GO Enrichment Analysis of Co-expressed Genes with
AT5G48830
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 3 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 4 | GO:0009249: protein lipoylation | 0.00E+00 |
| 5 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 6 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 9 | GO:0009106: lipoate metabolic process | 0.00E+00 |
| 10 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 11 | GO:0032544: plastid translation | 2.72E-15 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 9.73E-12 |
| 13 | GO:0009658: chloroplast organization | 1.06E-11 |
| 14 | GO:0006412: translation | 1.68E-09 |
| 15 | GO:0009735: response to cytokinin | 5.27E-08 |
| 16 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.36E-07 |
| 17 | GO:0010027: thylakoid membrane organization | 6.14E-07 |
| 18 | GO:0042255: ribosome assembly | 2.86E-06 |
| 19 | GO:0015979: photosynthesis | 5.87E-06 |
| 20 | GO:0006783: heme biosynthetic process | 5.88E-06 |
| 21 | GO:0090391: granum assembly | 6.94E-06 |
| 22 | GO:0006779: porphyrin-containing compound biosynthetic process | 8.00E-06 |
| 23 | GO:0032502: developmental process | 9.65E-06 |
| 24 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.60E-05 |
| 25 | GO:1901259: chloroplast rRNA processing | 9.69E-05 |
| 26 | GO:0042372: phylloquinone biosynthetic process | 9.69E-05 |
| 27 | GO:0006353: DNA-templated transcription, termination | 1.64E-04 |
| 28 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.00E-04 |
| 29 | GO:1904964: positive regulation of phytol biosynthetic process | 2.00E-04 |
| 30 | GO:0042371: vitamin K biosynthetic process | 2.00E-04 |
| 31 | GO:0006436: tryptophanyl-tRNA aminoacylation | 2.00E-04 |
| 32 | GO:0010028: xanthophyll cycle | 2.00E-04 |
| 33 | GO:0034337: RNA folding | 2.00E-04 |
| 34 | GO:0042254: ribosome biogenesis | 2.08E-04 |
| 35 | GO:0042742: defense response to bacterium | 4.30E-04 |
| 36 | GO:0018026: peptidyl-lysine monomethylation | 4.48E-04 |
| 37 | GO:0080183: response to photooxidative stress | 4.48E-04 |
| 38 | GO:0006729: tetrahydrobiopterin biosynthetic process | 4.48E-04 |
| 39 | GO:0006568: tryptophan metabolic process | 4.48E-04 |
| 40 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.48E-04 |
| 41 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.48E-04 |
| 42 | GO:0009790: embryo development | 4.64E-04 |
| 43 | GO:0015714: phosphoenolpyruvate transport | 7.29E-04 |
| 44 | GO:0006518: peptide metabolic process | 7.29E-04 |
| 45 | GO:0006760: folic acid-containing compound metabolic process | 7.29E-04 |
| 46 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.04E-03 |
| 47 | GO:0006986: response to unfolded protein | 1.04E-03 |
| 48 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.04E-03 |
| 49 | GO:0006241: CTP biosynthetic process | 1.04E-03 |
| 50 | GO:0006165: nucleoside diphosphate phosphorylation | 1.04E-03 |
| 51 | GO:0006228: UTP biosynthetic process | 1.04E-03 |
| 52 | GO:0046656: folic acid biosynthetic process | 1.38E-03 |
| 53 | GO:0006021: inositol biosynthetic process | 1.38E-03 |
| 54 | GO:0006183: GTP biosynthetic process | 1.38E-03 |
| 55 | GO:0015713: phosphoglycerate transport | 1.38E-03 |
| 56 | GO:0044206: UMP salvage | 1.38E-03 |
| 57 | GO:0043097: pyrimidine nucleoside salvage | 1.76E-03 |
| 58 | GO:0010236: plastoquinone biosynthetic process | 1.76E-03 |
| 59 | GO:0009107: lipoate biosynthetic process | 1.76E-03 |
| 60 | GO:0046855: inositol phosphate dephosphorylation | 2.17E-03 |
| 61 | GO:0006796: phosphate-containing compound metabolic process | 2.17E-03 |
| 62 | GO:0042793: transcription from plastid promoter | 2.17E-03 |
| 63 | GO:0010190: cytochrome b6f complex assembly | 2.17E-03 |
| 64 | GO:0006206: pyrimidine nucleobase metabolic process | 2.17E-03 |
| 65 | GO:0017148: negative regulation of translation | 2.60E-03 |
