GO Enrichment Analysis of Co-expressed Genes with
AT5G48220
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0042407: cristae formation | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 7 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 8 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 9 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 10 | GO:0006223: uracil salvage | 0.00E+00 |
| 11 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 4.08E-13 |
| 13 | GO:0032544: plastid translation | 3.93E-10 |
| 14 | GO:0015979: photosynthesis | 6.89E-08 |
| 15 | GO:1901259: chloroplast rRNA processing | 1.68E-06 |
| 16 | GO:0006783: heme biosynthetic process | 8.44E-06 |
| 17 | GO:0090391: granum assembly | 9.11E-06 |
| 18 | GO:0006782: protoporphyrinogen IX biosynthetic process | 1.51E-05 |
| 19 | GO:0051085: chaperone mediated protein folding requiring cofactor | 2.08E-05 |
| 20 | GO:0009658: chloroplast organization | 4.12E-05 |
| 21 | GO:0009735: response to cytokinin | 1.02E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.32E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 2.32E-04 |
| 24 | GO:0042371: vitamin K biosynthetic process | 2.32E-04 |
| 25 | GO:0010028: xanthophyll cycle | 2.32E-04 |
| 26 | GO:0034337: RNA folding | 2.32E-04 |
| 27 | GO:0009443: pyridoxal 5'-phosphate salvage | 2.32E-04 |
| 28 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.67E-04 |
| 29 | GO:0010027: thylakoid membrane organization | 3.89E-04 |
| 30 | GO:0080183: response to photooxidative stress | 5.15E-04 |
| 31 | GO:0006529: asparagine biosynthetic process | 5.15E-04 |
| 32 | GO:0006729: tetrahydrobiopterin biosynthetic process | 5.15E-04 |
| 33 | GO:2000123: positive regulation of stomatal complex development | 5.15E-04 |
| 34 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.15E-04 |
| 35 | GO:0006423: cysteinyl-tRNA aminoacylation | 5.15E-04 |
| 36 | GO:0070981: L-asparagine biosynthetic process | 5.15E-04 |
| 37 | GO:0051604: protein maturation | 8.37E-04 |
| 38 | GO:0071492: cellular response to UV-A | 8.37E-04 |
| 39 | GO:0006760: folic acid-containing compound metabolic process | 8.37E-04 |
| 40 | GO:0006986: response to unfolded protein | 1.19E-03 |
| 41 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.19E-03 |
| 42 | GO:0006241: CTP biosynthetic process | 1.19E-03 |
| 43 | GO:0006165: nucleoside diphosphate phosphorylation | 1.19E-03 |
| 44 | GO:0006228: UTP biosynthetic process | 1.19E-03 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.19E-03 |
| 46 | GO:0033014: tetrapyrrole biosynthetic process | 1.19E-03 |
| 47 | GO:0071486: cellular response to high light intensity | 1.59E-03 |
| 48 | GO:0006183: GTP biosynthetic process | 1.59E-03 |
| 49 | GO:0030007: cellular potassium ion homeostasis | 1.59E-03 |
| 50 | GO:0044206: UMP salvage | 1.59E-03 |
| 51 | GO:2000038: regulation of stomatal complex development | 1.59E-03 |
| 52 | GO:0046656: folic acid biosynthetic process | 1.59E-03 |
| 53 | GO:0006021: inositol biosynthetic process | 1.59E-03 |
| 54 | GO:0010236: plastoquinone biosynthetic process | 2.03E-03 |
| 55 | GO:0016123: xanthophyll biosynthetic process | 2.03E-03 |
| 56 | GO:0010375: stomatal complex patterning | 2.03E-03 |
| 57 | GO:0043097: pyrimidine nucleoside salvage | 2.03E-03 |
| 58 | GO:0009117: nucleotide metabolic process | 2.50E-03 |
| 59 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.50E-03 |
| 60 | GO:0006555: methionine metabolic process | 2.50E-03 |
| 61 | GO:0006206: pyrimidine nucleobase metabolic process | 2.50E-03 |
| 62 | GO:0046855: inositol phosphate dephosphorylation | 2.50E-03 |
| 63 | GO:0006796: phosphate-containing compound metabolic process | 2.50E-03 |
| 64 | GO:0010190: cytochrome b6f complex assembly | 2.50E-03 |
| 65 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 2.50E-03 |
| 66 | GO:0032502: developmental process | 2.56E-03 |
| 67 | GO:0046654: tetrahydrofolate biosynthetic process | 3.00E-03 |
| 68 | GO:0009955: adaxial/abaxial pattern specification | 3.00E-03 |
| 69 | GO:0042026: protein refolding | 3.00E-03 |
| 70 | GO:0042372: phylloquinone biosynthetic process | 3.00E-03 |
