GO Enrichment Analysis of Co-expressed Genes with
AT5G52010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 5 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 6 | GO:0006353: DNA-templated transcription, termination | 8.32E-10 |
| 7 | GO:1901259: chloroplast rRNA processing | 8.84E-08 |
| 8 | GO:0032544: plastid translation | 3.36E-07 |
| 9 | GO:0009658: chloroplast organization | 3.50E-07 |
| 10 | GO:0010027: thylakoid membrane organization | 8.73E-07 |
| 11 | GO:0015995: chlorophyll biosynthetic process | 1.26E-06 |
| 12 | GO:0032502: developmental process | 2.30E-05 |
| 13 | GO:0042255: ribosome assembly | 3.30E-05 |
| 14 | GO:0006783: heme biosynthetic process | 5.26E-05 |
| 15 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.07E-05 |
| 16 | GO:0034337: RNA folding | 7.07E-05 |
| 17 | GO:0006438: valyl-tRNA aminoacylation | 7.07E-05 |
| 18 | GO:0006782: protoporphyrinogen IX biosynthetic process | 7.72E-05 |
| 19 | GO:0018026: peptidyl-lysine monomethylation | 1.70E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 1.70E-04 |
| 21 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.70E-04 |
| 22 | GO:0006954: inflammatory response | 2.86E-04 |
| 23 | GO:0051604: protein maturation | 2.86E-04 |
| 24 | GO:0010239: chloroplast mRNA processing | 4.15E-04 |
| 25 | GO:0006021: inositol biosynthetic process | 5.53E-04 |
| 26 | GO:0044206: UMP salvage | 5.53E-04 |
| 27 | GO:0043097: pyrimidine nucleoside salvage | 7.00E-04 |
| 28 | GO:0046855: inositol phosphate dephosphorylation | 8.57E-04 |
| 29 | GO:0042793: transcription from plastid promoter | 8.57E-04 |
| 30 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 8.57E-04 |
| 31 | GO:0006206: pyrimidine nucleobase metabolic process | 8.57E-04 |
| 32 | GO:0048280: vesicle fusion with Golgi apparatus | 1.02E-03 |
| 33 | GO:0010019: chloroplast-nucleus signaling pathway | 1.02E-03 |
| 34 | GO:0009955: adaxial/abaxial pattern specification | 1.02E-03 |
| 35 | GO:0006400: tRNA modification | 1.19E-03 |
| 36 | GO:0017004: cytochrome complex assembly | 1.56E-03 |
| 37 | GO:0015979: photosynthesis | 1.56E-03 |
| 38 | GO:0043067: regulation of programmed cell death | 1.97E-03 |
| 39 | GO:0006896: Golgi to vacuole transport | 2.19E-03 |
| 40 | GO:0006415: translational termination | 2.41E-03 |
| 41 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.41E-03 |
| 42 | GO:0009073: aromatic amino acid family biosynthetic process | 2.41E-03 |
| 43 | GO:0006412: translation | 2.41E-03 |
| 44 | GO:0006790: sulfur compound metabolic process | 2.64E-03 |
| 45 | GO:0010020: chloroplast fission | 3.12E-03 |
| 46 | GO:0019853: L-ascorbic acid biosynthetic process | 3.37E-03 |
| 47 | GO:0046854: phosphatidylinositol phosphorylation | 3.37E-03 |
| 48 | GO:0009116: nucleoside metabolic process | 3.89E-03 |
| 49 | GO:0009790: embryo development | 4.04E-03 |
| 50 | GO:0006418: tRNA aminoacylation for protein translation | 4.17E-03 |
| 51 | GO:0016114: terpenoid biosynthetic process | 4.44E-03 |
| 52 | GO:0042147: retrograde transport, endosome to Golgi | 5.62E-03 |
| 53 | GO:0008380: RNA splicing | 5.68E-03 |
| 54 | GO:0008033: tRNA processing | 5.93E-03 |
| 55 | GO:0010197: polar nucleus fusion | 6.24E-03 |
| 56 | GO:0009741: response to brassinosteroid | 6.24E-03 |
| 57 | GO:0006623: protein targeting to vacuole | 6.89E-03 |
| 58 | GO:0006891: intra-Golgi vesicle-mediated transport | 7.22E-03 |
| 59 | GO:0042254: ribosome biogenesis | 7.50E-03 |
| 60 | GO:0009793: embryo development ending in seed dormancy | 8.20E-03 |
| 61 | GO:0000910: cytokinesis | 8.97E-03 |
| 62 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.05E-02 |
| 63 | GO:0015031: protein transport | 1.48E-02 |
| 64 | GO:0051707: response to other organism | 1.59E-02 |
| 65 | GO:0006364: rRNA processing | 1.97E-02 |
| 66 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.01E-02 |
| 67 | GO:0006096: glycolytic process | 2.21E-02 |
| 68 | GO:0009416: response to light stimulus | 2.40E-02 |
| 69 | GO:0006457: protein folding | 3.11E-02 |
| 70 | GO:0016036: cellular response to phosphate starvation | 3.55E-02 |
| 71 | GO:0040008: regulation of growth | 3.61E-02 |
| 72 | GO:0009451: RNA modification | 3.79E-02 |
| 73 | GO:0006508: proteolysis | 4.45E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 4 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 5 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 3.20E-08 |
| 7 | GO:0070402: NADPH binding | 1.08E-06 |
| 8 | GO:0004832: valine-tRNA ligase activity | 7.07E-05 |
| 9 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 7.07E-05 |
