GO Enrichment Analysis of Co-expressed Genes with
AT5G46290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 2 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.60E-07 |
| 5 | GO:0015995: chlorophyll biosynthetic process | 2.70E-07 |
| 6 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.04E-06 |
| 7 | GO:0009657: plastid organization | 1.85E-05 |
| 8 | GO:0006783: heme biosynthetic process | 2.33E-05 |
| 9 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.88E-05 |
| 10 | GO:0006436: tryptophanyl-tRNA aminoacylation | 4.18E-05 |
| 11 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.04E-04 |
| 12 | GO:2000071: regulation of defense response by callose deposition | 1.04E-04 |
| 13 | GO:0006418: tRNA aminoacylation for protein translation | 1.07E-04 |
| 14 | GO:0009735: response to cytokinin | 2.35E-04 |
| 15 | GO:0006986: response to unfolded protein | 2.63E-04 |
| 16 | GO:0044205: 'de novo' UMP biosynthetic process | 3.53E-04 |
| 17 | GO:0006221: pyrimidine nucleotide biosynthetic process | 3.53E-04 |
| 18 | GO:0006796: phosphate-containing compound metabolic process | 5.51E-04 |
| 19 | GO:0010190: cytochrome b6f complex assembly | 5.51E-04 |
| 20 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 5.51E-04 |
| 21 | GO:0017148: negative regulation of translation | 6.58E-04 |
| 22 | GO:0042026: protein refolding | 6.58E-04 |
| 23 | GO:1901259: chloroplast rRNA processing | 6.58E-04 |
| 24 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 7.69E-04 |
| 25 | GO:0042742: defense response to bacterium | 8.10E-04 |
| 26 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 8.84E-04 |
| 27 | GO:1900865: chloroplast RNA modification | 1.25E-03 |
| 28 | GO:0031425: chloroplast RNA processing | 1.25E-03 |
| 29 | GO:0045036: protein targeting to chloroplast | 1.39E-03 |
| 30 | GO:0009682: induced systemic resistance | 1.53E-03 |
| 31 | GO:0006457: protein folding | 2.58E-03 |
| 32 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.97E-03 |
| 33 | GO:0007005: mitochondrion organization | 2.97E-03 |
| 34 | GO:0010118: stomatal movement | 3.71E-03 |
| 35 | GO:0006662: glycerol ether metabolic process | 3.91E-03 |
| 36 | GO:0002229: defense response to oomycetes | 4.51E-03 |
| 37 | GO:0015979: photosynthesis | 5.25E-03 |
| 38 | GO:0009627: systemic acquired resistance | 6.27E-03 |
| 39 | GO:0048481: plant ovule development | 6.98E-03 |
| 40 | GO:0008219: cell death | 6.98E-03 |
| 41 | GO:0009867: jasmonic acid mediated signaling pathway | 8.23E-03 |
| 42 | GO:0034599: cellular response to oxidative stress | 8.48E-03 |
| 43 | GO:0031347: regulation of defense response | 1.12E-02 |
| 44 | GO:0006096: glycolytic process | 1.36E-02 |
| 45 | GO:0009620: response to fungus | 1.46E-02 |
| 46 | GO:0051726: regulation of cell cycle | 1.62E-02 |
| 47 | GO:0009742: brassinosteroid mediated signaling pathway | 1.62E-02 |
| 48 | GO:0009790: embryo development | 2.03E-02 |
| 49 | GO:0006633: fatty acid biosynthetic process | 2.14E-02 |
| 50 | GO:0006413: translational initiation | 2.18E-02 |
| 51 | GO:0007166: cell surface receptor signaling pathway | 2.52E-02 |
| 52 | GO:0009658: chloroplast organization | 3.13E-02 |
| 53 | GO:0009409: response to cold | 3.32E-02 |
| 54 | GO:0007049: cell cycle | 3.38E-02 |
| 55 | GO:0048366: leaf development | 3.52E-02 |
| 56 | GO:0045454: cell redox homeostasis | 4.15E-02 |
| 57 | GO:0032259: methylation | 4.67E-02 |
| 58 | GO:0006397: mRNA processing | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 3 | GO:0016851: magnesium chelatase activity | 1.04E-06 |
