GO Enrichment Analysis of Co-expressed Genes with
AT5G46420
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 4 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 5 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 6 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 7 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 8 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 9 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 10 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.86E-05 |
| 11 | GO:1902183: regulation of shoot apical meristem development | 1.08E-04 |
| 12 | GO:0010158: abaxial cell fate specification | 1.08E-04 |
| 13 | GO:0008152: metabolic process | 1.44E-04 |
| 14 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.56E-04 |
| 15 | GO:2000021: regulation of ion homeostasis | 3.29E-04 |
| 16 | GO:0043609: regulation of carbon utilization | 3.29E-04 |
| 17 | GO:0010028: xanthophyll cycle | 3.29E-04 |
| 18 | GO:0034337: RNA folding | 3.29E-04 |
| 19 | GO:0010450: inflorescence meristem growth | 3.29E-04 |
| 20 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.29E-04 |
| 21 | GO:0000476: maturation of 4.5S rRNA | 3.29E-04 |
| 22 | GO:0000967: rRNA 5'-end processing | 3.29E-04 |
| 23 | GO:0015808: L-alanine transport | 3.29E-04 |
| 24 | GO:0043266: regulation of potassium ion transport | 3.29E-04 |
| 25 | GO:0010480: microsporocyte differentiation | 3.29E-04 |
| 26 | GO:0031338: regulation of vesicle fusion | 3.29E-04 |
| 27 | GO:0000481: maturation of 5S rRNA | 3.29E-04 |
| 28 | GO:0048507: meristem development | 5.12E-04 |
| 29 | GO:0010206: photosystem II repair | 5.12E-04 |
| 30 | GO:2000024: regulation of leaf development | 5.12E-04 |
| 31 | GO:0098712: L-glutamate import across plasma membrane | 7.18E-04 |
| 32 | GO:0016122: xanthophyll metabolic process | 7.18E-04 |
| 33 | GO:0010270: photosystem II oxygen evolving complex assembly | 7.18E-04 |
| 34 | GO:0015804: neutral amino acid transport | 7.18E-04 |
| 35 | GO:0034470: ncRNA processing | 7.18E-04 |
| 36 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 7.18E-04 |
| 37 | GO:0055129: L-proline biosynthetic process | 7.18E-04 |
| 38 | GO:0009773: photosynthetic electron transport in photosystem I | 8.13E-04 |
| 39 | GO:0090630: activation of GTPase activity | 1.16E-03 |
| 40 | GO:2001295: malonyl-CoA biosynthetic process | 1.16E-03 |
| 41 | GO:0045165: cell fate commitment | 1.16E-03 |
| 42 | GO:0006000: fructose metabolic process | 1.16E-03 |
| 43 | GO:0006518: peptide metabolic process | 1.16E-03 |
| 44 | GO:0043617: cellular response to sucrose starvation | 1.16E-03 |
| 45 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.63E-03 |
| 46 | GO:0046836: glycolipid transport | 1.67E-03 |
| 47 | GO:0051639: actin filament network formation | 1.67E-03 |
| 48 | GO:0080170: hydrogen peroxide transmembrane transport | 1.67E-03 |
| 49 | GO:0009226: nucleotide-sugar biosynthetic process | 1.67E-03 |
| 50 | GO:0061077: chaperone-mediated protein folding | 1.97E-03 |
| 51 | GO:0080092: regulation of pollen tube growth | 2.16E-03 |
| 52 | GO:0051781: positive regulation of cell division | 2.24E-03 |
| 53 | GO:0051764: actin crosslink formation | 2.24E-03 |
| 54 | GO:0045727: positive regulation of translation | 2.24E-03 |
| 55 | GO:0015994: chlorophyll metabolic process | 2.24E-03 |
| 56 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 2.24E-03 |
| 57 | GO:0000304: response to singlet oxygen | 2.87E-03 |
