co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G54140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0002376: immune system process	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
6	GO:0006182: cGMP biosynthetic process	0.00E+00
7	GO:0006952: defense response	2.37E-07
8	GO:0006468: protein phosphorylation	2.54E-07
9	GO:0010942: positive regulation of cell death	3.90E-05
10	GO:1900056: negative regulation of leaf senescence	7.34E-05
11	GO:0042742: defense response to bacterium	1.23E-04
12	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.40E-04
13	GO:1990022: RNA polymerase III complex localization to nucleus	1.40E-04
14	GO:0044376: RNA polymerase II complex import to nucleus	1.40E-04
15	GO:0060862: negative regulation of floral organ abscission	1.40E-04
16	GO:0051938: L-glutamate import	1.40E-04
17	GO:1990641: response to iron ion starvation	1.40E-04
18	GO:0006099: tricarboxylic acid cycle	3.14E-04
19	GO:0031349: positive regulation of defense response	3.20E-04
20	GO:0006101: citrate metabolic process	3.20E-04
21	GO:0015865: purine nucleotide transport	3.20E-04
22	GO:0019752: carboxylic acid metabolic process	3.20E-04
23	GO:0043091: L-arginine import	3.20E-04
24	GO:0031204: posttranslational protein targeting to membrane, translocation	3.20E-04
25	GO:0015802: basic amino acid transport	3.20E-04
26	GO:0034976: response to endoplasmic reticulum stress	4.54E-04
27	GO:0002230: positive regulation of defense response to virus by host	5.26E-04
28	GO:0055074: calcium ion homeostasis	5.26E-04
29	GO:0046902: regulation of mitochondrial membrane permeability	7.53E-04
30	GO:1902290: positive regulation of defense response to oomycetes	7.53E-04
31	GO:0001676: long-chain fatty acid metabolic process	7.53E-04
32	GO:0010116: positive regulation of abscisic acid biosynthetic process	7.53E-04
33	GO:0033356: UDP-L-arabinose metabolic process	9.98E-04
34	GO:0080037: negative regulation of cytokinin-activated signaling pathway	9.98E-04
35	GO:0046345: abscisic acid catabolic process	9.98E-04
36	GO:0006457: protein folding	1.09E-03
37	GO:0010193: response to ozone	1.20E-03
38	GO:0000302: response to reactive oxygen species	1.20E-03
39	GO:2000762: regulation of phenylpropanoid metabolic process	1.26E-03
40	GO:0030041: actin filament polymerization	1.26E-03
41	GO:0046283: anthocyanin-containing compound metabolic process	1.26E-03
42	GO:0006097: glyoxylate cycle	1.26E-03
43	GO:0018344: protein geranylgeranylation	1.26E-03
44	GO:0007264: small GTPase mediated signal transduction	1.27E-03
45	GO:0030163: protein catabolic process	1.35E-03
46	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.55E-03
47	GO:0006561: proline biosynthetic process	1.55E-03
48	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	1.55E-03
49	GO:0010405: arabinogalactan protein metabolic process	1.55E-03
50	GO:0043248: proteasome assembly	1.55E-03
51	GO:0009816: defense response to bacterium, incompatible interaction	1.81E-03
52	GO:0010150: leaf senescence	1.85E-03
53	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.86E-03
54	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.86E-03
55	GO:0019745: pentacyclic triterpenoid biosynthetic process	2.18E-03
56	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.18E-03
57	GO:1900057: positive regulation of leaf senescence	2.18E-03
58	GO:1902074: response to salt	2.18E-03
59	GO:0007166: cell surface receptor signaling pathway	2.19E-03
60	GO:0008219: cell death	2.22E-03
61	GO:0009617: response to bacterium	2.32E-03
62	GO:0006499: N-terminal protein myristoylation	2.45E-03
63	GO:0030162: regulation of proteolysis	2.52E-03
64	GO:0006102: isocitrate metabolic process	2.52E-03
