co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G47840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019323: pentose catabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0042493: response to drug	0.00E+00
7	GO:0015979: photosynthesis	1.25E-11
8	GO:0009773: photosynthetic electron transport in photosystem I	5.42E-10
9	GO:0010206: photosystem II repair	8.16E-07
10	GO:0010207: photosystem II assembly	6.35E-06
11	GO:0015995: chlorophyll biosynthetic process	1.82E-05
12	GO:0034220: ion transmembrane transport	4.73E-05
13	GO:0080170: hydrogen peroxide transmembrane transport	6.40E-05
14	GO:0009765: photosynthesis, light harvesting	1.12E-04
15	GO:0006546: glycine catabolic process	1.12E-04
16	GO:0006833: water transport	2.11E-04
17	GO:0010411: xyloglucan metabolic process	2.14E-04
18	GO:0042549: photosystem II stabilization	2.46E-04
19	GO:0009735: response to cytokinin	2.72E-04
20	GO:0010218: response to far red light	2.99E-04
21	GO:0042254: ribosome biogenesis	3.96E-04
22	GO:0010196: nonphotochemical quenching	4.25E-04
23	GO:0009645: response to low light intensity stimulus	4.25E-04
24	GO:0034337: RNA folding	4.40E-04
25	GO:0071588: hydrogen peroxide mediated signaling pathway	4.40E-04
26	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.40E-04
27	GO:0060627: regulation of vesicle-mediated transport	4.40E-04
28	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.40E-04
29	GO:0046520: sphingoid biosynthetic process	4.40E-04
30	GO:0044262: cellular carbohydrate metabolic process	4.40E-04
31	GO:0006824: cobalt ion transport	4.40E-04
32	GO:0071370: cellular response to gibberellin stimulus	4.40E-04
33	GO:0000481: maturation of 5S rRNA	4.40E-04
34	GO:0033206: meiotic cytokinesis	4.40E-04
35	GO:0006810: transport	6.13E-04
36	GO:0030388: fructose 1,6-bisphosphate metabolic process	9.50E-04
37	GO:0034755: iron ion transmembrane transport	9.50E-04
38	GO:0010541: acropetal auxin transport	9.50E-04
39	GO:0001736: establishment of planar polarity	9.50E-04
40	GO:0010027: thylakoid membrane organization	1.27E-03
41	GO:0009624: response to nematode	1.50E-03
42	GO:0006000: fructose metabolic process	1.55E-03
43	GO:0090391: granum assembly	1.55E-03
44	GO:0006518: peptide metabolic process	1.55E-03
45	GO:0010160: formation of animal organ boundary	1.55E-03
46	GO:0045493: xylan catabolic process	1.55E-03
47	GO:2001295: malonyl-CoA biosynthetic process	1.55E-03
48	GO:0018298: protein-chromophore linkage	1.78E-03
49	GO:0010143: cutin biosynthetic process	1.80E-03
50	GO:0005985: sucrose metabolic process	2.02E-03
51	GO:0051513: regulation of monopolar cell growth	2.24E-03
52	GO:0007231: osmosensory signaling pathway	2.24E-03
53	GO:0071484: cellular response to light intensity	2.24E-03
54	GO:0051639: actin filament network formation	2.24E-03
55	GO:0034059: response to anoxia	2.24E-03
56	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.24E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.24E-03
58	GO:0009650: UV protection	2.24E-03
59	GO:0010306: rhamnogalacturonan II biosynthetic process	2.24E-03
60	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.24E-03
61	GO:1901332: negative regulation of lateral root development	2.24E-03
62	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.24E-03
63	GO:0009637: response to blue light	2.41E-03
64	GO:0009768: photosynthesis, light harvesting in photosystem I	2.75E-03
