co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G49460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0042493: response to drug	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
6	GO:0010411: xyloglucan metabolic process	3.74E-06
7	GO:0007017: microtubule-based process	4.31E-06
8	GO:0071555: cell wall organization	1.90E-05
9	GO:0016024: CDP-diacylglycerol biosynthetic process	4.01E-05
10	GO:0016042: lipid catabolic process	5.86E-05
11	GO:0016123: xanthophyll biosynthetic process	8.61E-05
12	GO:0006633: fatty acid biosynthetic process	1.97E-04
13	GO:0042546: cell wall biogenesis	2.17E-04
14	GO:0034220: ion transmembrane transport	2.43E-04
15	GO:0000032: cell wall mannoprotein biosynthetic process	2.87E-04
16	GO:0032025: response to cobalt ion	2.87E-04
17	GO:0010442: guard cell morphogenesis	2.87E-04
18	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.87E-04
19	GO:0071588: hydrogen peroxide mediated signaling pathway	2.87E-04
20	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.87E-04
21	GO:0060627: regulation of vesicle-mediated transport	2.87E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.87E-04
23	GO:0009664: plant-type cell wall organization	2.95E-04
24	GO:0005975: carbohydrate metabolic process	3.47E-04
25	GO:0010583: response to cyclopentenone	3.90E-04
26	GO:0009828: plant-type cell wall loosening	4.60E-04
27	GO:0009826: unidimensional cell growth	5.00E-04
28	GO:0006949: syncytium formation	5.80E-04
29	GO:0010541: acropetal auxin transport	6.30E-04
30	GO:0001736: establishment of planar polarity	6.30E-04
31	GO:0052541: plant-type cell wall cellulose metabolic process	6.30E-04
32	GO:0010198: synergid death	6.30E-04
33	GO:0010015: root morphogenesis	6.69E-04
34	GO:0015995: chlorophyll biosynthetic process	7.09E-04
35	GO:0009834: plant-type secondary cell wall biogenesis	9.10E-04
36	GO:0010143: cutin biosynthetic process	9.74E-04
37	GO:0090391: granum assembly	1.02E-03
38	GO:0010160: formation of animal organ boundary	1.02E-03
39	GO:0045493: xylan catabolic process	1.02E-03
40	GO:2001295: malonyl-CoA biosynthetic process	1.02E-03
41	GO:0033591: response to L-ascorbic acid	1.02E-03
42	GO:0046168: glycerol-3-phosphate catabolic process	1.02E-03
43	GO:0006833: water transport	1.21E-03
44	GO:0006869: lipid transport	1.26E-03
45	GO:0051017: actin filament bundle assembly	1.34E-03
46	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.46E-03
47	GO:0009650: UV protection	1.46E-03
48	GO:0010306: rhamnogalacturonan II biosynthetic process	1.46E-03
49	GO:0010731: protein glutathionylation	1.46E-03
50	GO:0006424: glutamyl-tRNA aminoacylation	1.46E-03
51	GO:0050482: arachidonic acid secretion	1.46E-03
52	GO:0009413: response to flooding	1.46E-03
53	GO:0009298: GDP-mannose biosynthetic process	1.46E-03
54	GO:0007231: osmosensory signaling pathway	1.46E-03
55	GO:0051639: actin filament network formation	1.46E-03
56	GO:0034059: response to anoxia	1.46E-03
57	GO:0080170: hydrogen peroxide transmembrane transport	1.46E-03
58	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.46E-03
59	GO:0006072: glycerol-3-phosphate metabolic process	1.46E-03
60	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.93E-03
61	GO:0030104: water homeostasis	1.96E-03
62	GO:0033500: carbohydrate homeostasis	1.96E-03
63	GO:0009956: radial pattern formation	1.96E-03
64	GO:0051764: actin crosslink formation	1.96E-03
65	GO:0009765: photosynthesis, light harvesting	1.96E-03
66	GO:0006183: GTP biosynthetic process	1.96E-03
67	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.27E-03
68	GO:0042335: cuticle development	2.45E-03
69	GO:0016120: carotene biosynthetic process	2.50E-03
70	GO:0032543: mitochondrial translation	2.50E-03
71	GO:0009958: positive gravitropism	2.64E-03
72	GO:0006655: phosphatidylglycerol biosynthetic process	3.08E-03
73	GO:0060918: auxin transport	3.08E-03
74	GO:0006014: D-ribose metabolic process	3.08E-03
