Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G51820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0019323: pentose catabolic process0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0046322: negative regulation of fatty acid oxidation0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0099131: ATP hydrolysis coupled ion transmembrane transport0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0018023: peptidyl-lysine trimethylation0.00E+00
15GO:0042493: response to drug0.00E+00
16GO:0015979: photosynthesis2.63E-08
17GO:0015995: chlorophyll biosynthetic process3.06E-08
18GO:0009658: chloroplast organization7.34E-07
19GO:0042254: ribosome biogenesis7.95E-07
20GO:0006412: translation1.55E-06
21GO:0006633: fatty acid biosynthetic process1.23E-05
22GO:0006353: DNA-templated transcription, termination1.89E-05
23GO:0032544: plastid translation2.69E-05
24GO:0009052: pentose-phosphate shunt, non-oxidative branch6.06E-05
25GO:0010207: photosystem II assembly1.43E-04
26GO:0016123: xanthophyll biosynthetic process1.64E-04
27GO:0006655: phosphatidylglycerol biosynthetic process2.34E-04
28GO:0009735: response to cytokinin2.40E-04
29GO:0034337: RNA folding4.26E-04
30GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.26E-04
31GO:0009443: pyridoxal 5'-phosphate salvage4.26E-04
32GO:0005980: glycogen catabolic process4.26E-04
33GO:0044262: cellular carbohydrate metabolic process4.26E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process4.26E-04
35GO:1904964: positive regulation of phytol biosynthetic process4.26E-04
36GO:0006551: leucine metabolic process4.26E-04
37GO:0042371: vitamin K biosynthetic process4.26E-04
38GO:0043686: co-translational protein modification4.26E-04
39GO:0016117: carotenoid biosynthetic process4.73E-04
40GO:0048564: photosystem I assembly5.08E-04
41GO:0042255: ribosome assembly5.08E-04
42GO:0000413: protein peptidyl-prolyl isomerization5.23E-04
43GO:0071258: cellular response to gravity9.21E-04
44GO:0008616: queuosine biosynthetic process9.21E-04
45GO:0010275: NAD(P)H dehydrogenase complex assembly9.21E-04
46GO:0046741: transport of virus in host, tissue to tissue9.21E-04
47GO:1902326: positive regulation of chlorophyll biosynthetic process9.21E-04
48GO:0018026: peptidyl-lysine monomethylation9.21E-04
49GO:0010027: thylakoid membrane organization1.20E-03
50GO:0016024: CDP-diacylglycerol biosynthetic process1.34E-03
51GO:0010411: xyloglucan metabolic process1.47E-03
52GO:2001295: malonyl-CoA biosynthetic process1.50E-03
53GO:0090391: granum assembly1.50E-03
54GO:0006518: peptide metabolic process1.50E-03
55GO:1901562: response to paraquat1.50E-03
56GO:0045493: xylan catabolic process1.50E-03
57GO:0009767: photosynthetic electron transport chain1.52E-03
58GO:0009817: defense response to fungus, incompatible interaction1.67E-03
59GO:0010020: chloroplast fission1.72E-03
60GO:0009102: biotin biosynthetic process2.17E-03
61GO:0009152: purine ribonucleotide biosynthetic process2.17E-03
62GO:0046653: tetrahydrofolate metabolic process2.17E-03
63GO:0009650: UV protection2.17E-03
64GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.17E-03
65GO:0006424: glutamyl-tRNA aminoacylation2.17E-03
66GO:0050482: arachidonic acid secretion2.17E-03
67GO:0043572: plastid fission2.17E-03
68GO:0055070: copper ion homeostasis2.17E-03
69GO:2001141: regulation of RNA biosynthetic process2.17E-03
70GO:0007017: microtubule-based process2.63E-03
71GO:0030001: metal ion transport2.68E-03
72GO:0015976: carbon utilization2.91E-03
73GO:0019464: glycine decarboxylation via glycine cleavage system2.91E-03
74GO:0009765: photosynthesis, light harvesting2.91E-03
75GO:2000122: negative regulation of stomatal complex development2.91E-03
76GO:0006546: glycine catabolic process2.91E-03
77GO:0010037: response to carbon dioxide2.91E-03
78GO:0045454: cell redox homeostasis3.03E-03
79GO:0031365: N-terminal protein amino acid modification3.73E-03
80GO:0035434: copper ion transmembrane transport3.73E-03
81GO:0000304: response to singlet oxygen3.73E-03
82GO:0034052: positive regulation of plant-type hypersensitive response3.73E-03
83GO:0016120: carotene biosynthetic process3.73E-03
84GO:0032543: mitochondrial translation3.73E-03
85GO:0010236: plastoquinone biosynthetic process3.73E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.61E-03
87GO:0010190: cytochrome b6f complex assembly4.61E-03
88GO:0033365: protein localization to organelle4.61E-03
