Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53870

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006793: phosphorus metabolic process0.00E+00
2GO:2000541: positive regulation of protein geranylgeranylation0.00E+00
3GO:0006182: cGMP biosynthetic process0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0043201: response to leucine0.00E+00
6GO:0080053: response to phenylalanine0.00E+00
7GO:0002376: immune system process0.00E+00
8GO:0080052: response to histidine0.00E+00
9GO:0034976: response to endoplasmic reticulum stress1.21E-11
10GO:0009617: response to bacterium9.09E-11
11GO:0042742: defense response to bacterium1.00E-10
12GO:0006457: protein folding6.72E-09
13GO:0045454: cell redox homeostasis4.50E-08
14GO:0006102: isocitrate metabolic process9.79E-08
15GO:0006099: tricarboxylic acid cycle6.83E-07
16GO:0046686: response to cadmium ion1.11E-06
17GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.66E-06
18GO:0010120: camalexin biosynthetic process1.28E-05
19GO:0006979: response to oxidative stress3.31E-05
20GO:0010150: leaf senescence4.18E-05
21GO:0002237: response to molecule of bacterial origin7.33E-05
22GO:0009751: response to salicylic acid8.84E-05
23GO:0009697: salicylic acid biosynthetic process1.00E-04
24GO:0000162: tryptophan biosynthetic process1.04E-04
25GO:0006874: cellular calcium ion homeostasis1.40E-04
26GO:0055114: oxidation-reduction process1.92E-04
27GO:0043687: post-translational protein modification3.14E-04
28GO:0046244: salicylic acid catabolic process3.14E-04
29GO:0050691: regulation of defense response to virus by host3.14E-04
30GO:0019276: UDP-N-acetylgalactosamine metabolic process3.14E-04
31GO:0034975: protein folding in endoplasmic reticulum3.14E-04
32GO:0006047: UDP-N-acetylglucosamine metabolic process3.14E-04
33GO:1990641: response to iron ion starvation3.14E-04
34GO:0010421: hydrogen peroxide-mediated programmed cell death3.14E-04
35GO:0009700: indole phytoalexin biosynthetic process3.14E-04
36GO:0030091: protein repair3.24E-04
37GO:0030968: endoplasmic reticulum unfolded protein response3.98E-04
38GO:0006468: protein phosphorylation4.71E-04
39GO:0010112: regulation of systemic acquired resistance4.78E-04
40GO:0015865: purine nucleotide transport6.87E-04
41GO:0042939: tripeptide transport6.87E-04
42GO:0030003: cellular cation homeostasis6.87E-04
43GO:0008535: respiratory chain complex IV assembly6.87E-04
44GO:0051592: response to calcium ion6.87E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.87E-04
46GO:0009866: induced systemic resistance, ethylene mediated signaling pathway6.87E-04
47GO:0006101: citrate metabolic process6.87E-04
48GO:0044419: interspecies interaction between organisms6.87E-04
49GO:0009682: induced systemic resistance7.62E-04
50GO:0009627: systemic acquired resistance7.83E-04
51GO:0009817: defense response to fungus, incompatible interaction9.50E-04
52GO:0015031: protein transport1.01E-03
53GO:0010351: lithium ion transport1.11E-03
54GO:0006011: UDP-glucose metabolic process1.11E-03
55GO:0010272: response to silver ion1.11E-03
56GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.11E-03
57GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.11E-03
58GO:0009863: salicylic acid mediated signaling pathway1.52E-03
59GO:0006882: cellular zinc ion homeostasis1.60E-03
60GO:0010116: positive regulation of abscisic acid biosynthetic process1.60E-03
61GO:0002239: response to oomycetes1.60E-03
