GO Enrichment Analysis of Co-expressed Genes with
AT5G53020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0009773: photosynthetic electron transport in photosystem I | 1.67E-10 |
| 6 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.18E-05 |
| 7 | GO:0006810: transport | 5.03E-05 |
| 8 | GO:0015979: photosynthesis | 6.61E-05 |
| 9 | GO:0006546: glycine catabolic process | 7.42E-05 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 1.14E-04 |
| 11 | GO:0034337: RNA folding | 3.44E-04 |
| 12 | GO:0010450: inflorescence meristem growth | 3.44E-04 |
| 13 | GO:0071588: hydrogen peroxide mediated signaling pathway | 3.44E-04 |
| 14 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.44E-04 |
| 15 | GO:0000476: maturation of 4.5S rRNA | 3.44E-04 |
| 16 | GO:0000967: rRNA 5'-end processing | 3.44E-04 |
| 17 | GO:0006824: cobalt ion transport | 3.44E-04 |
| 18 | GO:0043266: regulation of potassium ion transport | 3.44E-04 |
| 19 | GO:0010480: microsporocyte differentiation | 3.44E-04 |
| 20 | GO:0031338: regulation of vesicle fusion | 3.44E-04 |
| 21 | GO:0000481: maturation of 5S rRNA | 3.44E-04 |
| 22 | GO:0080051: cutin transport | 3.44E-04 |
| 23 | GO:0071461: cellular response to redox state | 3.44E-04 |
| 24 | GO:2000021: regulation of ion homeostasis | 3.44E-04 |
| 25 | GO:0010206: photosystem II repair | 5.47E-04 |
| 26 | GO:0009638: phototropism | 6.45E-04 |
| 27 | GO:0034470: ncRNA processing | 7.51E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 7.51E-04 |
| 29 | GO:0015908: fatty acid transport | 7.51E-04 |
| 30 | GO:0034755: iron ion transmembrane transport | 7.51E-04 |
| 31 | GO:0080005: photosystem stoichiometry adjustment | 7.51E-04 |
| 32 | GO:0006013: mannose metabolic process | 1.21E-03 |
| 33 | GO:0006518: peptide metabolic process | 1.21E-03 |
| 34 | GO:0090630: activation of GTPase activity | 1.21E-03 |
| 35 | GO:0045165: cell fate commitment | 1.21E-03 |
| 36 | GO:0071484: cellular response to light intensity | 1.75E-03 |
| 37 | GO:0051639: actin filament network formation | 1.75E-03 |
| 38 | GO:0009152: purine ribonucleotide biosynthetic process | 1.75E-03 |
| 39 | GO:0046653: tetrahydrofolate metabolic process | 1.75E-03 |
| 40 | GO:0034059: response to anoxia | 1.75E-03 |
| 41 | GO:0080170: hydrogen peroxide transmembrane transport | 1.75E-03 |
| 42 | GO:0009226: nucleotide-sugar biosynthetic process | 1.75E-03 |
| 43 | GO:1901332: negative regulation of lateral root development | 1.75E-03 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 1.75E-03 |
| 45 | GO:0046836: glycolipid transport | 1.75E-03 |
| 46 | GO:0061077: chaperone-mediated protein folding | 2.11E-03 |
| 47 | GO:0009644: response to high light intensity | 2.31E-03 |
| 48 | GO:0015976: carbon utilization | 2.35E-03 |
| 49 | GO:0051764: actin crosslink formation | 2.35E-03 |
| 50 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.35E-03 |
| 51 | GO:0045727: positive regulation of translation | 2.35E-03 |
| 52 | GO:0015994: chlorophyll metabolic process | 2.35E-03 |
| 53 | GO:2000122: negative regulation of stomatal complex development | 2.35E-03 |
| 54 | GO:0031122: cytoplasmic microtubule organization | 2.35E-03 |
| 55 | GO:0010037: response to carbon dioxide | 2.35E-03 |
| 56 | GO:0010222: stem vascular tissue pattern formation | 2.35E-03 |
| 57 | GO:0008152: metabolic process | 2.97E-03 |
