Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
6GO:0090042: tubulin deacetylation0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:0090706: specification of plant organ position0.00E+00
10GO:0045014: negative regulation of transcription by glucose0.00E+00
11GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
12GO:0006000: fructose metabolic process8.29E-08
13GO:0071482: cellular response to light stimulus4.92E-07
14GO:0010206: photosystem II repair7.82E-07
15GO:0015994: chlorophyll metabolic process1.15E-06
16GO:0010205: photoinhibition1.19E-06
17GO:0009773: photosynthetic electron transport in photosystem I2.48E-06
18GO:0015979: photosynthesis3.49E-06
19GO:0006094: gluconeogenesis4.62E-06
20GO:0042549: photosystem II stabilization4.89E-06
21GO:0034755: iron ion transmembrane transport8.37E-06
22GO:0016122: xanthophyll metabolic process8.37E-06
23GO:0030388: fructose 1,6-bisphosphate metabolic process8.37E-06
24GO:0006002: fructose 6-phosphate metabolic process2.81E-05
25GO:0048507: meristem development3.84E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly6.26E-05
27GO:0008152: metabolic process8.61E-05
28GO:0006546: glycine catabolic process1.10E-04
29GO:0010207: photosystem II assembly1.49E-04
30GO:0016120: carotene biosynthetic process1.69E-04
31GO:0009913: epidermal cell differentiation2.41E-04
32GO:0019646: aerobic electron transport chain4.34E-04
33GO:0030974: thiamine pyrophosphate transport4.34E-04
34GO:0043953: protein transport by the Tat complex4.34E-04
35GO:0043266: regulation of potassium ion transport4.34E-04
36GO:0006824: cobalt ion transport4.34E-04
37GO:0010480: microsporocyte differentiation4.34E-04
38GO:0031338: regulation of vesicle fusion4.34E-04
39GO:0000481: maturation of 5S rRNA4.34E-04
40GO:0065002: intracellular protein transmembrane transport4.34E-04
41GO:2000021: regulation of ion homeostasis4.34E-04
42GO:0043609: regulation of carbon utilization4.34E-04
43GO:0010028: xanthophyll cycle4.34E-04
44GO:0034337: RNA folding4.34E-04
45GO:0010450: inflorescence meristem growth4.34E-04
46GO:0015969: guanosine tetraphosphate metabolic process4.34E-04
47GO:0000476: maturation of 4.5S rRNA4.34E-04
48GO:0051180: vitamin transport4.34E-04
49GO:0000967: rRNA 5'-end processing4.34E-04
50GO:0009644: response to high light intensity6.14E-04
51GO:1900871: chloroplast mRNA modification9.39E-04
52GO:0015893: drug transport9.39E-04
53GO:0010270: photosystem II oxygen evolving complex assembly9.39E-04
54GO:0034470: ncRNA processing9.39E-04
55GO:0035304: regulation of protein dephosphorylation9.39E-04
56GO:0009915: phloem sucrose loading9.39E-04
57GO:0006535: cysteine biosynthetic process from serine1.05E-03
58GO:0006096: glycolytic process1.10E-03
59GO:0010027: thylakoid membrane organization1.24E-03
60GO:0005983: starch catabolic process1.38E-03
61GO:0015995: chlorophyll biosynthetic process1.52E-03
62GO:0006518: peptide metabolic process1.53E-03
63GO:0006013: mannose metabolic process1.53E-03
64GO:0090630: activation of GTPase activity1.53E-03
65GO:0016050: vesicle organization1.53E-03
66GO:0045165: cell fate commitment1.53E-03
67GO:0009718: anthocyanin-containing compound biosynthetic process1.56E-03
68GO:0005986: sucrose biosynthetic process1.56E-03
69GO:0006810: transport1.65E-03
70GO:0019253: reductive pentose-phosphate cycle1.76E-03
71GO:1901332: negative regulation of lateral root development2.21E-03
72GO:0006636: unsaturated fatty acid biosynthetic process2.21E-03
73GO:0046836: glycolipid transport2.21E-03
74GO:0009067: aspartate family amino acid biosynthetic process2.21E-03
75GO:0051639: actin filament network formation2.21E-03
76GO:0080170: hydrogen peroxide transmembrane transport2.21E-03
77GO:0019344: cysteine biosynthetic process2.45E-03
78GO:0010021: amylopectin biosynthetic process2.97E-03
79GO:0010023: proanthocyanidin biosynthetic process2.97E-03
80GO:0051764: actin crosslink formation2.97E-03
81GO:0019464: glycine decarboxylation via glycine cleavage system2.97E-03
82GO:0061077: chaperone-mediated protein folding2.97E-03
83GO:0045727: positive regulation of translation2.97E-03
84GO:0007623: circadian rhythm3.38E-03
85GO:0048497: maintenance of floral organ identity3.80E-03
86GO:0006461: protein complex assembly3.80E-03
87GO:1902183: regulation of shoot apical meristem development3.80E-03