65	GO:0009061: anaerobic respiration	2.52E-03
66	GO:0010120: camalexin biosynthetic process	2.88E-03
67	GO:0010204: defense response signaling pathway, resistance gene-independent	2.88E-03
68	GO:0030968: endoplasmic reticulum unfolded protein response	2.88E-03
69	GO:0009699: phenylpropanoid biosynthetic process	2.88E-03
70	GO:0009060: aerobic respiration	3.26E-03
71	GO:0046685: response to arsenic-containing substance	3.26E-03
72	GO:0015031: protein transport	3.63E-03
73	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.65E-03
74	GO:1900426: positive regulation of defense response to bacterium	3.65E-03
75	GO:0006855: drug transmembrane transport	4.20E-03
76	GO:0031347: regulation of defense response	4.36E-03
77	GO:0015770: sucrose transport	4.48E-03
78	GO:0016485: protein processing	4.48E-03
79	GO:0015706: nitrate transport	4.92E-03
80	GO:0006790: sulfur compound metabolic process	4.92E-03
81	GO:0009718: anthocyanin-containing compound biosynthetic process	5.37E-03
82	GO:0002237: response to molecule of bacterial origin	5.84E-03
83	GO:0009626: plant-type hypersensitive response	6.11E-03
84	GO:0042343: indole glucosinolate metabolic process	6.32E-03
85	GO:0010167: response to nitrate	6.32E-03
86	GO:0046854: phosphatidylinositol phosphorylation	6.32E-03
87	GO:0009751: response to salicylic acid	6.81E-03
88	GO:0009408: response to heat	6.93E-03
89	GO:0018105: peptidyl-serine phosphorylation	7.10E-03
90	GO:0006406: mRNA export from nucleus	7.32E-03
91	GO:0005992: trehalose biosynthetic process	7.32E-03
92	GO:0006874: cellular calcium ion homeostasis	7.84E-03
93	GO:0008152: metabolic process	7.85E-03
94	GO:0003333: amino acid transmembrane transport	8.38E-03
95	GO:0016998: cell wall macromolecule catabolic process	8.38E-03
96	GO:0098542: defense response to other organism	8.38E-03
97	GO:0007165: signal transduction	8.59E-03
98	GO:0035428: hexose transmembrane transport	8.92E-03
99	GO:0010118: stomatal movement	1.12E-02
100	GO:0006520: cellular amino acid metabolic process	1.18E-02
101	GO:0048868: pollen tube development	1.18E-02
102	GO:0046323: glucose import	1.18E-02
103	GO:0002229: defense response to oomycetes	1.37E-02
104	GO:0006891: intra-Golgi vesicle-mediated transport	1.37E-02
105	GO:0009738: abscisic acid-activated signaling pathway	1.38E-02
106	GO:0010252: auxin homeostasis	1.58E-02
107	GO:0009567: double fertilization forming a zygote and endosperm	1.58E-02
108	GO:0009615: response to virus	1.79E-02
109	GO:0046686: response to cadmium ion	1.83E-02
110	GO:0009607: response to biotic stimulus	1.86E-02
111	GO:0042128: nitrate assimilation	1.93E-02
112	GO:0055085: transmembrane transport	1.94E-02
113	GO:0006970: response to osmotic stress	2.00E-02
114	GO:0016311: dephosphorylation	2.08E-02
115	GO:0009817: defense response to fungus, incompatible interaction	2.16E-02
116	GO:0030244: cellulose biosynthetic process	2.16E-02
117	GO:0009832: plant-type cell wall biogenesis	2.23E-02
118	GO:0009407: toxin catabolic process	2.31E-02
119	GO:0010200: response to chitin	2.38E-02
120	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.38E-02
121	GO:0007568: aging	2.39E-02
122	GO:0046777: protein autophosphorylation	2.46E-02
123	GO:0000724: double-strand break repair via homologous recombination	2.47E-02
124	GO:0044550: secondary metabolite biosynthetic process	2.50E-02
125	GO:0045454: cell redox homeostasis	2.75E-02
126	GO:0006839: mitochondrial transport	2.80E-02
127	GO:0006886: intracellular protein transport	2.84E-02
128	GO:0006631: fatty acid metabolic process	2.88E-02
129	GO:0009737: response to abscisic acid	2.90E-02
130	GO:0042542: response to hydrogen peroxide	2.97E-02
131	GO:0051707: response to other organism	3.06E-02