| 58 | GO:1902183: regulation of shoot apical meristem development | 3.00E-03 |
| 59 | GO:0010158: abaxial cell fate specification | 3.00E-03 |
| 60 | GO:0009247: glycolipid biosynthetic process | 3.00E-03 |
| 61 | GO:0016120: carotene biosynthetic process | 3.00E-03 |
| 62 | GO:0010117: photoprotection | 3.00E-03 |
| 63 | GO:0000413: protein peptidyl-prolyl isomerization | 3.20E-03 |
| 64 | GO:0042549: photosystem II stabilization | 3.71E-03 |
| 65 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 3.71E-03 |
| 66 | GO:0000741: karyogamy | 3.71E-03 |
| 67 | GO:0010405: arabinogalactan protein metabolic process | 3.71E-03 |
| 68 | GO:0042026: protein refolding | 4.47E-03 |
| 69 | GO:0006458: 'de novo' protein folding | 4.47E-03 |
| 70 | GO:0048280: vesicle fusion with Golgi apparatus | 4.47E-03 |
| 71 | GO:0010019: chloroplast-nucleus signaling pathway | 4.47E-03 |
| 72 | GO:0048437: floral organ development | 5.27E-03 |
| 73 | GO:0010196: nonphotochemical quenching | 5.27E-03 |
| 74 | GO:1900057: positive regulation of leaf senescence | 5.27E-03 |
| 75 | GO:0009645: response to low light intensity stimulus | 5.27E-03 |
| 76 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.67E-03 |
| 77 | GO:0048564: photosystem I assembly | 6.13E-03 |
| 78 | GO:0030091: protein repair | 6.13E-03 |
| 79 | GO:0009850: auxin metabolic process | 6.13E-03 |
| 80 | GO:0019375: galactolipid biosynthetic process | 6.13E-03 |
| 81 | GO:0032508: DNA duplex unwinding | 6.13E-03 |
| 82 | GO:0010027: thylakoid membrane organization | 6.16E-03 |
| 83 | GO:0042128: nitrate assimilation | 6.89E-03 |
| 84 | GO:0010093: specification of floral organ identity | 7.03E-03 |
| 85 | GO:0009932: cell tip growth | 7.03E-03 |
| 86 | GO:0071482: cellular response to light stimulus | 7.03E-03 |
| 87 | GO:0032544: plastid translation | 7.03E-03 |
| 88 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.97E-03 |
| 89 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 7.97E-03 |
| 90 | GO:2000024: regulation of leaf development | 7.97E-03 |
| 91 | GO:0048589: developmental growth | 7.97E-03 |
| 92 | GO:0018298: protein-chromophore linkage | 8.05E-03 |
| 93 | GO:0006896: Golgi to vacuole transport | 1.00E-02 |
| 94 | GO:0019538: protein metabolic process | 1.00E-02 |
| 95 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 1.00E-02 |
| 96 | GO:0006535: cysteine biosynthetic process from serine | 1.00E-02 |
| 97 | GO:0006352: DNA-templated transcription, initiation | 1.11E-02 |
| 98 | GO:0048229: gametophyte development | 1.11E-02 |
| 99 | GO:0005983: starch catabolic process | 1.22E-02 |
| 100 | GO:0010152: pollen maturation | 1.22E-02 |
| 101 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.33E-02 |
| 102 | GO:0010075: regulation of meristem growth | 1.33E-02 |
| 103 | GO:0009767: photosynthetic electron transport chain | 1.33E-02 |
| 104 | GO:0010588: cotyledon vascular tissue pattern formation | 1.33E-02 |
| 105 | GO:0010102: lateral root morphogenesis | 1.33E-02 |
| 106 | GO:0006006: glucose metabolic process | 1.33E-02 |
| 107 | GO:0018107: peptidyl-threonine phosphorylation | 1.33E-02 |
| 108 | GO:0009934: regulation of meristem structural organization | 1.45E-02 |
| 109 | GO:0010143: cutin biosynthetic process | 1.45E-02 |
| 110 | GO:0009933: meristem structural organization | 1.45E-02 |