88GO:0010158: abaxial cell fate specification3.80E-03
89GO:0055114: oxidation-reduction process4.00E-03
90GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.71E-03
91GO:0006828: manganese ion transport4.71E-03
92GO:0000741: karyogamy4.71E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process4.71E-03
94GO:0010256: endomembrane system organization4.71E-03
95GO:0000470: maturation of LSU-rRNA4.71E-03
96GO:0006364: rRNA processing4.75E-03
97GO:0010305: leaf vascular tissue pattern formation4.87E-03
98GO:0048825: cotyledon development5.63E-03
99GO:0019252: starch biosynthetic process5.63E-03
100GO:0042026: protein refolding5.68E-03
101GO:0006458: 'de novo' protein folding5.68E-03
102GO:0009942: longitudinal axis specification5.68E-03
103GO:0010189: vitamin E biosynthetic process5.68E-03
104GO:0009854: oxidative photosynthetic carbon pathway5.68E-03
105GO:0009088: threonine biosynthetic process5.68E-03
106GO:0042372: phylloquinone biosynthetic process5.68E-03
107GO:0048437: floral organ development6.71E-03
108GO:0010196: nonphotochemical quenching6.71E-03
109GO:1900057: positive regulation of leaf senescence6.71E-03
110GO:0009645: response to low light intensity stimulus6.71E-03
111GO:0009772: photosynthetic electron transport in photosystem II6.71E-03
112GO:1900056: negative regulation of leaf senescence6.71E-03
113GO:0030163: protein catabolic process6.87E-03
114GO:0009850: auxin metabolic process7.81E-03
115GO:0032508: DNA duplex unwinding7.81E-03
116GO:0010492: maintenance of shoot apical meristem identity7.81E-03
117GO:0048564: photosystem I assembly7.81E-03
118GO:0030091: protein repair7.81E-03
119GO:0005978: glycogen biosynthetic process7.81E-03
120GO:0009723: response to ethylene8.22E-03
121GO:0016126: sterol biosynthetic process8.74E-03
122GO:0009657: plastid organization8.97E-03
123GO:0032544: plastid translation8.97E-03
124GO:0010093: specification of floral organ identity8.97E-03
125GO:0009932: cell tip growth8.97E-03
126GO:0042128: nitrate assimilation9.77E-03
127GO:2000024: regulation of leaf development1.02E-02
128GO:0000373: Group II intron splicing1.02E-02
129GO:0048589: developmental growth1.02E-02
130GO:0009051: pentose-phosphate shunt, oxidative branch1.02E-02
131GO:0090305: nucleic acid phosphodiester bond hydrolysis1.02E-02
132GO:0006098: pentose-phosphate shunt1.02E-02
133GO:0009735: response to cytokinin1.07E-02
134GO:0018298: protein-chromophore linkage1.14E-02
135GO:0010380: regulation of chlorophyll biosynthetic process1.15E-02
136GO:0006779: porphyrin-containing compound biosynthetic process1.15E-02
137GO:0006782: protoporphyrinogen IX biosynthetic process1.28E-02
138GO:0009910: negative regulation of flower development1.32E-02
139GO:0046686: response to cadmium ion1.39E-02
140GO:0006879: cellular iron ion homeostasis1.42E-02
141GO:0009750: response to fructose1.42E-02
142GO:0018119: peptidyl-cysteine S-nitrosylation1.42E-02
143GO:0048229: gametophyte development1.42E-02
144GO:0019684: photosynthesis, light reaction1.42E-02
145GO:0006816: calcium ion transport1.42E-02
146GO:0009089: lysine biosynthetic process via diaminopimelate1.42E-02
147GO:0009853: photorespiration1.45E-02
148GO:0006979: response to oxidative stress1.55E-02
149GO:0010152: pollen maturation1.56E-02
150GO:0010102: lateral root morphogenesis1.71E-02
151GO:0006006: glucose metabolic process1.71E-02
152GO:0010075: regulation of meristem growth1.71E-02
153GO:0009767: photosynthetic electron transport chain1.71E-02
154GO:0006631: fatty acid metabolic process1.73E-02
155GO:0009933: meristem structural organization1.86E-02
156GO:0009266: response to temperature stimulus1.86E-02
157GO:0009934: regulation of meristem structural organization1.86E-02
158GO:0009733: response to auxin1.91E-02
159GO:0005985: sucrose metabolic process2.02E-02
160GO:0010053: root epidermal cell differentiation2.02E-02
161GO:0006833: water transport2.18E-02
162GO:0051017: actin filament bundle assembly2.35E-02
163GO:0009944: polarity specification of adaxial/abaxial axis2.35E-02
164GO:0009768: photosynthesis, light harvesting in photosystem I2.52E-02
165GO:0016575: histone deacetylation2.52E-02
166GO:0006418: tRNA aminoacylation for protein translation2.52E-02
167GO:0009658: chloroplast organization2.61E-02