| 71 | GO:0017148: negative regulation of translation | 3.00E-03 |
| 72 | GO:0009772: photosynthetic electron transport in photosystem II | 3.54E-03 |
| 73 | GO:0010196: nonphotochemical quenching | 3.54E-03 |
| 74 | GO:0006826: iron ion transport | 3.54E-03 |
| 75 | GO:0006412: translation | 3.79E-03 |
| 76 | GO:0009627: systemic acquired resistance | 3.86E-03 |
| 77 | GO:0006457: protein folding | 3.86E-03 |
| 78 | GO:0048564: photosystem I assembly | 4.10E-03 |
| 79 | GO:0042255: ribosome assembly | 4.10E-03 |
| 80 | GO:0006353: DNA-templated transcription, termination | 4.10E-03 |
| 81 | GO:0006875: cellular metal ion homeostasis | 4.10E-03 |
| 82 | GO:0009657: plastid organization | 4.70E-03 |
| 83 | GO:0098656: anion transmembrane transport | 5.32E-03 |
| 84 | GO:0009245: lipid A biosynthetic process | 5.32E-03 |
| 85 | GO:0034765: regulation of ion transmembrane transport | 5.32E-03 |
| 86 | GO:0043067: regulation of programmed cell death | 5.97E-03 |
| 87 | GO:0035999: tetrahydrofolate interconversion | 5.97E-03 |
| 88 | GO:0031425: chloroplast RNA processing | 5.97E-03 |
| 89 | GO:0045036: protein targeting to chloroplast | 6.65E-03 |
| 90 | GO:0019538: protein metabolic process | 6.65E-03 |
| 91 | GO:0006415: translational termination | 7.35E-03 |
| 92 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.35E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 7.35E-03 |
| 94 | GO:0006790: sulfur compound metabolic process | 8.08E-03 |
| 95 | GO:0045037: protein import into chloroplast stroma | 8.08E-03 |
| 96 | GO:0042742: defense response to bacterium | 8.43E-03 |
| 97 | GO:0009767: photosynthetic electron transport chain | 8.84E-03 |
| 98 | GO:0042538: hyperosmotic salinity response | 9.24E-03 |
| 99 | GO:0006541: glutamine metabolic process | 9.62E-03 |
| 100 | GO:0019253: reductive pentose-phosphate cycle | 9.62E-03 |
| 101 | GO:0046854: phosphatidylinositol phosphorylation | 1.04E-02 |
| 102 | GO:0019853: L-ascorbic acid biosynthetic process | 1.04E-02 |
| 103 | GO:0010039: response to iron ion | 1.04E-02 |
| 104 | GO:0080167: response to karrikin | 1.05E-02 |
| 105 | GO:0009116: nucleoside metabolic process | 1.21E-02 |
| 106 | GO:0045454: cell redox homeostasis | 1.32E-02 |
| 107 | GO:0051260: protein homooligomerization | 1.39E-02 |
| 108 | GO:0061077: chaperone-mediated protein folding | 1.39E-02 |
| 109 | GO:0016114: terpenoid biosynthetic process | 1.39E-02 |
| 110 | GO:0007005: mitochondrion organization | 1.48E-02 |
| 111 | GO:0006730: one-carbon metabolic process | 1.48E-02 |
| 112 | GO:0009411: response to UV | 1.57E-02 |
| 113 | GO:0009306: protein secretion | 1.67E-02 |
| 114 | GO:0016117: carotenoid biosynthetic process | 1.77E-02 |
| 115 | GO:0042335: cuticle development | 1.87E-02 |
| 116 | GO:0006662: glycerol ether metabolic process | 1.97E-02 |
| 117 | GO:0010197: polar nucleus fusion | 1.97E-02 |
| 118 | GO:0009741: response to brassinosteroid | 1.97E-02 |
| 119 | GO:0009646: response to absence of light | 2.07E-02 |
| 120 | GO:0009791: post-embryonic development | 2.18E-02 |
| 121 | GO:0006413: translational initiation | 2.29E-02 |
| 122 | GO:0010583: response to cyclopentenone | 2.40E-02 |
| 123 | GO:1901657: glycosyl compound metabolic process | 2.51E-02 |
| 124 | GO:0007267: cell-cell signaling | 2.74E-02 |
| 125 | GO:0010286: heat acclimation | 2.74E-02 |
| 126 | GO:0071805: potassium ion transmembrane transport | 2.74E-02 |
| 127 | GO:0008380: RNA splicing | 2.93E-02 |
| 128 | GO:0010029: regulation of seed germination | 3.10E-02 |
| 129 | GO:0018298: protein-chromophore linkage | 3.59E-02 |
| 130 | GO:0008219: cell death | 3.59E-02 |
| 131 | GO:0055114: oxidation-reduction process | 3.97E-02 |
| 132 | GO:0010119: regulation of stomatal movement | 3.98E-02 |
| 133 | GO:0034599: cellular response to oxidative stress | 4.39E-02 |
| 134 | GO:0006839: mitochondrial transport | 4.67E-02 |
| 135 | GO:0042542: response to hydrogen peroxide | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 4 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 5 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 6 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 7 | GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity | 0.00E+00 |