75	GO:0006751: glutathione catabolic process	3.08E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.08E-03
77	GO:0000302: response to reactive oxygen species	3.26E-03
78	GO:0009624: response to nematode	3.40E-03
79	GO:0042372: phylloquinone biosynthetic process	3.71E-03
80	GO:0009612: response to mechanical stimulus	3.71E-03
81	GO:0006694: steroid biosynthetic process	3.71E-03
82	GO:0010019: chloroplast-nucleus signaling pathway	3.71E-03
83	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.75E-03
84	GO:0009645: response to low light intensity stimulus	4.38E-03
85	GO:0010196: nonphotochemical quenching	4.38E-03
86	GO:0010027: thylakoid membrane organization	4.70E-03
87	GO:0045010: actin nucleation	5.08E-03
88	GO:0006644: phospholipid metabolic process	5.08E-03
89	GO:0032544: plastid translation	5.82E-03
90	GO:0009808: lignin metabolic process	5.82E-03
91	GO:0009932: cell tip growth	5.82E-03
92	GO:0016311: dephosphorylation	5.83E-03
93	GO:0006783: heme biosynthetic process	6.60E-03
94	GO:0006754: ATP biosynthetic process	6.60E-03
95	GO:0045490: pectin catabolic process	6.82E-03
96	GO:0007165: signal transduction	6.83E-03
97	GO:0007568: aging	7.10E-03
98	GO:0009638: phototropism	7.41E-03
99	GO:0016051: carbohydrate biosynthetic process	7.78E-03
100	GO:0034599: cellular response to oxidative stress	8.14E-03
101	GO:0006782: protoporphyrinogen IX biosynthetic process	8.26E-03
102	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.26E-03
103	GO:0043069: negative regulation of programmed cell death	8.26E-03
104	GO:0048829: root cap development	8.26E-03
105	GO:0018119: peptidyl-cysteine S-nitrosylation	9.14E-03
106	GO:0048765: root hair cell differentiation	9.14E-03
107	GO:0009684: indoleacetic acid biosynthetic process	9.14E-03
108	GO:0006816: calcium ion transport	9.14E-03
109	GO:0009926: auxin polar transport	1.01E-02
110	GO:0008361: regulation of cell size	1.01E-02
111	GO:0030036: actin cytoskeleton organization	1.10E-02
112	GO:0050826: response to freezing	1.10E-02
113	GO:0009933: meristem structural organization	1.20E-02
114	GO:0010540: basipetal auxin transport	1.20E-02
115	GO:0042254: ribosome biogenesis	1.22E-02
116	GO:0042538: hyperosmotic salinity response	1.26E-02
117	GO:0010030: positive regulation of seed germination	1.30E-02
118	GO:0070588: calcium ion transmembrane transport	1.30E-02
119	GO:0006486: protein glycosylation	1.36E-02
120	GO:0006071: glycerol metabolic process	1.40E-02
121	GO:0010026: trichome differentiation	1.62E-02
122	GO:0019953: sexual reproduction	1.62E-02
123	GO:0003333: amino acid transmembrane transport	1.73E-02
124	GO:0016998: cell wall macromolecule catabolic process	1.73E-02
125	GO:0048511: rhythmic process	1.73E-02
126	GO:0031348: negative regulation of defense response	1.85E-02
127	GO:0030245: cellulose catabolic process	1.85E-02
128	GO:0015979: photosynthesis	1.85E-02
129	GO:0009411: response to UV	1.96E-02
130	GO:0006012: galactose metabolic process	1.96E-02
131	GO:0045454: cell redox homeostasis	1.96E-02
132	GO:0019722: calcium-mediated signaling	2.08E-02
133	GO:0009306: protein secretion	2.08E-02
134	GO:0048443: stamen development	2.08E-02
135	GO:0055085: transmembrane transport	2.19E-02
136	GO:0016117: carotenoid biosynthetic process	2.21E-02
137	GO:0000413: protein peptidyl-prolyl isomerization	2.33E-02
138	GO:0042631: cellular response to water deprivation	2.33E-02
139	GO:0010305: leaf vascular tissue pattern formation	2.46E-02
140	GO:0048868: pollen tube development	2.46E-02
141	GO:0006629: lipid metabolic process	2.56E-02
142	GO:0042752: regulation of circadian rhythm	2.59E-02
143	GO:0019252: starch biosynthetic process	2.72E-02
144	GO:0042744: hydrogen peroxide catabolic process	2.76E-02
145	GO:0071554: cell wall organization or biogenesis	2.86E-02
146	GO:0002229: defense response to oomycetes	2.86E-02
147	GO:0016132: brassinosteroid biosynthetic process	2.86E-02
148	GO:0010090: trichome morphogenesis	3.13E-02
149	GO:0009639: response to red or far red light	3.28E-02