| 58 | GO:0010154: fruit development | 3.23E-03 |
| 59 | GO:0006561: proline biosynthetic process | 3.54E-03 |
| 60 | GO:0006751: glutathione catabolic process | 3.54E-03 |
| 61 | GO:0042549: photosystem II stabilization | 3.54E-03 |
| 62 | GO:0000470: maturation of LSU-rRNA | 3.54E-03 |
| 63 | GO:0006828: manganese ion transport | 3.54E-03 |
| 64 | GO:0000741: karyogamy | 3.54E-03 |
| 65 | GO:0042026: protein refolding | 4.26E-03 |
| 66 | GO:0006458: 'de novo' protein folding | 4.26E-03 |
| 67 | GO:0009942: longitudinal axis specification | 4.26E-03 |
| 68 | GO:0055114: oxidation-reduction process | 4.67E-03 |
| 69 | GO:0043090: amino acid import | 5.03E-03 |
| 70 | GO:0048437: floral organ development | 5.03E-03 |
| 71 | GO:0010196: nonphotochemical quenching | 5.03E-03 |
| 72 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 5.11E-03 |
| 73 | GO:0071805: potassium ion transmembrane transport | 5.13E-03 |
| 74 | GO:0010027: thylakoid membrane organization | 5.76E-03 |
| 75 | GO:0010492: maintenance of shoot apical meristem identity | 5.85E-03 |
| 76 | GO:0008610: lipid biosynthetic process | 5.85E-03 |
| 77 | GO:0032508: DNA duplex unwinding | 5.85E-03 |
| 78 | GO:0045454: cell redox homeostasis | 6.39E-03 |
| 79 | GO:0010093: specification of floral organ identity | 6.71E-03 |
| 80 | GO:0009932: cell tip growth | 6.71E-03 |
| 81 | GO:0006002: fructose 6-phosphate metabolic process | 6.71E-03 |
| 82 | GO:0071482: cellular response to light stimulus | 6.71E-03 |
| 83 | GO:0009657: plastid organization | 6.71E-03 |
| 84 | GO:0032544: plastid translation | 6.71E-03 |
| 85 | GO:0015995: chlorophyll biosynthetic process | 6.79E-03 |
| 86 | GO:0009817: defense response to fungus, incompatible interaction | 7.52E-03 |
| 87 | GO:0000373: Group II intron splicing | 7.60E-03 |
| 88 | GO:0046685: response to arsenic-containing substance | 7.60E-03 |
| 89 | GO:0006098: pentose-phosphate shunt | 7.60E-03 |
| 90 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 7.60E-03 |
| 91 | GO:0006779: porphyrin-containing compound biosynthetic process | 8.55E-03 |
| 92 | GO:1900865: chloroplast RNA modification | 8.55E-03 |
| 93 | GO:0045036: protein targeting to chloroplast | 9.53E-03 |
| 94 | GO:0006782: protoporphyrinogen IX biosynthetic process | 9.53E-03 |
| 95 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.06E-02 |
| 96 | GO:0048229: gametophyte development | 1.06E-02 |
| 97 | GO:0006816: calcium ion transport | 1.06E-02 |
| 98 | GO:0006415: translational termination | 1.06E-02 |
| 99 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.06E-02 |
| 100 | GO:0018107: peptidyl-threonine phosphorylation | 1.27E-02 |
| 101 | GO:0010075: regulation of meristem growth | 1.27E-02 |
| 102 | GO:0006094: gluconeogenesis | 1.27E-02 |
| 103 | GO:0009767: photosynthetic electron transport chain | 1.27E-02 |
| 104 | GO:0010102: lateral root morphogenesis | 1.27E-02 |
| 105 | GO:0009934: regulation of meristem structural organization | 1.38E-02 |
| 106 | GO:0009933: meristem structural organization | 1.38E-02 |
| 107 | GO:0010207: photosystem II assembly | 1.38E-02 |
| 108 | GO:0006810: transport | 1.44E-02 |
| 109 | GO:0010030: positive regulation of seed germination | 1.50E-02 |
| 110 | GO:0010053: root epidermal cell differentiation | 1.50E-02 |
| 111 | GO:0005975: carbohydrate metabolic process | 1.53E-02 |
| 112 | GO:0042538: hyperosmotic salinity response | 1.55E-02 |
| 113 | GO:0006833: water transport | 1.62E-02 |