| 66 | GO:0046654: tetrahydrofolate biosynthetic process | 2.60E-03 |
| 67 | GO:0010019: chloroplast-nucleus signaling pathway | 2.60E-03 |
| 68 | GO:0010555: response to mannitol | 2.60E-03 |
| 69 | GO:0009955: adaxial/abaxial pattern specification | 2.60E-03 |
| 70 | GO:0042026: protein refolding | 2.60E-03 |
| 71 | GO:0006457: protein folding | 2.65E-03 |
| 72 | GO:0009772: photosynthetic electron transport in photosystem II | 3.06E-03 |
| 73 | GO:0010196: nonphotochemical quenching | 3.06E-03 |
| 74 | GO:0006633: fatty acid biosynthetic process | 3.11E-03 |
| 75 | GO:0009627: systemic acquired resistance | 3.12E-03 |
| 76 | GO:0006605: protein targeting | 3.55E-03 |
| 77 | GO:0048564: photosystem I assembly | 3.55E-03 |
| 78 | GO:0009642: response to light intensity | 3.55E-03 |
| 79 | GO:0009657: plastid organization | 4.06E-03 |
| 80 | GO:0008380: RNA splicing | 4.38E-03 |
| 81 | GO:0098656: anion transmembrane transport | 4.60E-03 |
| 82 | GO:0009245: lipid A biosynthetic process | 4.60E-03 |
| 83 | GO:0043067: regulation of programmed cell death | 5.15E-03 |
| 84 | GO:0045036: protein targeting to chloroplast | 5.74E-03 |
| 85 | GO:0006415: translational termination | 6.34E-03 |
| 86 | GO:0009073: aromatic amino acid family biosynthetic process | 6.34E-03 |
| 87 | GO:0043085: positive regulation of catalytic activity | 6.34E-03 |
| 88 | GO:0006790: sulfur compound metabolic process | 6.96E-03 |
| 89 | GO:0045037: protein import into chloroplast stroma | 6.96E-03 |
| 90 | GO:0080167: response to karrikin | 8.02E-03 |
| 91 | GO:0019253: reductive pentose-phosphate cycle | 8.28E-03 |
| 92 | GO:0010020: chloroplast fission | 8.28E-03 |
| 93 | GO:0019853: L-ascorbic acid biosynthetic process | 8.97E-03 |
| 94 | GO:0046854: phosphatidylinositol phosphorylation | 8.97E-03 |
| 95 | GO:0009409: response to cold | 9.82E-03 |
| 96 | GO:0019344: cysteine biosynthetic process | 1.04E-02 |
| 97 | GO:0009116: nucleoside metabolic process | 1.04E-02 |
| 98 | GO:0006418: tRNA aminoacylation for protein translation | 1.12E-02 |
| 99 | GO:0061077: chaperone-mediated protein folding | 1.19E-02 |
| 100 | GO:0007005: mitochondrion organization | 1.27E-02 |
| 101 | GO:0009411: response to UV | 1.35E-02 |
| 102 | GO:0009306: protein secretion | 1.43E-02 |
| 103 | GO:0016117: carotenoid biosynthetic process | 1.52E-02 |
| 104 | GO:0008033: tRNA processing | 1.60E-02 |
| 105 | GO:0000413: protein peptidyl-prolyl isomerization | 1.60E-02 |
| 106 | GO:0042335: cuticle development | 1.60E-02 |
| 107 | GO:0006662: glycerol ether metabolic process | 1.69E-02 |
| 108 | GO:0010197: polar nucleus fusion | 1.69E-02 |
| 109 | GO:0009741: response to brassinosteroid | 1.69E-02 |
| 110 | GO:0006413: translational initiation | 1.85E-02 |
| 111 | GO:1901657: glycosyl compound metabolic process | 2.16E-02 |
| 112 | GO:0010286: heat acclimation | 2.35E-02 |
| 113 | GO:0009416: response to light stimulus | 2.71E-02 |
| 114 | GO:0048481: plant ovule development | 3.09E-02 |
| 115 | GO:0018298: protein-chromophore linkage | 3.09E-02 |
| 116 | GO:0008219: cell death | 3.09E-02 |
| 117 | GO:0034599: cellular response to oxidative stress | 3.77E-02 |
| 118 | GO:0030001: metal ion transport | 4.01E-02 |
| 119 | GO:0042542: response to hydrogen peroxide | 4.25E-02 |
| 120 | GO:0008643: carbohydrate transport | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0033819: lipoyl(octanoyl) transferase activity | 0.00E+00 |
| 5 | GO:0009974: zeinoxanthin epsilon hydroxylase activity | 0.00E+00 |
| 6 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 7 | GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding | 0.00E+00 |
| 8 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 9 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 10 | GO:0019843: rRNA binding | 3.68E-15 |
