E-04
28GO:0003839: gamma-glutamylcyclotransferase activity7.51E-04
29GO:0008236: serine-type peptidase activity1.06E-03
30GO:0016531: copper chaperone activity1.21E-03
31GO:0019829: cation-transporting ATPase activity1.21E-03
32GO:0002161: aminoacyl-tRNA editing activity1.21E-03
33GO:0004075: biotin carboxylase activity1.21E-03
34GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity1.21E-03
35GO:0004252: serine-type endopeptidase activity1.43E-03
36GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.57E-03
37GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.57E-03
38GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.57E-03
39GO:0017057: 6-phosphogluconolactonase activity1.75E-03
40GO:0001872: (1->3)-beta-D-glucan binding1.75E-03
41GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.79E-03
42GO:0015079: potassium ion transmembrane transporter activity1.92E-03
43GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.35E-03
44GO:0005253: anion channel activity2.35E-03
45GO:0004506: squalene monooxygenase activity2.35E-03
46GO:0015204: urea transmembrane transporter activity2.35E-03
47GO:0010011: auxin binding2.35E-03
48GO:0016836: hydro-lyase activity2.35E-03
49GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.55E-03
50GO:0009922: fatty acid elongase activity3.00E-03
51GO:0003989: acetyl-CoA carboxylase activity3.00E-03
52GO:0004332: fructose-bisphosphate aldolase activity3.71E-03
53GO:0042578: phosphoric ester hydrolase activity3.71E-03
54GO:0008519: ammonium transmembrane transporter activity3.71E-03
55GO:0005247: voltage-gated chloride channel activity3.71E-03
56GO:0016762: xyloglucan:xyloglucosyl transferase activity4.26E-03
57GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.47E-03
58GO:0005261: cation channel activity4.47E-03
59GO:0004559: alpha-mannosidase activity4.47E-03
60GO:0005242: inward rectifier potassium channel activity4.47E-03
61GO:0000156: phosphorelay response regulator activity4.85E-03
62GO:0016787: hydrolase activity4.87E-03
63GO:0005200: structural constituent of cytoskeleton5.49E-03
64GO:0016413: O-acetyltransferase activity5.82E-03
65GO:0008312: 7S RNA binding6.13E-03
66GO:0004033: aldo-keto reductase (NADP) activity6.13E-03
67GO:0016168: chlorophyll binding6.52E-03
68GO:0005375: copper ion transmembrane transporter activity7.03E-03
69GO:0016798: hydrolase activity, acting on glycosyl bonds7.26E-03
70GO:0004337: geranyltranstransferase activity7.97E-03
71GO:0005384: manganese ion transmembrane transporter activity8.96E-03
72GO:0015112: nitrate transmembrane transporter activity8.96E-03
73GO:0003824: catalytic activity9.33E-03
74GO:0008047: enzyme activator activity1.00E-02
75GO:0004161: dimethylallyltranstransferase activity1.11E-02
76GO:0000049: tRNA binding1.22E-02
77GO:0008081: phosphoric diester hydrolase activity1.33E-02
78GO:0004565: beta-galactosidase activity1.33E-02
79GO:0004022: alcohol dehydrogenase (NAD) activity1.33E-02
80GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.33E-02
81GO:0015095: magnesium ion transmembrane transporter activity1.33E-02
82GO:0005262: calcium channel activity1.33E-02
83GO:0005516: calmodulin binding1.39E-02
84GO:0035091: phosphatidylinositol binding1.43E-02
85GO:0004674: protein serine/threonine kinase activity1.44E-02
86GO:0008266: poly(U) RNA binding1.45E-02
87GO:0030553: cGMP binding1.58E-02
88GO:0004190: aspartic-type endopeptidase activity1.58E-02
89GO:0030552: cAMP binding1.58E-02
90GO:0031409: pigment binding1.70E-02
91GO:0005216: ion channel activity1.96E-02
92GO:0004176: ATP-dependent peptidase activity2.10E-02