65	GO:0015976: carbon utilization	3.01E-03
66	GO:0051764: actin crosslink formation	3.01E-03
67	GO:0019464: glycine decarboxylation via glycine cleavage system	3.01E-03
68	GO:0006085: acetyl-CoA biosynthetic process	3.01E-03
69	GO:0045727: positive regulation of translation	3.01E-03
70	GO:0015994: chlorophyll metabolic process	3.01E-03
71	GO:2000122: negative regulation of stomatal complex development	3.01E-03
72	GO:0030104: water homeostasis	3.01E-03
73	GO:0033500: carbohydrate homeostasis	3.01E-03
74	GO:0010037: response to carbon dioxide	3.01E-03
75	GO:0006808: regulation of nitrogen utilization	3.01E-03
76	GO:0045454: cell redox homeostasis	3.29E-03
77	GO:0010114: response to red light	3.33E-03
78	GO:0045490: pectin catabolic process	3.48E-03
79	GO:0042546: cell wall biogenesis	3.50E-03
80	GO:0016123: xanthophyll biosynthetic process	3.85E-03
81	GO:0034052: positive regulation of plant-type hypersensitive response	3.85E-03
82	GO:0016120: carotene biosynthetic process	3.85E-03
83	GO:0016042: lipid catabolic process	4.53E-03
84	GO:0000413: protein peptidyl-prolyl isomerization	4.60E-03
85	GO:0060918: auxin transport	4.77E-03
86	GO:1902456: regulation of stomatal opening	4.77E-03
87	GO:0009958: positive gravitropism	4.97E-03
88	GO:0042742: defense response to bacterium	5.62E-03
89	GO:0009612: response to mechanical stimulus	5.75E-03
90	GO:2000033: regulation of seed dormancy process	5.75E-03
91	GO:0010019: chloroplast-nucleus signaling pathway	5.75E-03
92	GO:0000302: response to reactive oxygen species	6.14E-03
93	GO:0055085: transmembrane transport	6.42E-03
94	GO:1900056: negative regulation of leaf senescence	6.80E-03
95	GO:0009769: photosynthesis, light harvesting in photosystem II	6.80E-03
96	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	7.91E-03
97	GO:0043068: positive regulation of programmed cell death	7.91E-03
98	GO:0032508: DNA duplex unwinding	7.91E-03
99	GO:0045010: actin nucleation	7.91E-03
100	GO:0009723: response to ethylene	8.46E-03
101	GO:0006412: translation	8.72E-03
102	GO:0006002: fructose 6-phosphate metabolic process	9.09E-03
103	GO:0010233: phloem transport	9.09E-03
104	GO:0009657: plastid organization	9.09E-03
105	GO:0032544: plastid translation	9.09E-03
106	GO:0042128: nitrate assimilation	9.96E-03
107	GO:0009051: pentose-phosphate shunt, oxidative branch	1.03E-02
108	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.03E-02
109	GO:0009409: response to cold	1.08E-02
110	GO:0009638: phototropism	1.16E-02
111	GO:0009817: defense response to fungus, incompatible interaction	1.17E-02
112	GO:0010311: lateral root formation	1.22E-02
113	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.30E-02
114	GO:0048829: root cap development	1.30E-02
115	GO:0009684: indoleacetic acid biosynthetic process	1.44E-02
116	GO:0010015: root morphogenesis	1.44E-02
117	GO:0006816: calcium ion transport	1.44E-02
118	GO:0048765: root hair cell differentiation	1.44E-02
119	GO:0034599: cellular response to oxidative stress	1.55E-02
120	GO:0008361: regulation of cell size	1.58E-02
121	GO:0016024: CDP-diacylglycerol biosynthetic process	1.58E-02
122	GO:0006094: gluconeogenesis	1.73E-02
123	GO:0005986: sucrose biosynthetic process	1.73E-02
124	GO:0006006: glucose metabolic process	1.73E-02
125	GO:0030036: actin cytoskeleton organization	1.73E-02
126	GO:0010540: basipetal auxin transport	1.89E-02
127	GO:0019253: reductive pentose-phosphate cycle	1.89E-02