| 11 | GO:0003735: structural constituent of ribosome | 9.71E-12 |
| 12 | GO:0016851: magnesium chelatase activity | 1.60E-05 |
| 13 | GO:0003727: single-stranded RNA binding | 9.23E-05 |
| 14 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.00E-04 |
| 15 | GO:0009374: biotin binding | 2.00E-04 |
| 16 | GO:0004830: tryptophan-tRNA ligase activity | 2.00E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.00E-04 |
| 18 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.00E-04 |
| 19 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.00E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.00E-04 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.00E-04 |
| 22 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 2.00E-04 |
| 23 | GO:0004655: porphobilinogen synthase activity | 2.00E-04 |
| 24 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.00E-04 |
| 25 | GO:0051082: unfolded protein binding | 2.53E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 4.48E-04 |
| 27 | GO:0004150: dihydroneopterin aldolase activity | 4.48E-04 |
| 28 | GO:0017118: lipoyltransferase activity | 4.48E-04 |
| 29 | GO:0016415: octanoyltransferase activity | 4.48E-04 |
| 30 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 4.48E-04 |
| 31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.48E-04 |
| 32 | GO:0004312: fatty acid synthase activity | 4.48E-04 |
| 33 | GO:0004817: cysteine-tRNA ligase activity | 4.48E-04 |
| 34 | GO:0000774: adenyl-nucleotide exchange factor activity | 4.48E-04 |
| 35 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.48E-04 |
| 36 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.48E-04 |
| 37 | GO:0004751: ribose-5-phosphate isomerase activity | 7.29E-04 |
| 38 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 7.29E-04 |
| 39 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.29E-04 |
| 40 | GO:0051087: chaperone binding | 8.95E-04 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.42E-04 |
| 42 | GO:0016149: translation release factor activity, codon specific | 1.04E-03 |
| 43 | GO:0004550: nucleoside diphosphate kinase activity | 1.04E-03 |
| 44 | GO:0043023: ribosomal large subunit binding | 1.04E-03 |
| 45 | GO:0008097: 5S rRNA binding | 1.04E-03 |
| 46 | GO:0003690: double-stranded DNA binding | 1.17E-03 |
| 47 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.38E-03 |
| 48 | GO:0004659: prenyltransferase activity | 1.38E-03 |
| 49 | GO:0016279: protein-lysine N-methyltransferase activity | 1.38E-03 |
| 50 | GO:0004845: uracil phosphoribosyltransferase activity | 1.38E-03 |
| 51 | GO:0043495: protein anchor | 1.38E-03 |
| 52 | GO:0003959: NADPH dehydrogenase activity | 1.76E-03 |
| 53 | GO:0030414: peptidase inhibitor activity | 1.76E-03 |
| 54 | GO:0003989: acetyl-CoA carboxylase activity | 1.76E-03 |
| 55 | GO:0004040: amidase activity | 1.76E-03 |
| 56 | GO:0031177: phosphopantetheine binding | 2.17E-03 |
| 57 | GO:0016208: AMP binding | 2.17E-03 |
| 58 | GO:0016462: pyrophosphatase activity | 2.17E-03 |
| 59 | GO:0004849: uridine kinase activity | 2.60E-03 |
| 60 | GO:0000035: acyl binding | 2.60E-03 |
| 61 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.60E-03 |
| 62 | GO:0019899: enzyme binding | 3.06E-03 |
| 63 | GO:0004427: inorganic diphosphatase activity | 3.06E-03 |
| 64 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.55E-03 |
| 65 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.65E-03 |
| 66 | GO:0003747: translation release factor activity | 4.60E-03 |
| 67 | GO:0003746: translation elongation factor activity | 4.61E-03 |
| 68 | GO:0008047: enzyme activator activity | 5.74E-03 |
| 69 | GO:0003723: RNA binding | 6.08E-03 |
| 70 | GO:0044183: protein binding involved in protein folding | 6.34E-03 |
| 71 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.61E-03 |