| 114 | GO:0006813: potassium ion transport | 1.67E-02 |
| 115 | GO:0007010: cytoskeleton organization | 1.75E-02 |
| 116 | GO:0051017: actin filament bundle assembly | 1.75E-02 |
| 117 | GO:0009723: response to ethylene | 1.86E-02 |
| 118 | GO:0016575: histone deacetylation | 1.87E-02 |
| 119 | GO:0006418: tRNA aminoacylation for protein translation | 1.87E-02 |
| 120 | GO:0006096: glycolytic process | 1.97E-02 |
| 121 | GO:0031408: oxylipin biosynthetic process | 2.00E-02 |
| 122 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.14E-02 |
| 123 | GO:0046777: protein autophosphorylation | 2.20E-02 |
| 124 | GO:0009686: gibberellin biosynthetic process | 2.27E-02 |
| 125 | GO:0009306: protein secretion | 2.41E-02 |
| 126 | GO:0018105: peptidyl-serine phosphorylation | 2.45E-02 |
| 127 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.55E-02 |
| 128 | GO:0034220: ion transmembrane transport | 2.70E-02 |
| 129 | GO:0010051: xylem and phloem pattern formation | 2.70E-02 |
| 130 | GO:0048653: anther development | 2.70E-02 |
| 131 | GO:0042631: cellular response to water deprivation | 2.70E-02 |
| 132 | GO:0010197: polar nucleus fusion | 2.85E-02 |
| 133 | GO:0048868: pollen tube development | 2.85E-02 |
| 134 | GO:0010268: brassinosteroid homeostasis | 2.85E-02 |
| 135 | GO:0010305: leaf vascular tissue pattern formation | 2.85E-02 |
| 136 | GO:0006662: glycerol ether metabolic process | 2.85E-02 |
| 137 | GO:0009646: response to absence of light | 3.00E-02 |
| 138 | GO:0009791: post-embryonic development | 3.15E-02 |
| 139 | GO:0016132: brassinosteroid biosynthetic process | 3.31E-02 |
| 140 | GO:0080156: mitochondrial mRNA modification | 3.31E-02 |
| 141 | GO:0071554: cell wall organization or biogenesis | 3.31E-02 |
| 142 | GO:0002229: defense response to oomycetes | 3.31E-02 |
| 143 | GO:0016032: viral process | 3.47E-02 |
| 144 | GO:1901657: glycosyl compound metabolic process | 3.63E-02 |
| 145 | GO:0030163: protein catabolic process | 3.63E-02 |
| 146 | GO:0071281: cellular response to iron ion | 3.63E-02 |
| 147 | GO:0006633: fatty acid biosynthetic process | 3.74E-02 |
| 148 | GO:0016125: sterol metabolic process | 3.79E-02 |
| 149 | GO:0016126: sterol biosynthetic process | 4.30E-02 |
| 150 | GO:0001666: response to hypoxia | 4.30E-02 |
| 151 | GO:0009816: defense response to bacterium, incompatible interaction | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 4 | GO:0047513: 1,2-alpha-L-fucosidase activity | 0.00E+00 |
| 5 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 6 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 7 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 8 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 9 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 10 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 11 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 12 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 13 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 14 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 15 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 16 | GO:0005528: FK506 binding | 5.33E-06 |
| 17 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.74E-05 |
| 18 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.94E-05 |
| 19 | GO:0051861: glycolipid binding | 6.89E-05 |
| 20 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 6.89E-05 |
| 21 | GO:0030941: chloroplast targeting sequence binding | 3.29E-04 |
