GO Enrichment Analysis of Co-expressed Genes with
AT5G50280
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 7 | GO:0060416: response to growth hormone | 0.00E+00 |
| 8 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 9 | GO:0032544: plastid translation | 2.43E-09 |
| 10 | GO:0032543: mitochondrial translation | 1.12E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 2.44E-05 |
| 12 | GO:0042372: phylloquinone biosynthetic process | 2.44E-05 |
| 13 | GO:0006353: DNA-templated transcription, termination | 4.35E-05 |
| 14 | GO:0034337: RNA folding | 8.43E-05 |
| 15 | GO:0006438: valyl-tRNA aminoacylation | 8.43E-05 |
| 16 | GO:0009443: pyridoxal 5'-phosphate salvage | 8.43E-05 |
| 17 | GO:1903409: reactive oxygen species biosynthetic process | 8.43E-05 |
| 18 | GO:0042371: vitamin K biosynthetic process | 8.43E-05 |
| 19 | GO:0043007: maintenance of rDNA | 8.43E-05 |
| 20 | GO:0045717: negative regulation of fatty acid biosynthetic process | 2.00E-04 |
| 21 | GO:0018026: peptidyl-lysine monomethylation | 2.00E-04 |
| 22 | GO:0080148: negative regulation of response to water deprivation | 2.00E-04 |
| 23 | GO:0006418: tRNA aminoacylation for protein translation | 2.83E-04 |
| 24 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 3.35E-04 |
| 25 | GO:0006954: inflammatory response | 3.35E-04 |
| 26 | GO:0006518: peptide metabolic process | 3.35E-04 |
| 27 | GO:0010239: chloroplast mRNA processing | 4.84E-04 |
| 28 | GO:0016556: mRNA modification | 4.84E-04 |
| 29 | GO:0006424: glutamyl-tRNA aminoacylation | 4.84E-04 |
| 30 | GO:0046739: transport of virus in multicellular host | 4.84E-04 |
| 31 | GO:0006749: glutathione metabolic process | 6.44E-04 |
| 32 | GO:0006808: regulation of nitrogen utilization | 6.44E-04 |
| 33 | GO:0000304: response to singlet oxygen | 8.14E-04 |
| 34 | GO:0006564: L-serine biosynthetic process | 8.14E-04 |
| 35 | GO:0010236: plastoquinone biosynthetic process | 8.14E-04 |
| 36 | GO:0045038: protein import into chloroplast thylakoid membrane | 8.14E-04 |
| 37 | GO:0010027: thylakoid membrane organization | 8.91E-04 |
| 38 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9.94E-04 |
| 39 | GO:0016554: cytidine to uridine editing | 9.94E-04 |
| 40 | GO:0042793: transcription from plastid promoter | 9.94E-04 |
| 41 | GO:0010190: cytochrome b6f complex assembly | 9.94E-04 |
| 42 | GO:0015995: chlorophyll biosynthetic process | 1.04E-03 |
| 43 | GO:0006412: translation | 1.14E-03 |
| 44 | GO:0030488: tRNA methylation | 1.18E-03 |
| 45 | GO:0009658: chloroplast organization | 1.36E-03 |
| 46 | GO:0009772: photosynthetic electron transport in photosystem II | 1.39E-03 |
| 47 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.39E-03 |
| 48 | GO:0006821: chloride transport | 1.39E-03 |
| 49 | GO:0016559: peroxisome fission | 1.60E-03 |
| 50 | GO:0048564: photosystem I assembly | 1.60E-03 |
| 51 | GO:0045292: mRNA cis splicing, via spliceosome | 1.60E-03 |
| 52 | GO:0042255: ribosome assembly | 1.60E-03 |
| 53 | GO:0009704: de-etiolation | 1.60E-03 |
| 54 | GO:0010497: plasmodesmata-mediated intercellular transport | 1.83E-03 |
| 55 | GO:0017004: cytochrome complex assembly | 1.83E-03 |
| 56 | GO:0000373: Group II intron splicing | 2.06E-03 |
| 57 | GO:1900865: chloroplast RNA modification | 2.30E-03 |
| 58 | GO:0009773: photosynthetic electron transport in photosystem I | 2.82E-03 |
| 59 | GO:0006415: translational termination | 2.82E-03 |
| 60 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.82E-03 |
| 61 | GO:0009073: aromatic amino acid family biosynthetic process | 2.82E-03 |
| 62 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.82E-03 |