168GO:0042254: ribosome biogenesis2.67E-02
169GO:0009409: response to cold2.71E-02
170GO:0071369: cellular response to ethylene stimulus3.06E-02
171GO:0048443: stamen development3.25E-02
172GO:0016117: carotenoid biosynthetic process3.44E-02
173GO:0034220: ion transmembrane transport3.63E-02
174GO:0010051: xylem and phloem pattern formation3.63E-02
175GO:0048653: anther development3.63E-02
176GO:0042631: cellular response to water deprivation3.63E-02
177GO:0010154: fruit development3.83E-02
178GO:0010197: polar nucleus fusion3.83E-02
179GO:0045454: cell redox homeostasis4.25E-02
180GO:0010193: response to ozone4.45E-02
181GO:0016032: viral process4.66E-02
182GO:0009845: seed germination4.86E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
4GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
5GO:0009976: tocopherol cyclase activity0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004760: serine-pyruvate transaminase activity0.00E+00
12GO:0008465: glycerate dehydrogenase activity0.00E+00
13GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
16GO:0050281: serine-glyoxylate transaminase activity0.00E+00
17GO:0045436: lycopene beta cyclase activity0.00E+00
18GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
19GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
20GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
21GO:0046422: violaxanthin de-epoxidase activity0.00E+00
22GO:0005528: FK506 binding1.12E-10
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.32E-07
24GO:0050017: L-3-cyanoalanine synthase activity8.37E-06
25GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.37E-06
26GO:0016787: hydrolase activity1.52E-05
27GO:0004506: squalene monooxygenase activity1.10E-04
28GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.10E-04
29GO:0008266: poly(U) RNA binding1.49E-04
30GO:2001070: starch binding2.41E-04
31GO:0004332: fructose-bisphosphate aldolase activity2.41E-04
32GO:0004124: cysteine synthase activity3.24E-04
33GO:0050308: sugar-phosphatase activity4.34E-04
34GO:0010242: oxygen evolving activity4.34E-04
35GO:0019203: carbohydrate phosphatase activity4.34E-04
36GO:0045485: omega-6 fatty acid desaturase activity4.34E-04
37GO:0050139: nicotinate-N-glucosyltransferase activity4.34E-04
38GO:0090422: thiamine pyrophosphate transporter activity4.34E-04
39GO:0004856: xylulokinase activity4.34E-04
40GO:0052638: indole-3-butyrate beta-glucosyltransferase activity4.34E-04
41GO:0005381: iron ion transmembrane transporter activity8.99E-04
42GO:0019172: glyoxalase III activity9.39E-04
43GO:0008728: GTP diphosphokinase activity9.39E-04
44GO:0047746: chlorophyllase activity9.39E-04
45GO:0016868: intramolecular transferase activity, phosphotransferases9.39E-04
46GO:0004618: phosphoglycerate kinase activity9.39E-04
47GO:0005094: Rho GDP-dissociation inhibitor activity9.39E-04
48GO:0009977: proton motive force dependent protein transmembrane transporter activity9.39E-04
49GO:0004047: aminomethyltransferase activity9.39E-04
50GO:0033201: alpha-1,4-glucan synthase activity9.39E-04
51GO:0004312: fatty acid synthase activity9.39E-04
52GO:0002161: aminoacyl-tRNA editing activity1.53E-03
53GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.53E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.53E-03
55GO:0030267: glyoxylate reductase (NADP) activity1.53E-03
56GO:0016805: dipeptidase activity1.53E-03
57GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.53E-03
58GO:0004180: carboxypeptidase activity1.53E-03
59GO:0004373: glycogen (starch) synthase activity1.53E-03
60GO:0005096: GTPase activator activity1.85E-03
61GO:0048487: beta-tubulin binding2.21E-03
62GO:0017089: glycolipid transporter activity2.21E-03
63GO:0004072: aspartate kinase activity2.21E-03
64GO:0004375: glycine dehydrogenase (decarboxylating) activity2.21E-03
65GO:0019201: nucleotide kinase activity2.21E-03
66GO:0003954: NADH dehydrogenase activity2.45E-03
67GO:0015079: potassium ion transmembrane transporter activity2.70E-03
68GO:0008878: glucose-1-phosphate adenylyltransferase activity2.97E-03
69GO:0004176: ATP-dependent peptidase activity2.97E-03
70GO:0010011: auxin binding2.97E-03
71GO:0004345: glucose-6-phosphate dehydrogenase activity2.97E-03
72GO:0051861: glycolipid binding2.97E-03
73GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.97E-03
