Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042493: response to drug0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.94E-08
5GO:0071555: cell wall organization1.29E-07
6GO:0010115: regulation of abscisic acid biosynthetic process4.84E-06
7GO:0042546: cell wall biogenesis2.94E-05
8GO:0009825: multidimensional cell growth9.55E-05
9GO:0010411: xyloglucan metabolic process9.89E-05
10GO:0016042: lipid catabolic process9.97E-05
11GO:0030244: cellulose biosynthetic process1.19E-04
12GO:0016051: carbohydrate biosynthetic process1.81E-04
13GO:0006468: protein phosphorylation2.27E-04
14GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.82E-04
15GO:0006633: fatty acid biosynthetic process2.86E-04
16GO:0043266: regulation of potassium ion transport3.27E-04
17GO:0032025: response to cobalt ion3.27E-04
18GO:0010480: microsporocyte differentiation3.27E-04
19GO:0080051: cutin transport3.27E-04
20GO:2000021: regulation of ion homeostasis3.27E-04
21GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway3.27E-04
22GO:0060627: regulation of vesicle-mediated transport3.27E-04
23GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.27E-04
24GO:0005980: glycogen catabolic process3.27E-04
25GO:0000032: cell wall mannoprotein biosynthetic process3.27E-04
26GO:0042538: hyperosmotic salinity response4.01E-04
27GO:0009414: response to water deprivation6.19E-04
28GO:0009826: unidimensional cell growth7.04E-04
29GO:0045717: negative regulation of fatty acid biosynthetic process7.13E-04
30GO:0010541: acropetal auxin transport7.13E-04
31GO:0010289: homogalacturonan biosynthetic process7.13E-04
32GO:0010198: synergid death7.13E-04
33GO:0006695: cholesterol biosynthetic process7.13E-04
34GO:0043255: regulation of carbohydrate biosynthetic process7.13E-04
35GO:0015908: fatty acid transport7.13E-04
36GO:0010160: formation of animal organ boundary1.16E-03
37GO:2001295: malonyl-CoA biosynthetic process1.16E-03
38GO:0033591: response to L-ascorbic acid1.16E-03
39GO:1902448: positive regulation of shade avoidance1.16E-03
40GO:0046168: glycerol-3-phosphate catabolic process1.16E-03
41GO:0010143: cutin biosynthetic process1.17E-03
42GO:0006833: water transport1.45E-03
43GO:0010025: wax biosynthetic process1.45E-03
44GO:0009413: response to flooding1.66E-03
45GO:0009298: GDP-mannose biosynthetic process1.66E-03
46GO:0007231: osmosensory signaling pathway1.66E-03
47GO:0051639: actin filament network formation1.66E-03
48GO:0034059: response to anoxia1.66E-03
49GO:0043481: anthocyanin accumulation in tissues in response to UV light1.66E-03
50GO:0009650: UV protection1.66E-03
51GO:0006072: glycerol-3-phosphate metabolic process1.66E-03
52GO:0010306: rhamnogalacturonan II biosynthetic process1.66E-03
53GO:0006424: glutamyl-tRNA aminoacylation1.66E-03
54GO:0009651: response to salt stress1.73E-03
55GO:0007017: microtubule-based process1.78E-03
56GO:0016998: cell wall macromolecule catabolic process1.95E-03
57GO:0008295: spermidine biosynthetic process2.23E-03
58GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway2.23E-03
59GO:0009956: radial pattern formation2.23E-03
60GO:0010222: stem vascular tissue pattern formation2.23E-03
61GO:0051764: actin crosslink formation2.23E-03
62GO:0006085: acetyl-CoA biosynthetic process2.23E-03
63GO:0006183: GTP biosynthetic process2.23E-03
64GO:0033500: carbohydrate homeostasis2.23E-03
65GO:0031122: cytoplasmic microtubule organization2.23E-03
66GO:0000919: cell plate assembly2.23E-03
67GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.33E-03
68GO:0009664: plant-type cell wall organization2.53E-03
69GO:0032543: mitochondrial translation2.84E-03
70GO:0000271: polysaccharide biosynthetic process2.96E-03
71GO:0034220: ion transmembrane transport2.96E-03
72GO:0010182: sugar mediated signaling pathway3.19E-03
73GO:0018258: protein O-linked glycosylation via hydroxyproline3.51E-03
74GO:0006014: D-ribose metabolic process3.51E-03
75GO:0006561: proline biosynthetic process3.51E-03
76GO:0010405: arabinogalactan protein metabolic process3.51E-03
77GO:0006751: glutathione catabolic process3.51E-03
78GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.51E-03
79GO:0060918: auxin transport3.51E-03
80GO:0006796: phosphate-containing compound metabolic process3.51E-03
81GO:0010337: regulation of salicylic acid metabolic process3.51E-03
82GO:0010583: response to cyclopentenone4.21E-03