89GO:0032973: amino acid export4.61E-03
90GO:0009117: nucleotide metabolic process4.61E-03
91GO:0006014: D-ribose metabolic process4.61E-03
92GO:0019252: starch biosynthetic process5.47E-03
93GO:0010555: response to mannitol5.57E-03
94GO:0071470: cellular response to osmotic stress5.57E-03
95GO:0042372: phylloquinone biosynthetic process5.57E-03
96GO:0009612: response to mechanical stimulus5.57E-03
97GO:0009082: branched-chain amino acid biosynthetic process5.57E-03
98GO:1901259: chloroplast rRNA processing5.57E-03
99GO:0009099: valine biosynthetic process5.57E-03
100GO:0032502: developmental process6.26E-03
101GO:0009772: photosynthetic electron transport in photosystem II6.58E-03
102GO:0043090: amino acid import6.58E-03
103GO:0010196: nonphotochemical quenching6.58E-03
104GO:0009645: response to low light intensity stimulus6.58E-03
105GO:0006400: tRNA modification6.58E-03
106GO:0006644: phospholipid metabolic process7.65E-03
107GO:0009642: response to light intensity7.65E-03
108GO:0043068: positive regulation of programmed cell death7.65E-03
109GO:0017004: cytochrome complex assembly8.79E-03
110GO:0071482: cellular response to light stimulus8.79E-03
111GO:0009097: isoleucine biosynthetic process8.79E-03
112GO:0006526: arginine biosynthetic process8.79E-03
113GO:0042128: nitrate assimilation9.49E-03
114GO:0080144: amino acid homeostasis9.98E-03
115GO:0006783: heme biosynthetic process9.98E-03
116GO:0006754: ATP biosynthetic process9.98E-03
117GO:0018298: protein-chromophore linkage1.11E-02
118GO:0005982: starch metabolic process1.12E-02
119GO:0042761: very long-chain fatty acid biosynthetic process1.12E-02
120GO:0009790: embryo development1.17E-02
121GO:0006782: protoporphyrinogen IX biosynthetic process1.25E-02
122GO:0043069: negative regulation of programmed cell death1.25E-02
123GO:0007568: aging1.29E-02
124GO:0009684: indoleacetic acid biosynthetic process1.39E-02
125GO:0019684: photosynthesis, light reaction1.39E-02
126GO:0009773: photosynthetic electron transport in photosystem I1.39E-02
127GO:0006415: translational termination1.39E-02
128GO:0006352: DNA-templated transcription, initiation1.39E-02
129GO:0018119: peptidyl-cysteine S-nitrosylation1.39E-02
130GO:0009637: response to blue light1.41E-02
131GO:0042742: defense response to bacterium1.45E-02
132GO:0034599: cellular response to oxidative stress1.48E-02
133GO:0005983: starch catabolic process1.53E-02
134GO:0010114: response to red light1.82E-02
135GO:0009266: response to temperature stimulus1.82E-02
136GO:0006457: protein folding1.86E-02
137GO:0042546: cell wall biogenesis1.90E-02
138GO:0010167: response to nitrate1.98E-02
139GO:0006636: unsaturated fatty acid biosynthetic process2.14E-02
140GO:0019344: cysteine biosynthetic process2.30E-02
141GO:0000027: ribosomal large subunit assembly2.30E-02
142GO:0051017: actin filament bundle assembly2.30E-02
143GO:0016575: histone deacetylation2.47E-02
144GO:0009768: photosynthesis, light harvesting in photosystem I2.47E-02
145GO:0009409: response to cold2.57E-02
146GO:0048511: rhythmic process2.64E-02
147GO:0010431: seed maturation2.64E-02
148GO:0061077: chaperone-mediated protein folding2.64E-02
149GO:0031408: oxylipin biosynthetic process2.64E-02
150GO:0031348: negative regulation of defense response2.82E-02
151GO:0009814: defense response, incompatible interaction2.82E-02
152GO:0006012: galactose metabolic process3.00E-02
153GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.00E-02
154GO:0009411: response to UV3.00E-02
155GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.37E-02
156GO:0009624: response to nematode3.50E-02
157GO:0000226: microtubule cytoskeleton organization3.56E-02
158GO:0008033: tRNA processing3.56E-02
159GO:0055114: oxidation-reduction process3.59E-02
160GO:0009742: brassinosteroid mediated signaling pathway3.71E-02
161GO:0006520: cellular amino acid metabolic process3.75E-02
162GO:0042752: regulation of circadian rhythm3.95E-02
163GO:0000302: response to reactive oxygen species4.36E-02
164GO:0002229: defense response to oomycetes4.36E-02
165GO:0006869: lipid transport4.59E-02
166GO:1901657: glycosyl compound metabolic process4.78E-02
167GO:0009828: plant-type cell wall loosening4.99E-02
RankGO TermAdjusted P value
1GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
2GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
11GO:0043864: indoleacetamide hydrolase activity0.00E+00
12GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