| 22 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 3.29E-04 |
| 23 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.29E-04 |
| 24 | GO:0015194: L-serine transmembrane transporter activity | 3.29E-04 |
| 25 | GO:0004349: glutamate 5-kinase activity | 3.29E-04 |
| 26 | GO:0004350: glutamate-5-semialdehyde dehydrogenase activity | 3.29E-04 |
| 27 | GO:0003867: 4-aminobutyrate transaminase activity | 3.29E-04 |
| 28 | GO:0051777: ent-kaurenoate oxidase activity | 3.29E-04 |
| 29 | GO:0004856: xylulokinase activity | 3.29E-04 |
| 30 | GO:0004163: diphosphomevalonate decarboxylase activity | 3.29E-04 |
| 31 | GO:0004033: aldo-keto reductase (NADP) activity | 3.48E-04 |
| 32 | GO:0016787: hydrolase activity | 5.15E-04 |
| 33 | GO:0016868: intramolecular transferase activity, phosphotransferases | 7.18E-04 |
| 34 | GO:0003839: gamma-glutamylcyclotransferase activity | 7.18E-04 |
| 35 | GO:0005094: Rho GDP-dissociation inhibitor activity | 7.18E-04 |
| 36 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 7.18E-04 |
| 37 | GO:0004802: transketolase activity | 7.18E-04 |
| 38 | GO:0015180: L-alanine transmembrane transporter activity | 7.18E-04 |
| 39 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 8.13E-04 |
| 40 | GO:0030267: glyoxylate reductase (NADP) activity | 1.16E-03 |
| 41 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 1.16E-03 |
| 42 | GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity | 1.16E-03 |
| 43 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 1.16E-03 |
| 44 | GO:0002161: aminoacyl-tRNA editing activity | 1.16E-03 |
| 45 | GO:0015193: L-proline transmembrane transporter activity | 1.16E-03 |
| 46 | GO:0004075: biotin carboxylase activity | 1.16E-03 |
| 47 | GO:0016491: oxidoreductase activity | 1.30E-03 |
| 48 | GO:0017089: glycolipid transporter activity | 1.67E-03 |
| 49 | GO:0015186: L-glutamine transmembrane transporter activity | 1.67E-03 |
| 50 | GO:0019201: nucleotide kinase activity | 1.67E-03 |
| 51 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.67E-03 |
| 52 | GO:0048487: beta-tubulin binding | 1.67E-03 |
| 53 | GO:0016149: translation release factor activity, codon specific | 1.67E-03 |
| 54 | GO:0015079: potassium ion transmembrane transporter activity | 1.80E-03 |
| 55 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 2.24E-03 |
| 56 | GO:0008453: alanine-glyoxylate transaminase activity | 2.24E-03 |
| 57 | GO:0005313: L-glutamate transmembrane transporter activity | 2.24E-03 |
| 58 | GO:0003989: acetyl-CoA carboxylase activity | 2.87E-03 |
| 59 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.87E-03 |
| 60 | GO:0017137: Rab GTPase binding | 2.87E-03 |
| 61 | GO:2001070: starch binding | 3.54E-03 |
| 62 | GO:0004332: fructose-bisphosphate aldolase activity | 3.54E-03 |
| 63 | GO:0042578: phosphoric ester hydrolase activity | 3.54E-03 |
| 64 | GO:0048038: quinone binding | 3.98E-03 |
| 65 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.26E-03 |
| 66 | GO:0004017: adenylate kinase activity | 4.26E-03 |
| 67 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 4.26E-03 |
| 68 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 4.26E-03 |
| 69 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 6.71E-03 |
| 70 | GO:0008236: serine-type peptidase activity | 7.15E-03 |
| 71 | GO:0003747: translation release factor activity | 7.60E-03 |
| 72 | GO:0005096: GTPase activator activity | 7.91E-03 |
| 73 | GO:0016301: kinase activity | 8.39E-03 |