| 72 | GO:0031072: heat shock protein binding | 7.61E-03 |
| 73 | GO:0051119: sugar transmembrane transporter activity | 8.97E-03 |
| 74 | GO:0005528: FK506 binding | 1.04E-02 |
| 75 | GO:0003729: mRNA binding | 1.16E-02 |
| 76 | GO:0004176: ATP-dependent peptidase activity | 1.19E-02 |
| 77 | GO:0022891: substrate-specific transmembrane transporter activity | 1.35E-02 |
| 78 | GO:0008514: organic anion transmembrane transporter activity | 1.43E-02 |
| 79 | GO:0047134: protein-disulfide reductase activity | 1.52E-02 |
| 80 | GO:0004812: aminoacyl-tRNA ligase activity | 1.52E-02 |
| 81 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.69E-02 |
| 82 | GO:0004791: thioredoxin-disulfide reductase activity | 1.78E-02 |
| 83 | GO:0010181: FMN binding | 1.78E-02 |
| 84 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.16E-02 |
| 85 | GO:0003743: translation initiation factor activity | 2.32E-02 |
| 86 | GO:0008483: transaminase activity | 2.35E-02 |
| 87 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 2.35E-02 |
| 88 | GO:0008237: metallopeptidase activity | 2.35E-02 |
| 89 | GO:0042802: identical protein binding | 2.52E-02 |
| 90 | GO:0016168: chlorophyll binding | 2.66E-02 |
| 91 | GO:0102483: scopolin beta-glucosidase activity | 2.87E-02 |
| 92 | GO:0000287: magnesium ion binding | 3.01E-02 |
| 93 | GO:0016491: oxidoreductase activity | 3.01E-02 |
| 94 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.31E-02 |
| 95 | GO:0004222: metalloendopeptidase activity | 3.31E-02 |
| 96 | GO:0008422: beta-glucosidase activity | 3.89E-02 |
| 97 | GO:0005507: copper ion binding | 4.20E-02 |
| 98 | GO:0042803: protein homodimerization activity | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.36E-70 |
| 3 | GO:0009570: chloroplast stroma | 5.33E-52 |
| 4 | GO:0009941: chloroplast envelope | 2.21E-39 |
| 5 | GO:0009579: thylakoid | 6.28E-23 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 6.71E-17 |
| 7 | GO:0005840: ribosome | 1.44E-11 |
| 8 | GO:0009536: plastid | 6.32E-08 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 1.38E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.66E-06 |
| 11 | GO:0031977: thylakoid lumen | 3.76E-06 |
| 12 | GO:0009295: nucleoid | 1.44E-05 |
| 13 | GO:0009534: chloroplast thylakoid | 1.84E-05 |
| 14 | GO:0009508: plastid chromosome | 2.16E-05 |
| 15 | GO:0019898: extrinsic component of membrane | 1.60E-04 |
| 16 | GO:0009515: granal stacked thylakoid | 2.00E-04 |
| 17 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.00E-04 |
| 18 | GO:0031969: chloroplast membrane | 3.04E-04 |
| 19 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 4.48E-04 |
| 20 | GO:0000311: plastid large ribosomal subunit | 4.63E-04 |
| 21 | GO:0015934: large ribosomal subunit | 5.04E-04 |
| 22 | GO:0000312: plastid small ribosomal subunit | 5.92E-04 |
| 23 | GO:0009317: acetyl-CoA carboxylase complex | 7.29E-04 |
| 24 | GO:0010007: magnesium chelatase complex | 7.29E-04 |
| 25 | GO:0042651: thylakoid membrane | 8.95E-04 |
| 26 | GO:0048046: apoplast | 2.53E-03 |
| 27 | GO:0005759: mitochondrial matrix | 3.11E-03 |
| 28 | GO:0009707: chloroplast outer membrane | 3.65E-03 |
| 29 | GO:0009539: photosystem II reaction center | 4.06E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 4.60E-03 |
| 31 | GO:0032040: small-subunit processome | 6.96E-03 |
| 32 | GO:0030095: chloroplast photosystem II | 8.28E-03 |
| 33 | GO:0009706: chloroplast inner membrane | 1.14E-02 |
| 34 | GO:0015935: small ribosomal subunit | 1.19E-02 |
| 35 | GO:0005623: cell | 1.47E-02 |
| 36 | GO:0009523: photosystem II | 1.87E-02 |
| 37 | GO:0016592: mediator complex | 2.06E-02 |
| 38 | GO:0005778: peroxisomal membrane | 2.35E-02 |
| 39 | GO:0010319: stromule | 2.35E-02 |
| 40 | GO:0022626: cytosolic ribosome | 2.57E-02 |
| 41 | GO:0022627: cytosolic small ribosomal subunit | 2.62E-02 |