| 63 | GO:0010628: positive regulation of gene expression | 3.37E-03 |
| 64 | GO:0010020: chloroplast fission | 3.66E-03 |
| 65 | GO:0031408: oxylipin biosynthetic process | 5.22E-03 |
| 66 | GO:0016114: terpenoid biosynthetic process | 5.22E-03 |
| 67 | GO:0016998: cell wall macromolecule catabolic process | 5.22E-03 |
| 68 | GO:0016226: iron-sulfur cluster assembly | 5.55E-03 |
| 69 | GO:0040008: regulation of growth | 5.74E-03 |
| 70 | GO:0008033: tRNA processing | 6.97E-03 |
| 71 | GO:0006814: sodium ion transport | 7.72E-03 |
| 72 | GO:0032502: developmental process | 8.90E-03 |
| 73 | GO:0042254: ribosome biogenesis | 9.48E-03 |
| 74 | GO:0010411: xyloglucan metabolic process | 1.23E-02 |
| 75 | GO:0015979: photosynthesis | 1.32E-02 |
| 76 | GO:0045454: cell redox homeostasis | 1.38E-02 |
| 77 | GO:0009407: toxin catabolic process | 1.42E-02 |
| 78 | GO:0048527: lateral root development | 1.47E-02 |
| 79 | GO:0051707: response to other organism | 1.88E-02 |
| 80 | GO:0042546: cell wall biogenesis | 1.93E-02 |
| 81 | GO:0009636: response to toxic substance | 2.04E-02 |
| 82 | GO:0006813: potassium ion transport | 2.32E-02 |
| 83 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.38E-02 |
| 84 | GO:0006096: glycolytic process | 2.62E-02 |
| 85 | GO:0009793: embryo development ending in seed dormancy | 4.19E-02 |
| 86 | GO:0007623: circadian rhythm | 4.40E-02 |
| 87 | GO:0009451: RNA modification | 4.47E-02 |
| 88 | GO:0006470: protein dephosphorylation | 4.84E-02 |
| 89 | GO:0010468: regulation of gene expression | 4.99E-02 |
| 90 | GO:0008380: RNA splicing | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005048: signal sequence binding | 0.00E+00 |
| 2 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 3 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 4 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 5 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 6 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 7 | GO:0019843: rRNA binding | 6.76E-08 |
| 8 | GO:0070402: NADPH binding | 1.47E-06 |
| 9 | GO:0051920: peroxiredoxin activity | 2.44E-05 |
| 10 | GO:0016209: antioxidant activity | 4.35E-05 |
| 11 | GO:0004033: aldo-keto reductase (NADP) activity | 4.35E-05 |
| 12 | GO:0004560: alpha-L-fucosidase activity | 8.43E-05 |
| 13 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 8.43E-05 |
| 14 | GO:0001530: lipopolysaccharide binding | 8.43E-05 |
| 15 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 8.43E-05 |
| 16 | GO:0004832: valine-tRNA ligase activity | 8.43E-05 |
| 17 | GO:0004328: formamidase activity | 8.43E-05 |
| 18 | GO:0003735: structural constituent of ribosome | 1.20E-04 |
| 19 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.00E-04 |
| 20 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.00E-04 |
| 21 | GO:0051536: iron-sulfur cluster binding | 2.55E-04 |
| 22 | GO:0017150: tRNA dihydrouridine synthase activity | 3.35E-04 |
| 23 | GO:0002161: aminoacyl-tRNA editing activity | 3.35E-04 |
| 24 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.35E-04 |
| 25 | GO:0004812: aminoacyl-tRNA ligase activity | 4.38E-04 |
| 26 | GO:0008508: bile acid:sodium symporter activity | 4.84E-04 |
| 27 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.84E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 4.84E-04 |
| 29 | GO:0016149: translation release factor activity, codon specific | 4.84E-04 |
| 30 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 4.84E-04 |
| 31 | GO:0008097: 5S rRNA binding | 4.84E-04 |
| 32 | GO:0004659: prenyltransferase activity | 6.44E-04 |
| 33 | GO:0016279: protein-lysine N-methyltransferase activity | 6.44E-04 |