128	GO:0009640: photomorphogenesis	1.91E-02
129	GO:0009926: auxin polar transport	1.91E-02
130	GO:0008152: metabolic process	1.96E-02
131	GO:0010030: positive regulation of seed germination	2.05E-02
132	GO:0070588: calcium ion transmembrane transport	2.05E-02
133	GO:0009644: response to high light intensity	2.07E-02
134	GO:0000027: ribosomal large subunit assembly	2.38E-02
135	GO:0009863: salicylic acid mediated signaling pathway	2.38E-02
136	GO:0010187: negative regulation of seed germination	2.38E-02
137	GO:0051017: actin filament bundle assembly	2.38E-02
138	GO:2000377: regulation of reactive oxygen species metabolic process	2.38E-02
139	GO:0005992: trehalose biosynthetic process	2.38E-02
140	GO:0042538: hyperosmotic salinity response	2.41E-02
141	GO:0009664: plant-type cell wall organization	2.41E-02
142	GO:0007017: microtubule-based process	2.55E-02
143	GO:0009658: chloroplast organization	2.67E-02
144	GO:0048511: rhythmic process	2.73E-02
145	GO:0009269: response to desiccation	2.73E-02
146	GO:0003333: amino acid transmembrane transport	2.73E-02
147	GO:0009734: auxin-activated signaling pathway	2.82E-02
148	GO:0009814: defense response, incompatible interaction	2.91E-02
149	GO:0035428: hexose transmembrane transport	2.91E-02
150	GO:0006012: galactose metabolic process	3.10E-02
151	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.10E-02
152	GO:0009411: response to UV	3.10E-02
153	GO:0048443: stamen development	3.29E-02
154	GO:0006284: base-excision repair	3.29E-02
155	GO:0009306: protein secretion	3.29E-02
156	GO:0009740: gibberellic acid mediated signaling pathway	3.46E-02
157	GO:0005975: carbohydrate metabolic process	3.47E-02
158	GO:0016117: carotenoid biosynthetic process	3.48E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.48E-02
160	GO:0080167: response to karrikin	3.49E-02
161	GO:0042631: cellular response to water deprivation	3.68E-02
162	GO:0080022: primary root development	3.68E-02
163	GO:0048868: pollen tube development	3.88E-02
164	GO:0046323: glucose import	3.88E-02
165	GO:0042752: regulation of circadian rhythm	4.09E-02
166	GO:0015986: ATP synthesis coupled proton transport	4.09E-02
167	GO:0071555: cell wall organization	4.24E-02
168	GO:0071554: cell wall organization or biogenesis	4.51E-02
169	GO:0002229: defense response to oomycetes	4.51E-02
170	GO:0009630: gravitropism	4.73E-02
171	GO:1901657: glycosyl compound metabolic process	4.94E-02
172	GO:0030163: protein catabolic process	4.94E-02
173	GO:0071281: cellular response to iron ion	4.94E-02
174	GO:0010090: trichome morphogenesis	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
5	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
6	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0019843: rRNA binding	3.24E-08
10	GO:0016851: magnesium chelatase activity	4.12E-07
11	GO:0051920: peroxiredoxin activity	8.65E-06
12	GO:0016209: antioxidant activity	2.04E-05
13	GO:0015250: water channel activity	1.61E-04
14	GO:0004130: cytochrome-c peroxidase activity	2.46E-04
15	GO:0016788: hydrolase activity, acting on ester bonds	3.96E-04
16	GO:0030570: pectate lyase activity	4.05E-04
17	GO:0000170: sphingosine hydroxylase activity	4.40E-04
18	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.40E-04
19	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	4.40E-04
20	GO:0003735: structural constituent of ribosome	5.25E-04