132	GO:0008643: carbohydrate transport	3.23E-02
133	GO:0009636: response to toxic substance	3.32E-02
134	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.50E-02
135	GO:0006979: response to oxidative stress	3.52E-02
136	GO:0042538: hyperosmotic salinity response	3.59E-02
137	GO:0006486: protein glycosylation	3.78E-02
138	GO:0009909: regulation of flower development	4.06E-02
139	GO:0009620: response to fungus	4.55E-02
140	GO:0009553: embryo sac development	4.75E-02
141	GO:0009624: response to nematode	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
2	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0051670: inulinase activity	0.00E+00
6	GO:0005524: ATP binding	1.63E-08
7	GO:0016301: kinase activity	1.88E-07
8	GO:0004674: protein serine/threonine kinase activity	8.66E-07
9	GO:0005093: Rab GDP-dissociation inhibitor activity	3.63E-06
10	GO:0005509: calcium ion binding	9.94E-05
11	GO:0051669: fructan beta-fructosidase activity	1.40E-04
12	GO:0031219: levanase activity	1.40E-04
13	GO:0004713: protein tyrosine kinase activity	2.09E-04
14	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.20E-04
15	GO:0008517: folic acid transporter activity	3.20E-04
16	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.20E-04
17	GO:0004566: beta-glucuronidase activity	3.20E-04
18	GO:0003994: aconitate hydratase activity	3.20E-04
19	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.26E-04
20	GO:0004383: guanylate cyclase activity	5.26E-04
21	GO:0043531: ADP binding	6.24E-04
22	GO:0015181: arginine transmembrane transporter activity	7.53E-04
23	GO:0042299: lupeol synthase activity	7.53E-04
24	GO:0015189: L-lysine transmembrane transporter activity	7.53E-04
25	GO:0003756: protein disulfide isomerase activity	7.83E-04
26	GO:0005086: ARF guanyl-nucleotide exchange factor activity	9.98E-04
27	GO:0005313: L-glutamate transmembrane transporter activity	9.98E-04
28	GO:0016866: intramolecular transferase activity	9.98E-04
29	GO:0010279: indole-3-acetic acid amido synthetase activity	9.98E-04
30	GO:0015145: monosaccharide transmembrane transporter activity	1.26E-03
31	GO:0017137: Rab GTPase binding	1.26E-03
32	GO:0000104: succinate dehydrogenase activity	1.26E-03
33	GO:0008177: succinate dehydrogenase (ubiquinone) activity	1.26E-03
34	GO:0005471: ATP:ADP antiporter activity	1.26E-03
35	GO:0010294: abscisic acid glucosyltransferase activity	1.26E-03
36	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.55E-03
37	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.55E-03
38	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.86E-03
39	GO:0102391: decanoate--CoA ligase activity	1.86E-03
40	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.91E-03
41	GO:0030247: polysaccharide binding	2.01E-03
42	GO:0004683: calmodulin-dependent protein kinase activity	2.01E-03
43	GO:0008194: UDP-glycosyltransferase activity	2.14E-03
44	GO:0004467: long-chain fatty acid-CoA ligase activity	2.18E-03
45	GO:0016831: carboxy-lyase activity	2.18E-03
46	GO:0008506: sucrose:proton symporter activity	2.18E-03
47	GO:0005096: GTPase activator activity	2.33E-03
48	GO:0004714: transmembrane receptor protein tyrosine kinase activity	2.52E-03
49	GO:0051539: 4 iron, 4 sulfur cluster binding	3.19E-03
50	GO:0015174: basic amino acid transmembrane transporter activity	3.65E-03
51	GO:0045309: protein phosphorylated amino acid binding	3.65E-03
52	GO:0015112: nitrate transmembrane transporter activity	3.65E-03
53	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.65E-03
54	GO:0019904: protein domain specific binding	4.48E-03
55	GO:0008559: xenobiotic-transporting ATPase activity	4.48E-03
56	GO:0004672: protein kinase activity	4.67E-03