| 111 | GO:0010053: root epidermal cell differentiation | 1.58E-02 |
| 112 | GO:0010030: positive regulation of seed germination | 1.58E-02 |
| 113 | GO:0006833: water transport | 1.70E-02 |
| 114 | GO:0009585: red, far-red light phototransduction | 1.79E-02 |
| 115 | GO:0019344: cysteine biosynthetic process | 1.83E-02 |
| 116 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.83E-02 |
| 117 | GO:0051017: actin filament bundle assembly | 1.83E-02 |
| 118 | GO:0005992: trehalose biosynthetic process | 1.83E-02 |
| 119 | GO:0006857: oligopeptide transport | 1.91E-02 |
| 120 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.96E-02 |
| 121 | GO:0009723: response to ethylene | 2.02E-02 |
| 122 | GO:0010017: red or far-red light signaling pathway | 2.24E-02 |
| 123 | GO:0016226: iron-sulfur cluster assembly | 2.24E-02 |
| 124 | GO:0048443: stamen development | 2.53E-02 |
| 125 | GO:0009306: protein secretion | 2.53E-02 |
| 126 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.68E-02 |
| 127 | GO:0042147: retrograde transport, endosome to Golgi | 2.68E-02 |
| 128 | GO:0009733: response to auxin | 2.80E-02 |
| 129 | GO:0048653: anther development | 2.83E-02 |
| 130 | GO:0042631: cellular response to water deprivation | 2.83E-02 |
| 131 | GO:0034220: ion transmembrane transport | 2.83E-02 |
| 132 | GO:0010154: fruit development | 2.99E-02 |
| 133 | GO:0009958: positive gravitropism | 2.99E-02 |
| 134 | GO:0010197: polar nucleus fusion | 2.99E-02 |
| 135 | GO:0006623: protein targeting to vacuole | 3.31E-02 |
| 136 | GO:0032259: methylation | 3.40E-02 |
| 137 | GO:0016042: lipid catabolic process | 3.46E-02 |
| 138 | GO:0071554: cell wall organization or biogenesis | 3.47E-02 |
| 139 | GO:0002229: defense response to oomycetes | 3.47E-02 |
| 140 | GO:0000302: response to reactive oxygen species | 3.47E-02 |
| 141 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.47E-02 |
| 142 | GO:0042744: hydrogen peroxide catabolic process | 3.63E-02 |
| 143 | GO:0071281: cellular response to iron ion | 3.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 2 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 5 | GO:0005528: FK506 binding | 1.40E-07 |
| 6 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.58E-07 |
| 7 | GO:0016851: magnesium chelatase activity | 4.18E-05 |
| 8 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.42E-05 |
| 9 | GO:0005096: GTPase activator activity | 1.49E-04 |
| 10 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 3.44E-04 |
| 11 | GO:0050308: sugar-phosphatase activity | 3.44E-04 |
| 12 | GO:0052638: indole-3-butyrate beta-glucosyltransferase activity | 3.44E-04 |
| 13 | GO:0008568: microtubule-severing ATPase activity | 3.44E-04 |
| 14 | GO:0019203: carbohydrate phosphatase activity | 3.44E-04 |
| 15 | GO:0015245: fatty acid transporter activity | 3.44E-04 |
| 16 | GO:0004328: formamidase activity | 3.44E-04 |
| 17 | GO:0005094: Rho GDP-dissociation inhibitor activity | 7.51E-04 |
| 18 | GO:0004047: aminomethyltransferase activity | 7.51E-04 |
| 19 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.51E-04 |
| 20 | GO:0050017: L-3-cyanoalanine synthase activity | 7.51E-04 |
| 21 | GO:0047746: chlorophyllase activity | 7.51E-04 |
| 22 | GO:0016868: intramolecular transferase activity, phosphotransferases | 7.51E-04 |
| 23 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 1.21E-03 |