21	GO:0051537: 2 iron, 2 sulfur cluster binding	6.32E-04
22	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.10E-04
23	GO:0016762: xyloglucan:xyloglucosyl transferase activity	8.00E-04
24	GO:0004047: aminomethyltransferase activity	9.50E-04
25	GO:0004750: ribulose-phosphate 3-epimerase activity	9.50E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.50E-04
27	GO:0042284: sphingolipid delta-4 desaturase activity	9.50E-04
28	GO:0008967: phosphoglycolate phosphatase activity	9.50E-04
29	GO:0047746: chlorophyllase activity	9.50E-04
30	GO:0016868: intramolecular transferase activity, phosphotransferases	9.50E-04
31	GO:0016168: chlorophyll binding	1.36E-03
32	GO:0004324: ferredoxin-NADP+ reductase activity	1.55E-03
33	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.55E-03
34	GO:0050734: hydroxycinnamoyltransferase activity	1.55E-03
35	GO:0004075: biotin carboxylase activity	1.55E-03
36	GO:0030267: glyoxylate reductase (NADP) activity	1.55E-03
37	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.56E-03
38	GO:0008266: poly(U) RNA binding	1.80E-03
39	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.21E-03
40	GO:0003878: ATP citrate synthase activity	2.24E-03
41	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.24E-03
42	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.24E-03
43	GO:0031409: pigment binding	2.25E-03
44	GO:0005528: FK506 binding	2.49E-03
45	GO:0052689: carboxylic ester hydrolase activity	2.86E-03
46	GO:0010011: auxin binding	3.01E-03
47	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.01E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.01E-03
49	GO:0010328: auxin influx transmembrane transporter activity	3.01E-03
50	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.01E-03
51	GO:0009044: xylan 1,4-beta-xylosidase activity	3.01E-03
52	GO:0046556: alpha-L-arabinofuranosidase activity	3.01E-03
53	GO:0004659: prenyltransferase activity	3.01E-03
54	GO:0008725: DNA-3-methyladenine glycosylase activity	3.85E-03
55	GO:0003959: NADPH dehydrogenase activity	3.85E-03
56	GO:0004040: amidase activity	3.85E-03
57	GO:0003989: acetyl-CoA carboxylase activity	3.85E-03
58	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.77E-03
59	GO:0016688: L-ascorbate peroxidase activity	4.77E-03
60	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.77E-03
61	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	5.75E-03
62	GO:0004602: glutathione peroxidase activity	5.75E-03
63	GO:0004601: peroxidase activity	6.78E-03
64	GO:0016791: phosphatase activity	7.45E-03
65	GO:0004564: beta-fructofuranosidase activity	7.91E-03
66	GO:0004034: aldose 1-epimerase activity	7.91E-03
67	GO:0015078: hydrogen ion transmembrane transporter activity	9.09E-03
68	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.03E-02
69	GO:0000989: transcription factor activity, transcription factor binding	1.03E-02
70	GO:0008236: serine-type peptidase activity	1.11E-02
71	GO:0016829: lyase activity	1.13E-02
72	GO:0004575: sucrose alpha-glucosidase activity	1.16E-02
73	GO:0005381: iron ion transmembrane transporter activity	1.16E-02
74	GO:0005096: GTPase activator activity	1.22E-02
75	GO:0004222: metalloendopeptidase activity	1.29E-02
76	GO:0004805: trehalose-phosphatase activity	1.30E-02
77	GO:0047372: acylglycerol lipase activity	1.44E-02
78	GO:0008378: galactosyltransferase activity	1.58E-02
79	GO:0005262: calcium channel activity	1.73E-02