| 4 | GO:0004830: tryptophan-tRNA ligase activity | 4.18E-05 |
| 5 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 4.18E-05 |
| 6 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 4.18E-05 |
| 7 | GO:0004853: uroporphyrinogen decarboxylase activity | 4.18E-05 |
| 8 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 4.18E-05 |
| 9 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.04E-04 |
| 10 | GO:0051087: chaperone binding | 1.07E-04 |
| 11 | GO:0051082: unfolded protein binding | 1.13E-04 |
| 12 | GO:0004812: aminoacyl-tRNA ligase activity | 1.73E-04 |
| 13 | GO:0043023: ribosomal large subunit binding | 2.63E-04 |
| 14 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 2.63E-04 |
| 15 | GO:0016462: pyrophosphatase activity | 5.51E-04 |
| 16 | GO:0004427: inorganic diphosphatase activity | 7.69E-04 |
| 17 | GO:0044183: protein binding involved in protein folding | 1.53E-03 |
| 18 | GO:0000049: tRNA binding | 1.67E-03 |
| 19 | GO:0004176: ATP-dependent peptidase activity | 2.80E-03 |
| 20 | GO:0047134: protein-disulfide reductase activity | 3.52E-03 |
| 21 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 3.91E-03 |
| 22 | GO:0004791: thioredoxin-disulfide reductase activity | 4.11E-03 |
| 23 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.93E-03 |
| 24 | GO:0008483: transaminase activity | 5.36E-03 |
| 25 | GO:0008237: metallopeptidase activity | 5.36E-03 |
| 26 | GO:0042803: protein homodimerization activity | 5.77E-03 |
| 27 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.98E-03 |
| 28 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 7.47E-03 |
| 29 | GO:0003746: translation elongation factor activity | 8.23E-03 |
| 30 | GO:0016887: ATPase activity | 1.05E-02 |
| 31 | GO:0015035: protein disulfide oxidoreductase activity | 1.59E-02 |
| 32 | GO:0005507: copper ion binding | 1.72E-02 |
| 33 | GO:0030170: pyridoxal phosphate binding | 1.96E-02 |
| 34 | GO:0005525: GTP binding | 1.99E-02 |
| 35 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.18E-02 |
| 36 | GO:0003743: translation initiation factor activity | 2.56E-02 |
| 37 | GO:0042802: identical protein binding | 2.72E-02 |
| 38 | GO:0008168: methyltransferase activity | 3.05E-02 |
| 39 | GO:0000287: magnesium ion binding | 3.09E-02 |
| 40 | GO:0004601: peroxidase activity | 3.13E-02 |
| 41 | GO:0003729: mRNA binding | 3.64E-02 |
| 42 | GO:0003924: GTPase activity | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.30E-30 |
| 2 | GO:0009570: chloroplast stroma | 2.61E-18 |
| 3 | GO:0009941: chloroplast envelope | 2.84E-15 |
| 4 | GO:0009579: thylakoid | 4.66E-09 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 9.48E-05 |
| 6 | GO:0010007: magnesium chelatase complex | 1.78E-04 |
| 7 | GO:0009536: plastid | 1.10E-03 |
| 8 | GO:0005759: mitochondrial matrix | 2.21E-03 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 2.62E-03 |
| 10 | GO:0019898: extrinsic component of membrane | 4.31E-03 |
| 11 | GO:0016592: mediator complex | 4.72E-03 |
| 12 | GO:0010319: stromule | 5.36E-03 |
| 13 | GO:0009295: nucleoid | 5.36E-03 |
| 14 | GO:0030529: intracellular ribonucleoprotein complex | 5.81E-03 |
| 15 | GO:0009707: chloroplast outer membrane | 6.98E-03 |
| 16 | GO:0031977: thylakoid lumen | 9.28E-03 |
| 17 | GO:0022626: cytosolic ribosome | 1.15E-02 |
| 18 | GO:0009706: chloroplast inner membrane | 1.55E-02 |
| 19 | GO:0009543: chloroplast thylakoid lumen | 1.82E-02 |
| 20 | GO:0005623: cell | 1.86E-02 |