| 24 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 1.21E-03 |
| 25 | GO:0050734: hydroxycinnamoyltransferase activity | 1.21E-03 |
| 26 | GO:0032947: protein complex scaffold | 1.21E-03 |
| 27 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.21E-03 |
| 28 | GO:0030267: glyoxylate reductase (NADP) activity | 1.21E-03 |
| 29 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.21E-03 |
| 30 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.21E-03 |
| 31 | GO:0001872: (1->3)-beta-D-glucan binding | 1.75E-03 |
| 32 | GO:0017089: glycolipid transporter activity | 1.75E-03 |
| 33 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.75E-03 |
| 34 | GO:0019201: nucleotide kinase activity | 1.75E-03 |
| 35 | GO:0035250: UDP-galactosyltransferase activity | 1.75E-03 |
| 36 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.75E-03 |
| 37 | GO:0001053: plastid sigma factor activity | 2.35E-03 |
| 38 | GO:0010011: auxin binding | 2.35E-03 |
| 39 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.35E-03 |
| 40 | GO:0051861: glycolipid binding | 2.35E-03 |
| 41 | GO:0004045: aminoacyl-tRNA hydrolase activity | 2.35E-03 |
| 42 | GO:0016987: sigma factor activity | 2.35E-03 |
| 43 | GO:0052793: pectin acetylesterase activity | 2.35E-03 |
| 44 | GO:0017137: Rab GTPase binding | 3.00E-03 |
| 45 | GO:2001070: starch binding | 3.71E-03 |
| 46 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 3.71E-03 |
| 47 | GO:0004130: cytochrome-c peroxidase activity | 3.71E-03 |
| 48 | GO:0042578: phosphoric ester hydrolase activity | 3.71E-03 |
| 49 | GO:0016688: L-ascorbate peroxidase activity | 3.71E-03 |
| 50 | GO:0016788: hydrolase activity, acting on ester bonds | 3.99E-03 |
| 51 | GO:0048038: quinone binding | 4.26E-03 |
| 52 | GO:0004124: cysteine synthase activity | 4.47E-03 |
| 53 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 4.47E-03 |
| 54 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.47E-03 |
| 55 | GO:0004017: adenylate kinase activity | 4.47E-03 |
| 56 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.47E-03 |
| 57 | GO:0004559: alpha-mannosidase activity | 4.47E-03 |
| 58 | GO:0016787: hydrolase activity | 4.87E-03 |
| 59 | GO:0016758: transferase activity, transferring hexosyl groups | 6.17E-03 |
| 60 | GO:0052689: carboxylic ester hydrolase activity | 6.27E-03 |
| 61 | GO:0016168: chlorophyll binding | 6.52E-03 |
| 62 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 7.97E-03 |
| 63 | GO:0005381: iron ion transmembrane transporter activity | 8.96E-03 |
| 64 | GO:0047617: acyl-CoA hydrolase activity | 8.96E-03 |
| 65 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 9.32E-03 |
| 66 | GO:0004805: trehalose-phosphatase activity | 1.00E-02 |
| 67 | GO:0009055: electron carrier activity | 1.08E-02 |
| 68 | GO:0044183: protein binding involved in protein folding | 1.11E-02 |
| 69 | GO:0008378: galactosyltransferase activity | 1.22E-02 |
| 70 | GO:0004565: beta-galactosidase activity | 1.33E-02 |
| 71 | GO:0008081: phosphoric diester hydrolase activity | 1.33E-02 |
| 72 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.33E-02 |
| 73 | GO:0004089: carbonate dehydratase activity | 1.33E-02 |
| 74 | GO:0031072: heat shock protein binding | 1.33E-02 |
| 75 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.43E-02 |
| 76 | GO:0008266: poly(U) RNA binding | 1.45E-02 |