| 10 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 7.07E-05 |
| 11 | GO:0004560: alpha-L-fucosidase activity | 7.07E-05 |
| 12 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 7.07E-05 |
| 13 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 1.70E-04 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.70E-04 |
| 15 | GO:0004817: cysteine-tRNA ligase activity | 1.70E-04 |
| 16 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.70E-04 |
| 17 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.70E-04 |
| 18 | GO:0004148: dihydrolipoyl dehydrogenase activity | 2.86E-04 |
| 19 | GO:0003727: single-stranded RNA binding | 3.21E-04 |
| 20 | GO:0016851: magnesium chelatase activity | 4.15E-04 |
| 21 | GO:0016149: translation release factor activity, codon specific | 4.15E-04 |
| 22 | GO:0008097: 5S rRNA binding | 4.15E-04 |
| 23 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.15E-04 |
| 24 | GO:0016279: protein-lysine N-methyltransferase activity | 5.53E-04 |
| 25 | GO:0004845: uracil phosphoribosyltransferase activity | 5.53E-04 |
| 26 | GO:0004040: amidase activity | 7.00E-04 |
| 27 | GO:0004849: uridine kinase activity | 1.02E-03 |
| 28 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.02E-03 |
| 29 | GO:0016831: carboxy-lyase activity | 1.19E-03 |
| 30 | GO:0004033: aldo-keto reductase (NADP) activity | 1.37E-03 |
| 31 | GO:0003735: structural constituent of ribosome | 1.56E-03 |
| 32 | GO:0005525: GTP binding | 1.68E-03 |
| 33 | GO:0003747: translation release factor activity | 1.76E-03 |
| 34 | GO:0003690: double-stranded DNA binding | 2.03E-03 |
| 35 | GO:0031072: heat shock protein binding | 2.88E-03 |
| 36 | GO:0004176: ATP-dependent peptidase activity | 4.44E-03 |
| 37 | GO:0003723: RNA binding | 5.34E-03 |
| 38 | GO:0004812: aminoacyl-tRNA ligase activity | 5.62E-03 |
| 39 | GO:0003713: transcription coactivator activity | 6.24E-03 |
| 40 | GO:0000287: magnesium ion binding | 7.22E-03 |
| 41 | GO:0008237: metallopeptidase activity | 8.61E-03 |
| 42 | GO:0052689: carboxylic ester hydrolase activity | 1.01E-02 |
| 43 | GO:0008236: serine-type peptidase activity | 1.09E-02 |
| 44 | GO:0003924: GTPase activity | 1.35E-02 |
| 45 | GO:0000149: SNARE binding | 1.41E-02 |
| 46 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.46E-02 |
| 47 | GO:0005484: SNAP receptor activity | 1.59E-02 |
| 48 | GO:0004185: serine-type carboxypeptidase activity | 1.59E-02 |
| 49 | GO:0043621: protein self-association | 1.68E-02 |
| 50 | GO:0005198: structural molecule activity | 1.73E-02 |
| 51 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.77E-02 |
| 52 | GO:0051082: unfolded protein binding | 2.53E-02 |
| 53 | GO:0008565: protein transporter activity | 3.37E-02 |
| 54 | GO:0042802: identical protein binding | 4.42E-02 |
| 55 | GO:0008168: methyltransferase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.19E-36 |
| 2 | GO:0009570: chloroplast stroma | 3.85E-23 |
| 3 | GO:0009941: chloroplast envelope | 9.19E-13 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.20E-06 |
| 5 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 7.07E-05 |
| 6 | GO:0005840: ribosome | 8.31E-05 |
| 7 | GO:0009508: plastid chromosome | 1.23E-04 |
| 8 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.70E-04 |
| 9 | GO:0009534: chloroplast thylakoid | 1.76E-04 |
| 10 | GO:0042651: thylakoid membrane | 2.22E-04 |
| 11 | GO:0009654: photosystem II oxygen evolving complex | 2.22E-04 |
| 12 | GO:0009543: chloroplast thylakoid lumen | 3.93E-04 |
| 13 | GO:0009526: plastid envelope | 5.53E-04 |
| 14 | GO:0009295: nucleoid | 6.38E-04 |
| 15 | GO:0009536: plastid | 6.71E-04 |
| 16 | GO:0055035: plastid thylakoid membrane | 7.00E-04 |
| 17 | GO:0009579: thylakoid | 1.04E-03 |
| 18 | GO:0012507: ER to Golgi transport vesicle membrane | 1.37E-03 |
| 19 | GO:0009539: photosystem II reaction center | 1.56E-03 |
| 20 | GO:0005763: mitochondrial small ribosomal subunit | 1.76E-03 |
| 21 | GO:0000311: plastid large ribosomal subunit | 2.64E-03 |
| 22 | GO:0032040: small-subunit processome | 2.64E-03 |
| 23 | GO:0009532: plastid stroma | 4.44E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 6.89E-03 |
| 25 | GO:0009504: cell plate | 6.89E-03 |
| 26 | GO:0031969: chloroplast membrane | 9.13E-03 |
| 27 | GO:0009707: chloroplast outer membrane | 1.13E-02 |
| 28 | GO:0031902: late endosome membrane | 1.50E-02 |
| 29 | GO:0031977: thylakoid lumen | 1.50E-02 |
| 30 | GO:0031201: SNARE complex | 1.50E-02 |
| 31 | GO:0009706: chloroplast inner membrane | 2.53E-02 |
| 32 | GO:0046658: anchored component of plasma membrane | 4.55E-02 |