83GO:0006694: steroid biosynthetic process4.23E-03
84GO:2000033: regulation of seed dormancy process4.23E-03
85GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.23E-03
86GO:0009612: response to mechanical stimulus4.23E-03
87GO:0009828: plant-type cell wall loosening4.77E-03
88GO:0009645: response to low light intensity stimulus4.99E-03
89GO:0048437: floral organ development4.99E-03
90GO:0010047: fruit dehiscence4.99E-03
91GO:0071669: plant-type cell wall organization or biogenesis4.99E-03
92GO:0005975: carbohydrate metabolic process5.25E-03
93GO:0007155: cell adhesion5.80E-03
94GO:0006526: arginine biosynthetic process6.65E-03
95GO:0009808: lignin metabolic process6.65E-03
96GO:0033384: geranyl diphosphate biosynthetic process7.54E-03
97GO:0045337: farnesyl diphosphate biosynthetic process7.54E-03
98GO:0009832: plant-type cell wall biogenesis7.82E-03
99GO:0009834: plant-type secondary cell wall biogenesis8.21E-03
100GO:0009638: phototropism8.48E-03
101GO:0042761: very long-chain fatty acid biosynthetic process8.48E-03
102GO:0006629: lipid metabolic process8.63E-03
103GO:0045490: pectin catabolic process8.71E-03
104GO:0006032: chitin catabolic process9.45E-03
105GO:0009688: abscisic acid biosynthetic process9.45E-03
106GO:0043069: negative regulation of programmed cell death9.45E-03
107GO:0006949: syncytium formation9.45E-03
108GO:0010215: cellulose microfibril organization9.45E-03
109GO:0010162: seed dormancy process9.45E-03
110GO:0019538: protein metabolic process9.45E-03
111GO:0007165: signal transduction1.04E-02
112GO:1903507: negative regulation of nucleic acid-templated transcription1.05E-02
113GO:0009750: response to fructose1.05E-02
114GO:0018119: peptidyl-cysteine S-nitrosylation1.05E-02
115GO:0048229: gametophyte development1.05E-02
116GO:0009684: indoleacetic acid biosynthetic process1.05E-02
117GO:0046856: phosphatidylinositol dephosphorylation1.05E-02
118GO:0010015: root morphogenesis1.05E-02
119GO:0006816: calcium ion transport1.05E-02
120GO:0008361: regulation of cell size1.15E-02
121GO:0006820: anion transport1.15E-02
122GO:0016024: CDP-diacylglycerol biosynthetic process1.15E-02
123GO:0009785: blue light signaling pathway1.26E-02
124GO:0009718: anthocyanin-containing compound biosynthetic process1.26E-02
125GO:0010075: regulation of meristem growth1.26E-02
126GO:0009725: response to hormone1.26E-02
127GO:0010588: cotyledon vascular tissue pattern formation1.26E-02
128GO:0009933: meristem structural organization1.37E-02
129GO:0010540: basipetal auxin transport1.37E-02
130GO:0009266: response to temperature stimulus1.37E-02
131GO:0009934: regulation of meristem structural organization1.37E-02
132GO:0010030: positive regulation of seed germination1.49E-02
133GO:0070588: calcium ion transmembrane transport1.49E-02
134GO:0010053: root epidermal cell differentiation1.49E-02
135GO:0010167: response to nitrate1.49E-02
136GO:0009833: plant-type primary cell wall biogenesis1.61E-02
137GO:0006486: protein glycosylation1.65E-02
138GO:0006970: response to osmotic stress1.67E-02
139GO:0051017: actin filament bundle assembly1.73E-02
140GO:0006857: oligopeptide transport1.77E-02
141GO:0009738: abscisic acid-activated signaling pathway1.95E-02
142GO:0009416: response to light stimulus2.05E-02
143GO:0031348: negative regulation of defense response2.12E-02
144GO:0030245: cellulose catabolic process2.12E-02
145GO:2000022: regulation of jasmonic acid mediated signaling pathway2.12E-02
146GO:0009411: response to UV2.25E-02
147GO:0009624: response to nematode2.35E-02
148GO:0019722: calcium-mediated signaling2.39E-02
149GO:0048443: stamen development2.39E-02
150GO:0006284: base-excision repair2.39E-02
151GO:0000413: protein peptidyl-prolyl isomerization2.68E-02
152GO:0048653: anther development2.68E-02
153GO:0042631: cellular response to water deprivation2.68E-02
154GO:0006869: lipid transport2.81E-02
155GO:0010305: leaf vascular tissue pattern formation2.82E-02
156GO:0048868: pollen tube development2.82E-02
157GO:0009958: positive gravitropism2.82E-02
158GO:0045489: pectin biosynthetic process2.82E-02
159GO:0006520: cellular amino acid metabolic process2.82E-02
160GO:0009737: response to abscisic acid2.84E-02
161GO:0019252: starch biosynthetic process3.12E-02
162GO:0009408: response to heat3.25E-02
163GO:0016132: brassinosteroid biosynthetic process3.28E-02
164GO:0071554: cell wall organization or biogenesis3.28E-02