62GO:0046902: regulation of mitochondrial membrane permeability1.60E-03
63GO:0072334: UDP-galactose transmembrane transport1.60E-03
64GO:0031348: negative regulation of defense response2.02E-03
65GO:0071456: cellular response to hypoxia2.02E-03
66GO:0042938: dipeptide transport2.14E-03
67GO:0009306: protein secretion2.39E-03
68GO:0006952: defense response2.40E-03
69GO:0018279: protein N-linked glycosylation via asparagine2.74E-03
70GO:0005513: detection of calcium ion2.74E-03
71GO:0006097: glyoxylate cycle2.74E-03
72GO:0007029: endoplasmic reticulum organization2.74E-03
73GO:0018344: protein geranylgeranylation2.74E-03
74GO:0010225: response to UV-C2.74E-03
75GO:0000304: response to singlet oxygen2.74E-03
76GO:0034052: positive regulation of plant-type hypersensitive response2.74E-03
77GO:0006561: proline biosynthetic process3.38E-03
78GO:0010256: endomembrane system organization3.38E-03
79GO:0047484: regulation of response to osmotic stress3.38E-03
80GO:0009851: auxin biosynthetic process3.47E-03
81GO:0009620: response to fungus3.59E-03
82GO:0000302: response to reactive oxygen species3.72E-03
83GO:0009553: embryo sac development3.88E-03
84GO:0009612: response to mechanical stimulus4.06E-03
85GO:0006120: mitochondrial electron transport, NADH to ubiquinone4.06E-03
86GO:0042372: phylloquinone biosynthetic process4.06E-03
87GO:0030026: cellular manganese ion homeostasis4.80E-03
88GO:1902074: response to salt4.80E-03
89GO:1900056: negative regulation of leaf senescence4.80E-03
90GO:0009615: response to virus5.37E-03
91GO:0006875: cellular metal ion homeostasis5.57E-03
92GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.57E-03
93GO:0009819: drought recovery5.57E-03
94GO:0009808: lignin metabolic process6.39E-03
95GO:0008219: cell death7.02E-03
96GO:0046685: response to arsenic-containing substance7.24E-03
97GO:0009407: toxin catabolic process7.74E-03
98GO:0010043: response to zinc ion8.12E-03
99GO:0010205: photoinhibition8.14E-03
100GO:0043067: regulation of programmed cell death8.14E-03
101GO:0030042: actin filament depolymerization8.14E-03
102GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.14E-03
103GO:0006032: chitin catabolic process9.07E-03
104GO:0009688: abscisic acid biosynthetic process9.07E-03
105GO:0055062: phosphate ion homeostasis9.07E-03
106GO:0007064: mitotic sister chromatid cohesion9.07E-03
107GO:0006511: ubiquitin-dependent protein catabolic process9.16E-03
108GO:0009807: lignan biosynthetic process1.00E-02
109GO:0000272: polysaccharide catabolic process1.00E-02
110GO:0009651: response to salt stress1.00E-02
111GO:0006816: calcium ion transport1.00E-02
112GO:0052544: defense response by callose deposition in cell wall1.00E-02
113GO:0009089: lysine biosynthetic process via diaminopimelate1.00E-02
114GO:0042542: response to hydrogen peroxide1.10E-02
115GO:0006790: sulfur compound metabolic process1.11E-02
116GO:0012501: programmed cell death1.11E-02
117GO:0002213: defense response to insect1.11E-02
118GO:0051707: response to other organism1.15E-02
119GO:0009718: anthocyanin-containing compound biosynthetic process1.21E-02
120GO:0010075: regulation of meristem growth1.21E-02
121GO:0009636: response to toxic substance1.29E-02
122GO:0009934: regulation of meristem structural organization1.32E-02
123GO:0031347: regulation of defense response1.40E-02
124GO:0046854: phosphatidylinositol phosphorylation1.43E-02
125GO:0046688: response to copper ion1.43E-02
126GO:0009846: pollen germination1.45E-02