| 77 | GO:0015293: symporter activity | 1.49E-02 |
| 78 | GO:0031409: pigment binding | 1.70E-02 |
| 79 | GO:0051536: iron-sulfur cluster binding | 1.83E-02 |
| 80 | GO:0043424: protein histidine kinase binding | 1.96E-02 |
| 81 | GO:0005509: calcium ion binding | 2.01E-02 |
| 82 | GO:0050660: flavin adenine dinucleotide binding | 2.02E-02 |
| 83 | GO:0004176: ATP-dependent peptidase activity | 2.10E-02 |
| 84 | GO:0033612: receptor serine/threonine kinase binding | 2.10E-02 |
| 85 | GO:0022891: substrate-specific transmembrane transporter activity | 2.38E-02 |
| 86 | GO:0003756: protein disulfide isomerase activity | 2.53E-02 |
| 87 | GO:0051082: unfolded protein binding | 2.55E-02 |
| 88 | GO:0050662: coenzyme binding | 3.15E-02 |
| 89 | GO:0004518: nuclease activity | 3.64E-02 |
| 90 | GO:0016491: oxidoreductase activity | 3.65E-02 |
| 91 | GO:0051015: actin filament binding | 3.81E-02 |
| 92 | GO:0008483: transaminase activity | 4.15E-02 |
| 93 | GO:0016413: O-acetyltransferase activity | 4.33E-02 |
| 94 | GO:0015250: water channel activity | 4.51E-02 |
| 95 | GO:0008194: UDP-glycosyltransferase activity | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0043224: nuclear SCF ubiquitin ligase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 8.21E-29 |
| 4 | GO:0009534: chloroplast thylakoid | 1.98E-24 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 4.73E-23 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 4.42E-16 |
| 7 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.58E-11 |
| 8 | GO:0009570: chloroplast stroma | 9.04E-10 |
| 9 | GO:0009579: thylakoid | 9.55E-09 |
| 10 | GO:0031977: thylakoid lumen | 6.64E-08 |
| 11 | GO:0009941: chloroplast envelope | 1.81E-06 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.68E-06 |
| 13 | GO:0010007: magnesium chelatase complex | 1.89E-05 |
| 14 | GO:0019898: extrinsic component of membrane | 3.62E-05 |
| 15 | GO:0030095: chloroplast photosystem II | 9.00E-05 |
| 16 | GO:0009782: photosystem I antenna complex | 3.44E-04 |
| 17 | GO:0009344: nitrite reductase complex [NAD(P)H] | 3.44E-04 |
| 18 | GO:0009505: plant-type cell wall | 4.35E-04 |
| 19 | GO:0010287: plastoglobule | 1.12E-03 |
| 20 | GO:0009897: external side of plasma membrane | 1.21E-03 |
| 21 | GO:0009531: secondary cell wall | 1.75E-03 |
| 22 | GO:0032432: actin filament bundle | 1.75E-03 |
| 23 | GO:0005960: glycine cleavage complex | 1.75E-03 |
| 24 | GO:0042651: thylakoid membrane | 1.92E-03 |
| 25 | GO:0009706: chloroplast inner membrane | 4.80E-03 |
| 26 | GO:0009533: chloroplast stromal thylakoid | 5.27E-03 |
| 27 | GO:0031969: chloroplast membrane | 5.38E-03 |
| 28 | GO:0012507: ER to Golgi transport vesicle membrane | 6.13E-03 |
| 29 | GO:0008180: COP9 signalosome | 7.97E-03 |
| 30 | GO:0005884: actin filament | 1.11E-02 |
| 31 | GO:0032040: small-subunit processome | 1.22E-02 |
| 32 | GO:0046658: anchored component of plasma membrane | 1.38E-02 |
| 33 | GO:0030076: light-harvesting complex | 1.58E-02 |
| 34 | GO:0016021: integral component of membrane | 2.62E-02 |
| 35 | GO:0005886: plasma membrane | 2.66E-02 |
| 36 | GO:0009523: photosystem II | 3.31E-02 |
| 37 | GO:0048046: apoplast | 3.86E-02 |
| 38 | GO:0031225: anchored component of membrane | 4.40E-02 |
| 39 | GO:0030529: intracellular ribonucleoprotein complex | 4.51E-02 |