165GO:0016310: phosphorylation3.68E-02
166GO:0016125: sterol metabolic process3.76E-02
167GO:0009639: response to red or far red light3.76E-02
168GO:0007267: cell-cell signaling3.92E-02
169GO:0051607: defense response to virus4.09E-02
170GO:0016126: sterol biosynthetic process4.26E-02
171GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.43E-02
172GO:0042128: nitrate assimilation4.61E-02
173GO:0007166: cell surface receptor signaling pathway4.63E-02
174GO:0015995: chlorophyll biosynthetic process4.78E-02
175GO:0016311: dephosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0019146: arabinose-5-phosphate isomerase activity0.00E+00
2GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
3GO:0050614: delta24-sterol reductase activity0.00E+00
4GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
5GO:0004496: mevalonate kinase activity0.00E+00
6GO:0043864: indoleacetamide hydrolase activity0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0052689: carboxylic ester hydrolase activity5.73E-06
10GO:0016788: hydrolase activity, acting on ester bonds1.99E-05
11GO:0016762: xyloglucan:xyloglucosyl transferase activity3.56E-05
12GO:0001872: (1->3)-beta-D-glucan binding3.81E-05
13GO:0016798: hydrolase activity, acting on glycosyl bonds9.89E-05
14GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.20E-04
15GO:0030570: pectate lyase activity2.25E-04
16GO:0004674: protein serine/threonine kinase activity3.02E-04
17GO:0015245: fatty acid transporter activity3.27E-04
18GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.27E-04
19GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.27E-04
20GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.27E-04
21GO:0005227: calcium activated cation channel activity3.27E-04
22GO:0008184: glycogen phosphorylase activity3.27E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.27E-04
24GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.27E-04
25GO:0080132: fatty acid alpha-hydroxylase activity3.27E-04
26GO:0008568: microtubule-severing ATPase activity3.27E-04
27GO:0004645: phosphorylase activity3.27E-04
28GO:0004476: mannose-6-phosphate isomerase activity3.27E-04
29GO:0003839: gamma-glutamylcyclotransferase activity7.13E-04
30GO:0003938: IMP dehydrogenase activity7.13E-04
31GO:0004766: spermidine synthase activity7.13E-04
32GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.13E-04
33GO:0005524: ATP binding8.33E-04
34GO:0016301: kinase activity8.72E-04
35GO:0030247: polysaccharide binding8.99E-04
36GO:0004565: beta-galactosidase activity1.04E-03
37GO:0004075: biotin carboxylase activity1.16E-03
38GO:0030267: glyoxylate reductase (NADP) activity1.16E-03
39GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.16E-03
40GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.16E-03
41GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.16E-03
42GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.16E-03
43GO:0005528: FK506 binding1.61E-03
44GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.66E-03
45GO:0003878: ATP citrate synthase activity1.66E-03
46GO:0004445: inositol-polyphosphate 5-phosphatase activity1.66E-03
47GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.14E-03
48GO:0016836: hydro-lyase activity2.23E-03
49GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.23E-03
50GO:0052793: pectin acetylesterase activity2.23E-03
51GO:0046527: glucosyltransferase activity2.23E-03
52GO:0008526: phosphatidylinositol transporter activity2.23E-03
53GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.30E-03
54GO:0016760: cellulose synthase (UDP-forming) activity2.33E-03
55GO:0004040: amidase activity2.84E-03
56GO:0003989: acetyl-CoA carboxylase activity2.84E-03
57GO:0008725: DNA-3-methyladenine glycosylase activity2.84E-03
58GO:0008381: mechanically-gated ion channel activity2.84E-03
59GO:0035673: oligopeptide transmembrane transporter activity3.51E-03
60GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.51E-03
61GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.51E-03
62GO:0008200: ion channel inhibitor activity3.51E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity3.51E-03
64GO:0004629: phospholipase C activity3.51E-03
65GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity3.51E-03
66GO:0019901: protein kinase binding3.68E-03
67GO:0005516: calmodulin binding3.72E-03
68GO:0004435: phosphatidylinositol phospholipase C activity4.23E-03
69GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.23E-03
70GO:0051920: peroxiredoxin activity4.23E-03
71GO:0015631: tubulin binding4.23E-03
72GO:0051753: mannan synthase activity4.23E-03
73GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.23E-03
74GO:0004747: ribokinase activity4.23E-03
75GO:0004427: inorganic diphosphatase activity4.99E-03
76GO:0005200: structural constituent of cytoskeleton5.07E-03
77GO:0016758: transferase activity, transferring hexosyl groups5.58E-03
78GO:0015250: water channel activity5.70E-03
79GO:0008865: fructokinase activity5.80E-03
80GO:0004714: transmembrane receptor protein tyrosine kinase activity5.80E-03
81GO:0016209: antioxidant activity5.80E-03
82GO:0016829: lyase activity6.39E-03
83GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors7.54E-03
84GO:0004337: geranyltranstransferase activity7.54E-03
85GO:0047617: acyl-CoA hydrolase activity8.48E-03
86GO:0003924: GTPase activity8.63E-03
87GO:0004568: chitinase activity9.45E-03
88GO:0015020: glucuronosyltransferase activity9.45E-03
89GO:0047372: acylglycerol lipase activity1.05E-02
90GO:0004161: dimethylallyltranstransferase activity1.05E-02
91GO:0015198: oligopeptide transporter activity1.15E-02
92GO:0008378: galactosyltransferase activity1.15E-02
93GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.15E-02
94GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.18E-02
95GO:0010329: auxin efflux transmembrane transporter activity1.26E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.26E-02
97GO:0005262: calcium channel activity1.26E-02
98GO:0004672: protein kinase activity1.40E-02
99GO:0051287: NAD binding1.48E-02
100GO:0003714: transcription corepressor activity1.73E-02
101GO:0008324: cation transmembrane transporter activity1.86E-02
102GO:0033612: receptor serine/threonine kinase binding1.99E-02
103GO:0004707: MAP kinase activity1.99E-02
104GO:0008810: cellulase activity2.25E-02
105GO:0004871: signal transducer activity2.65E-02
106GO:0003713: transcription coactivator activity2.82E-02
107GO:0016757: transferase activity, transferring glycosyl groups2.87E-02
108GO:0016787: hydrolase activity2.87E-02
109GO:0004872: receptor activity3.12E-02
110GO:0030246: carbohydrate binding3.17E-02
111GO:0051015: actin filament binding3.60E-02
112GO:0016791: phosphatase activity3.76E-02
113GO:0016759: cellulose synthase activity3.76E-02
114GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.78E-02
115GO:0016722: oxidoreductase activity, oxidizing metal ions3.92E-02
116GO:0016597: amino acid binding4.09E-02
117GO:0016413: O-acetyltransferase activity4.09E-02
118GO:0005525: GTP binding4.24E-02
119GO:0008375: acetylglucosaminyltransferase activity4.61E-02
RankGO TermAdjusted P value
1GO:0009930: longitudinal side of cell surface0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0005886: plasma membrane1.83E-15
4GO:0005618: cell wall3.38E-07
5GO:0009505: plant-type cell wall4.62E-07
6GO:0005576: extracellular region8.97E-06
7GO:0031225: anchored component of membrane1.45E-05
8GO:0009897: external side of plasma membrane1.71E-05
9GO:0048046: apoplast2.44E-05
10GO:0046658: anchored component of plasma membrane9.82E-05
11GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.27E-04
12GO:0009570: chloroplast stroma8.10E-04
13GO:0009543: chloroplast thylakoid lumen1.08E-03
14GO:0016328: lateral plasma membrane1.16E-03
15GO:0000139: Golgi membrane1.35E-03
16GO:0005875: microtubule associated complex1.45E-03
17GO:0009346: citrate lyase complex1.66E-03
18GO:0015630: microtubule cytoskeleton1.66E-03
19GO:0032432: actin filament bundle1.66E-03
20GO:0009331: glycerol-3-phosphate dehydrogenase complex1.66E-03
21GO:0031977: thylakoid lumen1.71E-03
22GO:0016020: membrane3.52E-03
23GO:0005768: endosome5.42E-03
24GO:0045298: tubulin complex7.54E-03
25GO:0009506: plasmodesma7.78E-03
26GO:0009579: thylakoid8.13E-03
27GO:0009534: chloroplast thylakoid8.27E-03
28GO:0005794: Golgi apparatus9.97E-03
29GO:0005884: actin filament1.05E-02
30GO:0005887: integral component of plasma membrane1.37E-02
31GO:0030095: chloroplast photosystem II1.37E-02
32GO:0016021: integral component of membrane1.56E-02
33GO:0009654: photosystem II oxygen evolving complex1.86E-02
34GO:0005874: microtubule1.91E-02
35GO:0019898: extrinsic component of membrane3.12E-02
36GO:0005802: trans-Golgi network4.08E-02
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Gene type



Gene DE type