127GO:0042538: hyperosmotic salinity response1.45E-02
128GO:0006486: protein glycosylation1.55E-02
129GO:0051603: proteolysis involved in cellular protein catabolic process1.61E-02
130GO:0080147: root hair cell development1.66E-02
131GO:2000377: regulation of reactive oxygen species metabolic process1.66E-02
132GO:0005992: trehalose biosynthetic process1.66E-02
133GO:0009695: jasmonic acid biosynthetic process1.78E-02
134GO:0006825: copper ion transport1.78E-02
135GO:0016998: cell wall macromolecule catabolic process1.91E-02
136GO:0031408: oxylipin biosynthetic process1.91E-02
137GO:0010200: response to chitin1.93E-02
138GO:0050832: defense response to fungus1.93E-02
139GO:0009626: plant-type hypersensitive response1.96E-02
140GO:0016192: vesicle-mediated transport1.98E-02
141GO:0019748: secondary metabolic process2.03E-02
142GO:0009411: response to UV2.16E-02
143GO:0009625: response to insect2.16E-02
144GO:0010227: floral organ abscission2.16E-02
145GO:0009624: response to nematode2.22E-02
146GO:0010584: pollen exine formation2.29E-02
147GO:0006886: intracellular protein transport2.42E-02
148GO:0009737: response to abscisic acid2.54E-02
149GO:0000413: protein peptidyl-prolyl isomerization2.57E-02
150GO:0010118: stomatal movement2.57E-02
151GO:0048868: pollen tube development2.71E-02
152GO:0006814: sodium ion transport2.85E-02
153GO:0042752: regulation of circadian rhythm2.85E-02
154GO:0032259: methylation2.86E-02
155GO:0002229: defense response to oomycetes3.15E-02
156GO:0010193: response to ozone3.15E-02
157GO:0080156: mitochondrial mRNA modification3.15E-02
158GO:0009630: gravitropism3.30E-02
159GO:0007264: small GTPase mediated signal transduction3.30E-02
160GO:0030163: protein catabolic process3.45E-02
161GO:0006464: cellular protein modification process3.61E-02
162GO:0009567: double fertilization forming a zygote and endosperm3.61E-02
163GO:0010252: auxin homeostasis3.61E-02
164GO:0007166: cell surface receptor signaling pathway4.37E-02
165GO:0006906: vesicle fusion4.42E-02
166GO:0016311: dephosphorylation4.76E-02
RankGO TermAdjusted P value
1GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0005092: GDP-dissociation inhibitor activity0.00E+00
4GO:0051670: inulinase activity0.00E+00
5GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
6GO:0003756: protein disulfide isomerase activity1.26E-10
7GO:0004449: isocitrate dehydrogenase (NAD+) activity1.66E-07
8GO:0004298: threonine-type endopeptidase activity1.71E-07
9GO:0005509: calcium ion binding2.35E-05
10GO:0004674: protein serine/threonine kinase activity7.66E-05
11GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.40E-04
12GO:0033743: peptide-methionine (R)-S-oxide reductase activity1.97E-04
13GO:0008233: peptidase activity1.97E-04
14GO:0008320: protein transmembrane transporter activity2.57E-04
15GO:0048037: cofactor binding3.14E-04
16GO:0004321: fatty-acyl-CoA synthase activity3.14E-04
17GO:0008909: isochorismate synthase activity3.14E-04
18GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity3.14E-04
19GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity3.14E-04
20GO:0031219: levanase activity3.14E-04
21GO:0010285: L,L-diaminopimelate aminotransferase activity3.14E-04
22GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity3.14E-04
23GO:0004425: indole-3-glycerol-phosphate synthase activity3.14E-04
24GO:0033984: indole-3-glycerol-phosphate lyase activity3.14E-04
25GO:0051669: fructan beta-fructosidase activity3.14E-04