13GO:0051721: protein phosphatase 2A binding0.00E+00
14GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
15GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
16GO:0042903: tubulin deacetylase activity0.00E+00
17GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
18GO:0045435: lycopene epsilon cyclase activity0.00E+00
19GO:0043014: alpha-tubulin binding0.00E+00
20GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
21GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
22GO:0019843: rRNA binding1.12E-13
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.48E-10
24GO:0003735: structural constituent of ribosome4.77E-08
25GO:0051920: peroxiredoxin activity7.79E-08
26GO:0016209: antioxidant activity2.75E-07
27GO:0005528: FK506 binding3.31E-07
28GO:0016851: magnesium chelatase activity3.78E-07
29GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.09E-06
30GO:0008200: ion channel inhibitor activity2.34E-04
31GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.26E-04
32GO:0004560: alpha-L-fucosidase activity4.26E-04
33GO:0008184: glycogen phosphorylase activity4.26E-04
34GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.26E-04
35GO:0080132: fatty acid alpha-hydroxylase activity4.26E-04
36GO:0004645: phosphorylase activity4.26E-04
37GO:0003984: acetolactate synthase activity4.26E-04
38GO:0004853: uroporphyrinogen decarboxylase activity4.26E-04
39GO:0042586: peptide deformylase activity4.26E-04
40GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.26E-04
41GO:0004033: aldo-keto reductase (NADP) activity5.08E-04
42GO:0033201: alpha-1,4-glucan synthase activity9.21E-04
43GO:0004750: ribulose-phosphate 3-epimerase activity9.21E-04
44GO:0008479: queuine tRNA-ribosyltransferase activity9.21E-04
45GO:0016630: protochlorophyllide reductase activity9.21E-04
46GO:0008237: metallopeptidase activity1.03E-03
47GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.50E-03
48GO:0070402: NADPH binding1.50E-03
49GO:0008864: formyltetrahydrofolate deformylase activity1.50E-03
50GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.50E-03
51GO:0004324: ferredoxin-NADP+ reductase activity1.50E-03
52GO:0016531: copper chaperone activity1.50E-03
53GO:0004373: glycogen (starch) synthase activity1.50E-03
54GO:0019829: cation-transporting ATPase activity1.50E-03
55GO:0004148: dihydrolipoyl dehydrogenase activity1.50E-03
56GO:0004075: biotin carboxylase activity1.50E-03
57GO:0004751: ribose-5-phosphate isomerase activity1.50E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.50E-03
59GO:0004601: peroxidase activity1.51E-03
60GO:0004222: metalloendopeptidase activity1.90E-03
61GO:0043023: ribosomal large subunit binding2.17E-03
62GO:0008097: 5S rRNA binding2.17E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity2.17E-03
64GO:0035529: NADH pyrophosphatase activity2.17E-03
65GO:0048487: beta-tubulin binding2.17E-03
66GO:0016149: translation release factor activity, codon specific2.17E-03
67GO:0051539: 4 iron, 4 sulfur cluster binding2.68E-03
68GO:0004176: ATP-dependent peptidase activity2.89E-03
69GO:0004659: prenyltransferase activity2.91E-03
70GO:0016279: protein-lysine N-methyltransferase activity2.91E-03
71GO:0001053: plastid sigma factor activity2.91E-03
72GO:0016836: hydro-lyase activity2.91E-03
73GO:0016987: sigma factor activity2.91E-03
74GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.91E-03
75GO:0009011: starch synthase activity2.91E-03
76GO:0009044: xylan 1,4-beta-xylosidase activity2.91E-03
77GO:0043495: protein anchor2.91E-03
78GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.91E-03
79GO:0046556: alpha-L-arabinofuranosidase activity2.91E-03
80GO:0016491: oxidoreductase activity3.30E-03
81GO:0003989: acetyl-CoA carboxylase activity3.73E-03
82GO:0003959: NADPH dehydrogenase activity3.73E-03
83GO:0004623: phospholipase A2 activity3.73E-03
84GO:0004040: amidase activity3.73E-03
85GO:0003727: single-stranded RNA binding3.75E-03
86GO:0005509: calcium ion binding4.25E-03
87GO:0080030: methyl indole-3-acetate esterase activity4.61E-03
88GO:0004130: cytochrome-c peroxidase activity4.61E-03
89GO:0016462: pyrophosphatase activity4.61E-03
90GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.61E-03
91GO:0003690: double-stranded DNA binding4.79E-03
92GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.57E-03
93GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.57E-03
94GO:0004747: ribokinase activity5.57E-03