57	GO:0008378: galactosyltransferase activity	4.92E-03
58	GO:0030246: carbohydrate binding	5.04E-03
59	GO:0005516: calmodulin binding	5.98E-03
60	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.30E-03
61	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.30E-03
62	GO:0005217: intracellular ligand-gated ion channel activity	6.32E-03
63	GO:0003712: transcription cofactor activity	6.32E-03
64	GO:0004970: ionotropic glutamate receptor activity	6.32E-03
65	GO:0004298: threonine-type endopeptidase activity	8.38E-03
66	GO:0016758: transferase activity, transferring hexosyl groups	8.41E-03
67	GO:0022891: substrate-specific transmembrane transporter activity	9.48E-03
68	GO:0008565: protein transporter activity	1.03E-02
69	GO:0005355: glucose transmembrane transporter activity	1.25E-02
70	GO:0016853: isomerase activity	1.25E-02
71	GO:0048038: quinone binding	1.37E-02
72	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.37E-02
73	GO:0008237: metallopeptidase activity	1.64E-02
74	GO:0016597: amino acid binding	1.71E-02
75	GO:0051213: dioxygenase activity	1.79E-02
76	GO:0004806: triglyceride lipase activity	2.00E-02
77	GO:0016757: transferase activity, transferring glycosyl groups	2.00E-02
78	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.08E-02
79	GO:0050660: flavin adenine dinucleotide binding	2.14E-02
80	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.16E-02
81	GO:0015238: drug transmembrane transporter activity	2.23E-02
82	GO:0004222: metalloendopeptidase activity	2.31E-02
83	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.39E-02
84	GO:0050897: cobalt ion binding	2.39E-02
85	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.55E-02
86	GO:0004364: glutathione transferase activity	2.97E-02
87	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.97E-02
88	GO:0003924: GTPase activity	3.39E-02
89	GO:0009055: electron carrier activity	3.64E-02
90	GO:0043565: sequence-specific DNA binding	3.94E-02
91	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
92	GO:0031625: ubiquitin protein ligase binding	4.06E-02
93	GO:0008234: cysteine-type peptidase activity	4.06E-02
94	GO:0003779: actin binding	4.75E-02
95	GO:0051082: unfolded protein binding	4.85E-02
96	GO:0016491: oxidoreductase activity	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005886: plasma membrane	1.50E-07
4	GO:0005911: cell-cell junction	1.40E-04
5	GO:0005788: endoplasmic reticulum lumen	1.60E-04
6	GO:0008541: proteasome regulatory particle, lid subcomplex	2.44E-04
7	GO:0016021: integral component of membrane	4.64E-04
8	GO:0000502: proteasome complex	6.05E-04
9	GO:0005968: Rab-protein geranylgeranyltransferase complex	7.53E-04
10	GO:0045273: respiratory chain complex II	2.52E-03
11	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.52E-03
12	GO:0019773: proteasome core complex, alpha-subunit complex	2.88E-03
13	GO:0005829: cytosol	3.72E-03
14	GO:0005765: lysosomal membrane	4.48E-03
15	GO:0090404: pollen tube tip	4.48E-03
16	GO:0005794: Golgi apparatus	5.58E-03
17	GO:0005750: mitochondrial respiratory chain complex III	5.84E-03
18	GO:0005795: Golgi stack	6.32E-03
19	GO:0005758: mitochondrial intermembrane space	7.32E-03
20	GO:0005741: mitochondrial outer membrane	8.38E-03
21	GO:0005839: proteasome core complex	8.38E-03
22	GO:0005783: endoplasmic reticulum	9.78E-03
23	GO:0016592: mediator complex	1.44E-02
24	GO:0005774: vacuolar membrane	2.06E-02
25	GO:0019005: SCF ubiquitin ligase complex	2.16E-02
26	GO:0000325: plant-type vacuole	2.39E-02
27	GO:0005743: mitochondrial inner membrane	3.16E-02
28	GO:0005635: nuclear envelope	3.97E-02
29	GO:0005747: mitochondrial respiratory chain complex I	4.35E-02
30	GO:0009505: plant-type cell wall	4.59E-02