26GO:0004048: anthranilate phosphoribosyltransferase activity3.14E-04
27GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity3.14E-04
28GO:0048531: beta-1,3-galactosyltransferase activity6.87E-04
29GO:0015036: disulfide oxidoreductase activity6.87E-04
30GO:0042937: tripeptide transporter activity6.87E-04
31GO:0004776: succinate-CoA ligase (GDP-forming) activity6.87E-04
32GO:0003994: aconitate hydratase activity6.87E-04
33GO:0004775: succinate-CoA ligase (ADP-forming) activity6.87E-04
34GO:0016301: kinase activity6.88E-04
35GO:0051082: unfolded protein binding7.07E-04
36GO:0050660: flavin adenine dinucleotide binding8.77E-04
37GO:0004383: guanylate cyclase activity1.11E-03
38GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity1.11E-03
39GO:0000030: mannosyltransferase activity1.11E-03
40GO:0005093: Rab GDP-dissociation inhibitor activity1.11E-03
41GO:0016531: copper chaperone activity1.11E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity1.11E-03
43GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.11E-03
44GO:0004970: ionotropic glutamate receptor activity1.24E-03
45GO:0005217: intracellular ligand-gated ion channel activity1.24E-03
46GO:0005460: UDP-glucose transmembrane transporter activity1.60E-03
47GO:0035529: NADH pyrophosphatase activity1.60E-03
48GO:0004031: aldehyde oxidase activity2.14E-03
49GO:0050302: indole-3-acetaldehyde oxidase activity2.14E-03
50GO:0004576: oligosaccharyl transferase activity2.14E-03
51GO:0010279: indole-3-acetic acid amido synthetase activity2.14E-03
52GO:0015368: calcium:cation antiporter activity2.14E-03
53GO:0004834: tryptophan synthase activity2.14E-03
54GO:0042936: dipeptide transporter activity2.14E-03
55GO:0015369: calcium:proton antiporter activity2.14E-03
56GO:0009055: electron carrier activity2.22E-03
57GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity2.74E-03
58GO:0017137: Rab GTPase binding2.74E-03
59GO:0005496: steroid binding2.74E-03
60GO:0047631: ADP-ribose diphosphatase activity2.74E-03
61GO:0005471: ATP:ADP antiporter activity2.74E-03
62GO:0005459: UDP-galactose transmembrane transporter activity2.74E-03
63GO:0005507: copper ion binding2.97E-03
64GO:0030976: thiamine pyrophosphate binding3.38E-03
65GO:0000210: NAD+ diphosphatase activity3.38E-03
66GO:0005524: ATP binding3.55E-03
67GO:0005261: cation channel activity4.06E-03
68GO:0004656: procollagen-proline 4-dioxygenase activity4.06E-03
69GO:0008113: peptide-methionine (S)-S-oxide reductase activity4.06E-03
70GO:0051920: peroxiredoxin activity4.06E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.06E-03
72GO:0015035: protein disulfide oxidoreductase activity4.18E-03
73GO:0015491: cation:cation antiporter activity5.57E-03
74GO:0016209: antioxidant activity5.57E-03
75GO:0030247: polysaccharide binding6.33E-03
76GO:0004683: calmodulin-dependent protein kinase activity6.33E-03
77GO:0008757: S-adenosylmethionine-dependent methyltransferase activity6.67E-03
78GO:0016207: 4-coumarate-CoA ligase activity7.24E-03
79GO:0050897: cobalt ion binding8.12E-03
80GO:0030955: potassium ion binding8.14E-03
81GO:0004743: pyruvate kinase activity8.14E-03
82GO:0045309: protein phosphorylated amino acid binding8.14E-03
83GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.90E-03
84GO:0004568: chitinase activity9.07E-03
85GO:0008171: O-methyltransferase activity9.07E-03
86GO:0019904: protein domain specific binding1.00E-02
87GO:0008794: arsenate reductase (glutaredoxin) activity1.00E-02