80	GO:0004565: beta-galactosidase activity	1.73E-02
81	GO:0010329: auxin efflux transmembrane transporter activity	1.73E-02
82	GO:0004089: carbonate dehydratase activity	1.73E-02
83	GO:0031072: heat shock protein binding	1.73E-02
84	GO:0015293: symporter activity	2.15E-02
85	GO:0004176: ATP-dependent peptidase activity	2.73E-02
86	GO:0022891: substrate-specific transmembrane transporter activity	3.10E-02
87	GO:0003756: protein disulfide isomerase activity	3.29E-02
88	GO:0003727: single-stranded RNA binding	3.29E-02
89	GO:0016853: isomerase activity	4.09E-02
90	GO:0005355: glucose transmembrane transporter activity	4.09E-02
91	GO:0050662: coenzyme binding	4.09E-02
92	GO:0048038: quinone binding	4.51E-02
93	GO:0046872: metal ion binding	4.56E-02
94	GO:0004871: signal transducer activity	4.60E-02
95	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.71E-02
96	GO:0004518: nuclease activity	4.73E-02
97	GO:0051015: actin filament binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0009535: chloroplast thylakoid membrane	3.27E-41
4	GO:0009507: chloroplast	4.66E-41
5	GO:0009534: chloroplast thylakoid	1.21E-37
6	GO:0009941: chloroplast envelope	3.52E-24
7	GO:0009570: chloroplast stroma	1.11E-23
8	GO:0009543: chloroplast thylakoid lumen	5.70E-18
9	GO:0009579: thylakoid	2.49E-16
10	GO:0031977: thylakoid lumen	3.84E-10
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.80E-09
12	GO:0048046: apoplast	2.91E-08
13	GO:0010007: magnesium chelatase complex	8.58E-08
14	GO:0030095: chloroplast photosystem II	6.35E-06
15	GO:0010287: plastoglobule	5.73E-05
16	GO:0009523: photosystem II	7.21E-05
17	GO:0031969: chloroplast membrane	1.25E-04
18	GO:0010319: stromule	1.31E-04
19	GO:0009654: photosystem II oxygen evolving complex	2.80E-04
20	GO:0009533: chloroplast stromal thylakoid	4.25E-04
21	GO:0043674: columella	4.40E-04
22	GO:0009515: granal stacked thylakoid	4.40E-04
23	GO:0009522: photosystem I	6.70E-04
24	GO:0005618: cell wall	6.87E-04
25	GO:0019898: extrinsic component of membrane	7.33E-04
26	GO:0016020: membrane	9.30E-04
27	GO:0030093: chloroplast photosystem I	9.50E-04
28	GO:0009505: plant-type cell wall	1.15E-03
29	GO:0009706: chloroplast inner membrane	1.50E-03
30	GO:0030076: light-harvesting complex	2.02E-03
31	GO:0005840: ribosome	2.14E-03
32	GO:0009531: secondary cell wall	2.24E-03
33	GO:0005775: vacuolar lumen	2.24E-03
34	GO:0032432: actin filament bundle	2.24E-03
35	GO:0005960: glycine cleavage complex	2.24E-03
36	GO:0009346: citrate lyase complex	2.24E-03
37	GO:0042651: thylakoid membrane	2.75E-03
38	GO:0009517: PSII associated light-harvesting complex II	3.01E-03
39	GO:0031209: SCAR complex	4.77E-03
40	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.77E-03
41	GO:0042807: central vacuole	6.80E-03
42	GO:0009986: cell surface	6.80E-03
43	GO:0009538: photosystem I reaction center	7.91E-03
44	GO:0005887: integral component of plasma membrane	8.13E-03
45	GO:0016021: integral component of membrane	8.45E-03
46	GO:0008180: COP9 signalosome	1.03E-02
47	GO:0042644: chloroplast nucleoid	1.03E-02
48	GO:0045298: tubulin complex	1.03E-02
49	GO:0005884: actin filament	1.44E-02
50	GO:0000311: plastid large ribosomal subunit	1.58E-02
51	GO:0032040: small-subunit processome	1.58E-02
52	GO:0005576: extracellular region	1.67E-02
53	GO:0009508: plastid chromosome	1.73E-02
54	GO:0015935: small ribosomal subunit	2.73E-02