150	GO:0007267: cell-cell signaling	3.42E-02
151	GO:0051607: defense response to virus	3.57E-02
152	GO:0007166: cell surface receptor signaling pathway	3.82E-02
153	GO:0009627: systemic acquired resistance	4.02E-02
154	GO:0042128: nitrate assimilation	4.02E-02
155	GO:0009414: response to water deprivation	4.18E-02
156	GO:0009817: defense response to fungus, incompatible interaction	4.49E-02
157	GO:0009651: response to salt stress	4.56E-02
158	GO:0010311: lateral root formation	4.65E-02
159	GO:0009735: response to cytokinin	4.65E-02
160	GO:0009407: toxin catabolic process	4.81E-02
161	GO:0010218: response to far red light	4.81E-02
162	GO:0048527: lateral root development	4.97E-02
163	GO:0009631: cold acclimation	4.97E-02
164	GO:0010043: response to zinc ion	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
7	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
8	GO:0050614: delta24-sterol reductase activity	0.00E+00
9	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
10	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
11	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.66E-06
12	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.44E-05
13	GO:0052689: carboxylic ester hydrolase activity	2.74E-05
14	GO:0016851: magnesium chelatase activity	3.03E-05
15	GO:0005200: structural constituent of cytoskeleton	4.05E-05
16	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.96E-05
17	GO:0016788: hydrolase activity, acting on ester bonds	9.42E-05
18	GO:0004130: cytochrome-c peroxidase activity	1.25E-04
19	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.25E-04
20	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.27E-04
21	GO:0051920: peroxiredoxin activity	1.71E-04
22	GO:0030570: pectate lyase activity	1.73E-04
23	GO:0016209: antioxidant activity	2.83E-04
24	GO:0004476: mannose-6-phosphate isomerase activity	2.87E-04
25	GO:0004853: uroporphyrinogen decarboxylase activity	2.87E-04
26	GO:0004560: alpha-L-fucosidase activity	2.87E-04
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.87E-04
28	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.87E-04
29	GO:0080132: fatty acid alpha-hydroxylase activity	2.87E-04
30	GO:0015250: water channel activity	5.76E-04
31	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.30E-04
32	GO:0003839: gamma-glutamylcyclotransferase activity	6.30E-04
33	GO:0003938: IMP dehydrogenase activity	6.30E-04
34	GO:0008289: lipid binding	6.99E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.02E-03
36	GO:0004075: biotin carboxylase activity	1.02E-03
37	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.02E-03
38	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.02E-03
39	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.46E-03
40	GO:0043023: ribosomal large subunit binding	1.46E-03
41	GO:0003924: GTPase activity	1.54E-03
42	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.96E-03
43	GO:0009044: xylan 1,4-beta-xylosidase activity	1.96E-03
44	GO:0046556: alpha-L-arabinofuranosidase activity	1.96E-03
45	GO:0010011: auxin binding	1.96E-03
46	GO:0016836: hydro-lyase activity	1.96E-03
47	GO:0010328: auxin influx transmembrane transporter activity	1.96E-03
48	GO:0004623: phospholipase A2 activity	2.50E-03
49	GO:0004040: amidase activity	2.50E-03
50	GO:0003989: acetyl-CoA carboxylase activity	2.50E-03
51	GO:0004650: polygalacturonase activity	3.03E-03
52	GO:0016208: AMP binding	3.08E-03
53	GO:0016688: L-ascorbate peroxidase activity	3.08E-03
54	GO:0008200: ion channel inhibitor activity	3.08E-03
55	GO:0004629: phospholipase C activity	3.08E-03
56	GO:0004017: adenylate kinase activity	3.71E-03
57	GO:0004747: ribokinase activity	3.71E-03
58	GO:0004435: phosphatidylinositol phospholipase C activity	3.71E-03
59	GO:0051015: actin filament binding	3.71E-03
60	GO:0016791: phosphatase activity	3.94E-03
61	GO:0019843: rRNA binding	4.52E-03
62	GO:0016829: lyase activity	5.00E-03
63	GO:0004871: signal transducer activity	5.02E-03