| 34 | GO:0080030: methyl indole-3-acetate esterase activity | 9.94E-04 |
| 35 | GO:0016208: AMP binding | 9.94E-04 |
| 36 | GO:0005247: voltage-gated chloride channel activity | 9.94E-04 |
| 37 | GO:0008312: 7S RNA binding | 1.60E-03 |
| 38 | GO:0003747: translation release factor activity | 2.06E-03 |
| 39 | GO:0004519: endonuclease activity | 3.23E-03 |
| 40 | GO:0031072: heat shock protein binding | 3.37E-03 |
| 41 | GO:0008324: cation transmembrane transporter activity | 4.89E-03 |
| 42 | GO:0003727: single-stranded RNA binding | 6.24E-03 |
| 43 | GO:0008080: N-acetyltransferase activity | 7.34E-03 |
| 44 | GO:0003713: transcription coactivator activity | 7.34E-03 |
| 45 | GO:0019901: protein kinase binding | 8.10E-03 |
| 46 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 8.50E-03 |
| 47 | GO:0003723: RNA binding | 8.52E-03 |
| 48 | GO:0004601: peroxidase activity | 9.31E-03 |
| 49 | GO:0016788: hydrolase activity, acting on ester bonds | 9.48E-03 |
| 50 | GO:0016597: amino acid binding | 1.06E-02 |
| 51 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.23E-02 |
| 52 | GO:0008236: serine-type peptidase activity | 1.28E-02 |
| 53 | GO:0004222: metalloendopeptidase activity | 1.42E-02 |
| 54 | GO:0003924: GTPase activity | 1.71E-02 |
| 55 | GO:0004364: glutathione transferase activity | 1.83E-02 |
| 56 | GO:0004185: serine-type carboxypeptidase activity | 1.88E-02 |
| 57 | GO:0043621: protein self-association | 1.99E-02 |
| 58 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.10E-02 |
| 59 | GO:0051287: NAD binding | 2.15E-02 |
| 60 | GO:0003690: double-stranded DNA binding | 2.38E-02 |
| 61 | GO:0003729: mRNA binding | 2.43E-02 |
| 62 | GO:0051082: unfolded protein binding | 2.98E-02 |
| 63 | GO:0008017: microtubule binding | 4.55E-02 |
| 64 | GO:0005525: GTP binding | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.66E-31 |
| 2 | GO:0009570: chloroplast stroma | 7.03E-18 |
| 3 | GO:0009941: chloroplast envelope | 2.72E-14 |
| 4 | GO:0005840: ribosome | 1.94E-05 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 2.65E-05 |
| 6 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 8.43E-05 |
| 7 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.00E-04 |
| 8 | GO:0080085: signal recognition particle, chloroplast targeting | 2.00E-04 |
| 9 | GO:0009534: chloroplast thylakoid | 2.80E-04 |
| 10 | GO:0010007: magnesium chelatase complex | 3.35E-04 |
| 11 | GO:0034707: chloride channel complex | 9.94E-04 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 1.39E-03 |
| 13 | GO:0031969: chloroplast membrane | 1.78E-03 |
| 14 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.83E-03 |
| 15 | GO:0032040: small-subunit processome | 3.09E-03 |
| 16 | GO:0000311: plastid large ribosomal subunit | 3.09E-03 |
| 17 | GO:0009508: plastid chromosome | 3.37E-03 |
| 18 | GO:0000312: plastid small ribosomal subunit | 3.66E-03 |
| 19 | GO:0043234: protein complex | 4.26E-03 |
| 20 | GO:0009543: chloroplast thylakoid lumen | 4.37E-03 |
| 21 | GO:0009536: plastid | 4.49E-03 |
| 22 | GO:0042651: thylakoid membrane | 4.89E-03 |
| 23 | GO:0009295: nucleoid | 1.01E-02 |
| 24 | GO:0005778: peroxisomal membrane | 1.01E-02 |
| 25 | GO:0009707: chloroplast outer membrane | 1.33E-02 |
| 26 | GO:0015934: large ribosomal subunit | 1.47E-02 |
| 27 | GO:0031977: thylakoid lumen | 1.77E-02 |
| 28 | GO:0043231: intracellular membrane-bounded organelle | 1.89E-02 |
| 29 | GO:0005739: mitochondrion | 3.16E-02 |
| 30 | GO:0010287: plastoglobule | 3.37E-02 |
| 31 | GO:0005777: peroxisome | 3.48E-02 |
| 32 | GO:0009579: thylakoid | 3.63E-02 |
| 33 | GO:0005615: extracellular space | 4.77E-02 |