88GO:0008559: xenobiotic-transporting ATPase activity1.00E-02
89GO:0004129: cytochrome-c oxidase activity1.00E-02
90GO:0051539: 4 iron, 4 sulfur cluster binding1.02E-02
91GO:0004364: glutathione transferase activity1.10E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.21E-02
93GO:0005262: calcium channel activity1.21E-02
94GO:0051287: NAD binding1.40E-02
95GO:0004190: aspartic-type endopeptidase activity1.43E-02
96GO:0008061: chitin binding1.43E-02
97GO:0031418: L-ascorbic acid binding1.66E-02
98GO:0005506: iron ion binding1.77E-02
99GO:0016779: nucleotidyltransferase activity2.03E-02
100GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.56E-02
101GO:0016853: isomerase activity2.85E-02
102GO:0048038: quinone binding3.15E-02
103GO:0008137: NADH dehydrogenase (ubiquinone) activity3.15E-02
104GO:0004197: cysteine-type endopeptidase activity3.30E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.45E-02
106GO:0008483: transaminase activity3.77E-02
107GO:0020037: heme binding3.91E-02
108GO:0051213: dioxygenase activity4.09E-02
109GO:0009931: calcium-dependent protein serine/threonine kinase activity4.42E-02
110GO:0042802: identical protein binding4.84E-02
111GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.93E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005783: endoplasmic reticulum4.37E-18
3GO:0005788: endoplasmic reticulum lumen1.86E-12
4GO:0005839: proteasome core complex1.71E-07
5GO:0000502: proteasome complex3.29E-06
6GO:0030134: ER to Golgi transport vesicle4.48E-06
7GO:0019773: proteasome core complex, alpha-subunit complex1.28E-05
8GO:0005886: plasma membrane2.88E-05
9GO:0005789: endoplasmic reticulum membrane3.37E-05
10GO:0016021: integral component of membrane4.09E-05
11GO:0005829: cytosol3.22E-04
12GO:0031314: extrinsic component of mitochondrial inner membrane6.87E-04
13GO:0005968: Rab-protein geranylgeranyltransferase complex1.60E-03
14GO:0005774: vacuolar membrane1.61E-03
15GO:0030660: Golgi-associated vesicle membrane2.14E-03
16GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.14E-03
17GO:0008250: oligosaccharyltransferase complex2.74E-03
18GO:0005746: mitochondrial respiratory chain2.74E-03
19GO:0005801: cis-Golgi network4.06E-03
20GO:0030173: integral component of Golgi membrane4.06E-03
21GO:0048046: apoplast4.79E-03
22GO:0045273: respiratory chain complex II5.57E-03
23GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)5.57E-03
24GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane5.57E-03
25GO:0000326: protein storage vacuole6.39E-03
26GO:0000325: plant-type vacuole8.12E-03
27GO:0005740: mitochondrial envelope9.07E-03
28GO:0005765: lysosomal membrane1.00E-02
29GO:0005773: vacuole1.23E-02
30GO:0030176: integral component of endoplasmic reticulum membrane1.43E-02
31GO:0016020: membrane1.61E-02
32GO:0005758: mitochondrial intermembrane space1.66E-02
33GO:0022626: cytosolic ribosome1.76E-02
34GO:0005747: mitochondrial respiratory chain complex I1.90E-02
35GO:0005741: mitochondrial outer membrane1.91E-02
36GO:0015629: actin cytoskeleton2.16E-02
37GO:0009507: chloroplast2.35E-02
38GO:0009536: plastid2.58E-02
39GO:0009505: plant-type cell wall2.67E-02
40GO:0005743: mitochondrial inner membrane2.76E-02
41GO:0005623: cell2.85E-02
42GO:0016592: mediator complex3.30E-02
43GO:0005759: mitochondrial matrix3.49E-02
44GO:0032580: Golgi cisterna membrane3.61E-02
45GO:0009705: plant-type vacuole membrane3.83E-02
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Gene type



Gene DE type