64	GO:0008865: fructokinase activity	5.08E-03
65	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.08E-03
66	GO:0004034: aldose 1-epimerase activity	5.08E-03
67	GO:0005096: GTPase activator activity	6.45E-03
68	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	6.60E-03
69	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.60E-03
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.60E-03
71	GO:0003993: acid phosphatase activity	8.14E-03
72	GO:0015020: glucuronosyltransferase activity	8.26E-03
73	GO:0047372: acylglycerol lipase activity	9.14E-03
74	GO:0004364: glutathione transferase activity	9.65E-03
75	GO:0005525: GTP binding	1.01E-02
76	GO:0008378: galactosyltransferase activity	1.01E-02
77	GO:0004565: beta-galactosidase activity	1.10E-02
78	GO:0010329: auxin efflux transmembrane transporter activity	1.10E-02
79	GO:0005262: calcium channel activity	1.10E-02
80	GO:0015293: symporter activity	1.13E-02
81	GO:0004601: peroxidase activity	1.19E-02
82	GO:0008324: cation transmembrane transporter activity	1.62E-02
83	GO:0008810: cellulase activity	1.96E-02
84	GO:0016746: transferase activity, transferring acyl groups	2.00E-02
85	GO:0003713: transcription coactivator activity	2.46E-02
86	GO:0016853: isomerase activity	2.59E-02
87	GO:0005507: copper ion binding	2.60E-02
88	GO:0005516: calmodulin binding	2.82E-02
89	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.12E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.42E-02
91	GO:0016597: amino acid binding	3.57E-02
92	GO:0016413: O-acetyltransferase activity	3.57E-02
93	GO:0008375: acetylglucosaminyltransferase activity	4.02E-02
94	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.25E-02
95	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.49E-02
96	GO:0003735: structural constituent of ribosome	4.57E-02
97	GO:0030145: manganese ion binding	4.97E-02
98	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009570: chloroplast stroma	6.24E-11
3	GO:0048046: apoplast	1.24E-10
4	GO:0009505: plant-type cell wall	1.91E-10
5	GO:0031225: anchored component of membrane	8.29E-10
6	GO:0046658: anchored component of plasma membrane	1.59E-09
7	GO:0009534: chloroplast thylakoid	1.98E-09
8	GO:0005576: extracellular region	8.48E-09
9	GO:0005618: cell wall	1.32E-08
10	GO:0009507: chloroplast	9.06E-08
11	GO:0005886: plasma membrane	1.02E-07
12	GO:0009579: thylakoid	2.06E-06
13	GO:0016020: membrane	3.31E-06
14	GO:0009543: chloroplast thylakoid lumen	1.21E-05
15	GO:0010007: magnesium chelatase complex	1.35E-05
16	GO:0031977: thylakoid lumen	1.39E-05
17	GO:0045298: tubulin complex	1.42E-05
18	GO:0009535: chloroplast thylakoid membrane	8.80E-05
19	GO:0009941: chloroplast envelope	1.19E-04
20	GO:0009515: granal stacked thylakoid	2.87E-04
21	GO:0043674: columella	2.87E-04
22	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.87E-04
23	GO:0005874: microtubule	7.38E-04
24	GO:0009506: plasmodesma	8.31E-04
25	GO:0005875: microtubule associated complex	1.21E-03
26	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.46E-03
27	GO:0015630: microtubule cytoskeleton	1.46E-03
28	GO:0009531: secondary cell wall	1.46E-03
29	GO:0032432: actin filament bundle	1.46E-03
30	GO:0031209: SCAR complex	3.08E-03
31	GO:0042807: central vacuole	4.38E-03
32	GO:0009986: cell surface	4.38E-03
33	GO:0009533: chloroplast stromal thylakoid	4.38E-03
34	GO:0005884: actin filament	9.14E-03
35	GO:0005887: integral component of plasma membrane	1.02E-02
36	GO:0030095: chloroplast photosystem II	1.20E-02
37	GO:0009654: photosystem II oxygen evolving complex	1.62E-02
38	GO:0015935: small ribosomal subunit	1.73E-02
39	GO:0031410: cytoplasmic vesicle	1.85E-02
40	GO:0015629: actin cytoskeleton	1.96E-02
41	GO:0009536: plastid	2.05E-02
42	GO:0019898: extrinsic component of membrane	2.72E-02
43	GO:0005778: peroxisomal membrane	3.42E-02
44	GO:0000151: ubiquitin ligase complex	4.49E-02
45	GO:0005773: vacuole	4.73E-02
46	GO:0005774: vacuolar membrane	4.82E-02