| 8 | GO:0015269: calcium-activated potassium channel activity | 0.00E+00 |
| 9 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 10 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 11 | GO:0070402: NADPH binding | 9.11E-06 |
| 12 | GO:0016851: magnesium chelatase activity | 2.08E-05 |
| 13 | GO:0043495: protein anchor | 3.78E-05 |
| 14 | GO:0051087: chaperone binding | 7.33E-05 |
| 15 | GO:0016462: pyrophosphatase activity | 8.88E-05 |
| 16 | GO:0015088: copper uptake transmembrane transporter activity | 2.32E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.32E-04 |
| 18 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.32E-04 |
| 19 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.32E-04 |
| 20 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.32E-04 |
| 21 | GO:0004071: aspartate-ammonia ligase activity | 2.32E-04 |
| 22 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.32E-04 |
| 23 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 2.32E-04 |
| 24 | GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity | 2.32E-04 |
| 25 | GO:0051082: unfolded protein binding | 3.56E-04 |
| 26 | GO:0010291: carotene beta-ring hydroxylase activity | 5.15E-04 |
| 27 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.15E-04 |
| 28 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.15E-04 |
| 29 | GO:0004817: cysteine-tRNA ligase activity | 5.15E-04 |
| 30 | GO:0000774: adenyl-nucleotide exchange factor activity | 5.15E-04 |
| 31 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.15E-04 |
| 32 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.15E-04 |
| 33 | GO:0016630: protochlorophyllide reductase activity | 5.15E-04 |
| 34 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 5.15E-04 |
| 35 | GO:0004150: dihydroneopterin aldolase activity | 5.15E-04 |
| 36 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.15E-04 |
| 37 | GO:0042803: protein homodimerization activity | 6.76E-04 |
| 38 | GO:0004751: ribose-5-phosphate isomerase activity | 8.37E-04 |
| 39 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.37E-04 |
| 40 | GO:0004550: nucleoside diphosphate kinase activity | 1.19E-03 |
| 41 | GO:0043023: ribosomal large subunit binding | 1.19E-03 |
| 42 | GO:0008097: 5S rRNA binding | 1.19E-03 |
| 43 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.19E-03 |
| 44 | GO:0035529: NADH pyrophosphatase activity | 1.19E-03 |
| 45 | GO:0016149: translation release factor activity, codon specific | 1.19E-03 |
| 46 | GO:0022891: substrate-specific transmembrane transporter activity | 1.42E-03 |
| 47 | GO:0004659: prenyltransferase activity | 1.59E-03 |
| 48 | GO:0004845: uracil phosphoribosyltransferase activity | 1.59E-03 |
| 49 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.59E-03 |
| 50 | GO:0004040: amidase activity | 2.03E-03 |
| 51 | GO:0003959: NADPH dehydrogenase activity | 2.03E-03 |
| 52 | GO:0030414: peptidase inhibitor activity | 2.03E-03 |
| 53 | GO:0015035: protein disulfide oxidoreductase activity | 2.38E-03 |
| 54 | GO:0015271: outward rectifier potassium channel activity | 2.50E-03 |
| 55 | GO:0031177: phosphopantetheine binding | 2.50E-03 |
| 56 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.00E-03 |
| 57 | GO:0004849: uridine kinase activity | 3.00E-03 |
| 58 | GO:0000035: acyl binding | 3.00E-03 |
| 59 | GO:0019843: rRNA binding | 3.05E-03 |
| 60 | GO:0003735: structural constituent of ribosome | 3.14E-03 |
| 61 | GO:0004427: inorganic diphosphatase activity | 3.54E-03 |
| 62 | GO:0019899: enzyme binding | 3.54E-03 |
| 63 | GO:0016168: chlorophyll binding | 3.65E-03 |
| 64 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.10E-03 |
| 65 | GO:0004033: aldo-keto reductase (NADP) activity | 4.10E-03 |
| 66 | GO:0016491: oxidoreductase activity | 4.23E-03 |
| 67 | GO:0005267: potassium channel activity | 4.70E-03 |
| 68 | GO:0003747: translation release factor activity | 5.32E-03 |
| 69 | GO:0005381: iron ion transmembrane transporter activity | 5.97E-03 |
| 70 | GO:0008047: enzyme activator activity | 6.65E-03 |