| 74 | GO:0047617: acyl-CoA hydrolase activity | 8.55E-03 |
| 75 | GO:0005384: manganese ion transmembrane transporter activity | 8.55E-03 |
| 76 | GO:0044183: protein binding involved in protein folding | 1.06E-02 |
| 77 | GO:0000049: tRNA binding | 1.16E-02 |
| 78 | GO:0042802: identical protein binding | 1.20E-02 |
| 79 | GO:0015095: magnesium ion transmembrane transporter activity | 1.27E-02 |
| 80 | GO:0004565: beta-galactosidase activity | 1.27E-02 |
| 81 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.27E-02 |
| 82 | GO:0008266: poly(U) RNA binding | 1.38E-02 |
| 83 | GO:0005524: ATP binding | 1.49E-02 |
| 84 | GO:0004407: histone deacetylase activity | 1.75E-02 |
| 85 | GO:0003714: transcription corepressor activity | 1.75E-02 |
| 86 | GO:0033612: receptor serine/threonine kinase binding | 2.00E-02 |
| 87 | GO:0047134: protein-disulfide reductase activity | 2.55E-02 |
| 88 | GO:0004812: aminoacyl-tRNA ligase activity | 2.55E-02 |
| 89 | GO:0004674: protein serine/threonine kinase activity | 2.80E-02 |
| 90 | GO:0019843: rRNA binding | 2.98E-02 |
| 91 | GO:0004791: thioredoxin-disulfide reductase activity | 3.00E-02 |
| 92 | GO:0050662: coenzyme binding | 3.00E-02 |
| 93 | GO:0004252: serine-type endopeptidase activity | 3.30E-02 |
| 94 | GO:0004518: nuclease activity | 3.47E-02 |
| 95 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.63E-02 |
| 96 | GO:0051015: actin filament binding | 3.63E-02 |
| 97 | GO:0016413: O-acetyltransferase activity | 4.13E-02 |
| 98 | GO:0015250: water channel activity | 4.30E-02 |
| 99 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 4.65E-02 |
| 100 | GO:0004683: calmodulin-dependent protein kinase activity | 4.82E-02 |
| 101 | GO:0102483: scopolin beta-glucosidase activity | 4.82E-02 |
| 102 | GO:0004721: phosphoprotein phosphatase activity | 4.82E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009571: proplastid stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.66E-30 |
| 3 | GO:0009570: chloroplast stroma | 5.45E-19 |
| 4 | GO:0009534: chloroplast thylakoid | 3.77E-12 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 1.16E-11 |
| 6 | GO:0009941: chloroplast envelope | 9.67E-10 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 4.77E-09 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.98E-05 |
| 9 | GO:0031977: thylakoid lumen | 2.26E-05 |
| 10 | GO:0009579: thylakoid | 3.35E-05 |
| 11 | GO:0009344: nitrite reductase complex [NAD(P)H] | 3.29E-04 |
| 12 | GO:0010287: plastoglobule | 1.02E-03 |
| 13 | GO:0030095: chloroplast photosystem II | 1.18E-03 |
| 14 | GO:0032432: actin filament bundle | 1.67E-03 |
| 15 | GO:0042651: thylakoid membrane | 1.80E-03 |
| 16 | GO:0031359: integral component of chloroplast outer membrane | 5.03E-03 |
| 17 | GO:0009533: chloroplast stromal thylakoid | 5.03E-03 |
| 18 | GO:0016324: apical plasma membrane | 9.53E-03 |
| 19 | GO:0005884: actin filament | 1.06E-02 |
| 20 | GO:0032040: small-subunit processome | 1.16E-02 |
| 21 | GO:0009508: plastid chromosome | 1.27E-02 |
| 22 | GO:0043234: protein complex | 1.62E-02 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 1.87E-02 |
| 24 | GO:0009532: plastid stroma | 2.00E-02 |
| 25 | GO:0031969: chloroplast membrane | 2.02E-02 |
| 26 | GO:0019898: extrinsic component of membrane | 3.15E-02 |
| 27 | GO:0005759: mitochondrial matrix | 3.74E-02 |
| 28 | GO:0009295: nucleoid | 3.96E-02 |
| 29 | GO:0030529: intracellular ribonucleoprotein complex | 4.30E-02 |