95GO:0016762: xyloglucan:xyloglucosyl transferase activity5.86E-03
96GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.31E-03
97GO:0016788: hydrolase activity, acting on ester bonds6.49E-03
98GO:0019899: enzyme binding6.58E-03
99GO:0043295: glutathione binding6.58E-03
100GO:0005200: structural constituent of cytoskeleton7.55E-03
101GO:0004034: aldose 1-epimerase activity7.65E-03
102GO:0008865: fructokinase activity7.65E-03
103GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.79E-03
104GO:0005375: copper ion transmembrane transporter activity8.79E-03
105GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.79E-03
106GO:0016168: chlorophyll binding8.98E-03
107GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism9.98E-03
108GO:0003747: translation release factor activity9.98E-03
109GO:0016798: hydrolase activity, acting on glycosyl bonds1.00E-02
110GO:0047372: acylglycerol lipase activity1.39E-02
111GO:0008378: galactosyltransferase activity1.53E-02
112GO:0004089: carbonate dehydratase activity1.67E-02
113GO:0015266: protein channel activity1.67E-02
114GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.67E-02
115GO:0008266: poly(U) RNA binding1.82E-02
116GO:0051537: 2 iron, 2 sulfur cluster binding1.97E-02
117GO:0043621: protein self-association1.97E-02
118GO:0005198: structural molecule activity2.05E-02
119GO:0031409: pigment binding2.14E-02
120GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.14E-02
121GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.14E-02
122GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.14E-02
123GO:0004407: histone deacetylase activity2.30E-02
124GO:0043424: protein histidine kinase binding2.47E-02
125GO:0008324: cation transmembrane transporter activity2.47E-02
126GO:0008289: lipid binding2.58E-02
127GO:0022891: substrate-specific transmembrane transporter activity3.00E-02
128GO:0030570: pectate lyase activity3.00E-02
129GO:0000166: nucleotide binding3.68E-02
130GO:0052689: carboxylic ester hydrolase activity3.72E-02
131GO:0016853: isomerase activity3.95E-02
132GO:0019901: protein kinase binding4.15E-02
133GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.49E-02
134GO:0051015: actin filament binding4.78E-02
RankGO TermAdjusted P value
1GO:0005948: acetolactate synthase complex0.00E+00
2GO:0005835: fatty acid synthase complex0.00E+00
3GO:0009507: chloroplast1.68E-72
4GO:0009570: chloroplast stroma1.45E-46
5GO:0009941: chloroplast envelope2.75E-39
6GO:0009535: chloroplast thylakoid membrane1.14E-26
7GO:0009543: chloroplast thylakoid lumen1.52E-24
8GO:0009579: thylakoid9.74E-23
9GO:0031977: thylakoid lumen9.78E-22
10GO:0009534: chloroplast thylakoid2.11E-21
11GO:0009654: photosystem II oxygen evolving complex9.22E-09
12GO:0005840: ribosome3.10E-08
13GO:0010007: magnesium chelatase complex7.87E-08
14GO:0019898: extrinsic component of membrane1.14E-07
15GO:0048046: apoplast5.86E-07
16GO:0009536: plastid1.96E-05
17GO:0031969: chloroplast membrane1.10E-04
18GO:0042651: thylakoid membrane2.63E-04
19GO:0009533: chloroplast stromal thylakoid4.06E-04
20GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.26E-04
21GO:0009515: granal stacked thylakoid4.26E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]4.26E-04
23GO:0005618: cell wall5.85E-04
24GO:0045298: tubulin complex7.43E-04
25GO:0043036: starch grain9.21E-04
26GO:0010319: stromule1.03E-03
27GO:0000311: plastid large ribosomal subunit1.34E-03
28GO:0009706: chloroplast inner membrane1.40E-03
29GO:0030095: chloroplast photosystem II1.72E-03
30GO:0005960: glycine cleavage complex2.17E-03
31GO:0016020: membrane4.09E-03
32GO:0009501: amyloplast7.65E-03
33GO:0009505: plant-type cell wall8.24E-03
34GO:0010287: plastoglobule8.96E-03
35GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)9.98E-03
36GO:0009707: chloroplast outer membrane1.11E-02
37GO:0032040: small-subunit processome1.53E-02
38GO:0009508: plastid chromosome1.67E-02
39GO:0030076: light-harvesting complex1.98E-02
40GO:0043234: protein complex2.14E-02
41GO:0015935: small ribosomal subunit2.64E-02
42GO:0009532: plastid stroma2.64E-02
43GO:0031410: cytoplasmic vesicle2.82E-02
44GO:0015629: actin cytoskeleton3.00E-02
45GO:0005874: microtubule3.15E-02
46GO:0005744: mitochondrial inner membrane presequence translocase complex3.18E-02
47GO:0022626: cytosolic ribosome3.45E-02
48GO:0009522: photosystem I3.95E-02
49GO:0009523: photosystem II4.15E-02
<
Gene type



Gene DE type