| 71 | GO:0044183: protein binding involved in protein folding | 7.35E-03 |
| 72 | GO:0008794: arsenate reductase (glutaredoxin) activity | 7.35E-03 |
| 73 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.96E-03 |
| 74 | GO:0000049: tRNA binding | 8.08E-03 |
| 75 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 8.59E-03 |
| 76 | GO:0005315: inorganic phosphate transmembrane transporter activity | 8.84E-03 |
| 77 | GO:0031072: heat shock protein binding | 8.84E-03 |
| 78 | GO:0051119: sugar transmembrane transporter activity | 1.04E-02 |
| 79 | GO:0005528: FK506 binding | 1.21E-02 |
| 80 | GO:0004650: polygalacturonase activity | 1.29E-02 |
| 81 | GO:0043424: protein histidine kinase binding | 1.30E-02 |
| 82 | GO:0005216: ion channel activity | 1.30E-02 |
| 83 | GO:0004176: ATP-dependent peptidase activity | 1.39E-02 |
| 84 | GO:0005507: copper ion binding | 1.63E-02 |
| 85 | GO:0003727: single-stranded RNA binding | 1.67E-02 |
| 86 | GO:0008514: organic anion transmembrane transporter activity | 1.67E-02 |
| 87 | GO:0047134: protein-disulfide reductase activity | 1.77E-02 |
| 88 | GO:0004791: thioredoxin-disulfide reductase activity | 2.07E-02 |
| 89 | GO:0010181: FMN binding | 2.07E-02 |
| 90 | GO:0019901: protein kinase binding | 2.18E-02 |
| 91 | GO:0005509: calcium ion binding | 2.44E-02 |
| 92 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.51E-02 |
| 93 | GO:0008483: transaminase activity | 2.74E-02 |
| 94 | GO:0008237: metallopeptidase activity | 2.74E-02 |
| 95 | GO:0003743: translation initiation factor activity | 2.87E-02 |
| 96 | GO:0016887: ATPase activity | 2.99E-02 |
| 97 | GO:0042802: identical protein binding | 3.12E-02 |
| 98 | GO:0102483: scopolin beta-glucosidase activity | 3.34E-02 |
| 99 | GO:0008236: serine-type peptidase activity | 3.47E-02 |
| 100 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.59E-02 |
| 101 | GO:0004601: peroxidase activity | 3.79E-02 |
| 102 | GO:0003746: translation elongation factor activity | 4.25E-02 |
| 103 | GO:0008422: beta-glucosidase activity | 4.53E-02 |
| 104 | GO:0003729: mRNA binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.74E-63 |
| 2 | GO:0009570: chloroplast stroma | 2.92E-42 |
| 3 | GO:0009941: chloroplast envelope | 5.02E-32 |
| 4 | GO:0009579: thylakoid | 6.59E-22 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.28E-18 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 4.73E-10 |
| 7 | GO:0031977: thylakoid lumen | 8.24E-09 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 3.88E-08 |
| 9 | GO:0009534: chloroplast thylakoid | 4.97E-06 |
| 10 | GO:0005840: ribosome | 6.33E-06 |
| 11 | GO:0019898: extrinsic component of membrane | 1.13E-05 |
| 12 | GO:0009536: plastid | 1.21E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 2.32E-04 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.32E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 3.56E-04 |
| 16 | GO:0031969: chloroplast membrane | 4.51E-04 |
| 17 | GO:0009508: plastid chromosome | 6.45E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 8.37E-04 |
| 19 | GO:0033281: TAT protein transport complex | 8.37E-04 |
| 20 | GO:0031897: Tic complex | 1.59E-03 |
| 21 | GO:0009526: plastid envelope | 1.59E-03 |
| 22 | GO:0055035: plastid thylakoid membrane | 2.03E-03 |
| 23 | GO:0009523: photosystem II | 2.24E-03 |
| 24 | GO:0009295: nucleoid | 3.08E-03 |
| 25 | GO:0030529: intracellular ribonucleoprotein complex | 3.46E-03 |
| 26 | GO:0005759: mitochondrial matrix | 4.07E-03 |
| 27 | GO:0009539: photosystem II reaction center | 4.70E-03 |
| 28 | GO:0005763: mitochondrial small ribosomal subunit | 5.32E-03 |
| 29 | GO:0032040: small-subunit processome | 8.08E-03 |
| 30 | GO:0030095: chloroplast photosystem II | 9.62E-03 |
| 31 | GO:0043234: protein complex | 1.13E-02 |
| 32 | GO:0042651: thylakoid membrane | 1.30E-02 |
| 33 | GO:0009532: plastid stroma | 1.39E-02 |
| 34 | GO:0005778: peroxisomal membrane | 2.74E-02 |
| 35 | GO:0010319: stromule | 2.74E-02 |
| 36 | GO:0048046: apoplast | 2.98E-02 |
| 37 | GO:0009707: chloroplast outer membrane | 3.59E-02 |
| 38 | GO:0015934: large ribosomal subunit | 3.98E-02 |