93GO:0033612: receptor serine/threonine kinase binding2.10E-02
94GO:0019706: protein-cysteine S-palmitoyltransferase activity2.10E-02
95GO:0030570: pectate lyase activity2.38E-02
96GO:0022891: substrate-specific transmembrane transporter activity2.38E-02
97GO:0016746: transferase activity, transferring acyl groups2.62E-02
98GO:0004812: aminoacyl-tRNA ligase activity2.68E-02
99GO:0030551: cyclic nucleotide binding2.83E-02
100GO:0005199: structural constituent of cell wall2.99E-02
101GO:0050662: coenzyme binding3.15E-02
102GO:0016829: lyase activity3.45E-02
103GO:0003924: GTPase activity3.58E-02
104GO:0051015: actin filament binding3.81E-02
105GO:0005515: protein binding4.05E-02
106GO:0016722: oxidoreductase activity, oxidizing metal ions4.15E-02
107GO:0016597: amino acid binding4.33E-02
108GO:0004672: protein kinase activity4.36E-02
109GO:0003729: mRNA binding4.45E-02
110GO:0008017: microtubule binding4.58E-02
RankGO TermAdjusted P value
1GO:0043233: organelle lumen0.00E+00
2GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009570: chloroplast stroma5.31E-09
5GO:0005886: plasma membrane1.80E-07
6GO:0009507: chloroplast2.20E-07
7GO:0009543: chloroplast thylakoid lumen2.03E-06
8GO:0005887: integral component of plasma membrane5.62E-05
9GO:0016020: membrane9.22E-05
10GO:0009941: chloroplast envelope1.16E-04
11GO:0031977: thylakoid lumen2.76E-04
12GO:0042807: central vacuole2.96E-04
13GO:0009782: photosystem I antenna complex3.44E-04
14GO:0043674: columella3.44E-04
15GO:0009344: nitrite reductase complex [NAD(P)H]3.44E-04
16GO:0009505: plant-type cell wall4.35E-04
17GO:0045298: tubulin complex5.47E-04
18GO:0016021: integral component of membrane5.83E-04
19GO:0046658: anchored component of plasma membrane6.57E-04
20GO:0009535: chloroplast thylakoid membrane7.08E-04
21GO:0080085: signal recognition particle, chloroplast targeting7.51E-04
22GO:0009534: chloroplast thylakoid8.13E-04
23GO:0005782: peroxisomal matrix1.21E-03
24GO:0005618: cell wall1.35E-03
25GO:0031225: anchored component of membrane1.42E-03
26GO:0032432: actin filament bundle1.75E-03
27GO:0009654: photosystem II oxygen evolving complex1.92E-03
28GO:0009579: thylakoid2.76E-03
29GO:0005773: vacuole3.17E-03
30GO:0034707: chloride channel complex3.71E-03
31GO:0019898: extrinsic component of membrane3.98E-03
32GO:0009533: chloroplast stromal thylakoid5.27E-03
33GO:0012507: ER to Golgi transport vesicle membrane6.13E-03
34GO:0030529: intracellular ribonucleoprotein complex6.16E-03
35GO:0005794: Golgi apparatus6.51E-03
36GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.03E-03
37GO:0000326: protein storage vacuole7.03E-03
38GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.97E-03
39GO:0009705: plant-type vacuole membrane9.64E-03
40GO:0055028: cortical microtubule1.00E-02
41GO:0009506: plasmodesma1.00E-02
42GO:0005884: actin filament1.11E-02
43GO:0032040: small-subunit processome1.22E-02
44GO:0030095: chloroplast photosystem II1.45E-02
45GO:0000312: plastid small ribosomal subunit1.45E-02
46GO:0030659: cytoplasmic vesicle membrane1.45E-02
47GO:0005774: vacuolar membrane1.48E-02
48GO:0030076: light-harvesting complex1.58E-02
49GO:0005789: endoplasmic reticulum membrane1.76E-02
50GO:0009532: plastid stroma2.10E-02
51GO:0005874: microtubule2.11E-02
52GO:0031969: chloroplast membrane2.21E-02
53GO:0005576: extracellular region2.27E-02
54GO:0005871: kinesin complex2.68E-02
55GO:0010287: plastoglobule3.02E-02
56GO:0009523: photosystem II3.31E-02
57GO:0048046: apoplast3.86E-02
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Gene type



Gene DE type