74GO:0008453: alanine-glyoxylate transaminase activity2.97E-03
75GO:0009011: starch synthase activity2.97E-03
76GO:0016773: phosphotransferase activity, alcohol group as acceptor3.80E-03
77GO:0017137: Rab GTPase binding3.80E-03
78GO:0004462: lactoylglutathione lyase activity4.71E-03
79GO:0042578: phosphoric ester hydrolase activity4.71E-03
80GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.68E-03
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.68E-03
82GO:0004559: alpha-mannosidase activity5.68E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.68E-03
84GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.68E-03
85GO:0004017: adenylate kinase activity5.68E-03
86GO:0048038: quinone binding6.03E-03
87GO:0008483: transaminase activity7.77E-03
88GO:0043022: ribosome binding7.81E-03
89GO:0050660: flavin adenine dinucleotide binding8.22E-03
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.97E-03
91GO:0016168: chlorophyll binding9.24E-03
92GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.02E-02
93GO:0008236: serine-type peptidase activity1.09E-02
94GO:0005384: manganese ion transmembrane transporter activity1.15E-02
95GO:0004222: metalloendopeptidase activity1.26E-02
96GO:0005509: calcium ion binding1.31E-02
97GO:0015386: potassium:proton antiporter activity1.42E-02
98GO:0044183: protein binding involved in protein folding1.42E-02
99GO:0000049: tRNA binding1.56E-02
100GO:0004565: beta-galactosidase activity1.71E-02
101GO:0008081: phosphoric diester hydrolase activity1.71E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity1.71E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.71E-02
104GO:0031072: heat shock protein binding1.71E-02
105GO:0005215: transporter activity1.86E-02
106GO:0042802: identical protein binding2.03E-02
107GO:0031409: pigment binding2.18E-02
108GO:0004407: histone deacetylase activity2.35E-02
109GO:0046872: metal ion binding2.56E-02
110GO:0016491: oxidoreductase activity2.58E-02
111GO:0033612: receptor serine/threonine kinase binding2.70E-02
112GO:0022891: substrate-specific transmembrane transporter activity3.06E-02
113GO:0003756: protein disulfide isomerase activity3.25E-02
114GO:0080043: quercetin 3-O-glucosyltransferase activity3.29E-02
115GO:0080044: quercetin 7-O-glucosyltransferase activity3.29E-02
116GO:0004812: aminoacyl-tRNA ligase activity3.44E-02
117GO:0051082: unfolded protein binding3.60E-02
118GO:0050662: coenzyme binding4.03E-02
119GO:0016853: isomerase activity4.03E-02
120GO:0019843: rRNA binding4.50E-02
121GO:0004518: nuclease activity4.66E-02
122GO:0051015: actin filament binding4.88E-02
123GO:0030170: pyridoxal phosphate binding4.98E-02
124GO:0004252: serine-type endopeptidase activity4.98E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
5GO:0009507: chloroplast2.51E-50
6GO:0009534: chloroplast thylakoid2.02E-33
7GO:0009535: chloroplast thylakoid membrane8.26E-29
8GO:0009570: chloroplast stroma7.21E-22
9GO:0009941: chloroplast envelope2.69E-19
10GO:0009543: chloroplast thylakoid lumen1.61E-16
11GO:0030095: chloroplast photosystem II2.74E-11
12GO:0009579: thylakoid7.66E-11
13GO:0031977: thylakoid lumen2.27E-07
14GO:0010287: plastoglobule3.89E-07
15GO:0031304: intrinsic component of mitochondrial inner membrane8.37E-06
16GO:0009533: chloroplast stromal thylakoid1.33E-05
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.84E-05
18GO:0009523: photosystem II6.97E-05
19GO:0009654: photosystem II oxygen evolving complex2.73E-04
20GO:0009344: nitrite reductase complex [NAD(P)H]4.34E-04
21GO:0031361: integral component of thylakoid membrane4.34E-04
22GO:0009782: photosystem I antenna complex4.34E-04
23GO:0031969: chloroplast membrane5.71E-04
24GO:0019898: extrinsic component of membrane7.16E-04
25GO:0048046: apoplast1.20E-03
26GO:0009706: chloroplast inner membrane1.46E-03
27GO:0033281: TAT protein transport complex1.53E-03
28GO:0009508: plastid chromosome1.56E-03
29GO:0005960: glycine cleavage complex2.21E-03
30GO:0032432: actin filament bundle2.21E-03
31GO:0009531: secondary cell wall2.21E-03
32GO:0042651: thylakoid membrane2.70E-03
33GO:0009295: nucleoid7.77E-03
34GO:0010319: stromule7.77E-03
35GO:0009501: amyloplast7.81E-03
36GO:0009538: photosystem I reaction center7.81E-03
37GO:0042644: chloroplast nucleoid1.02E-02
38GO:0008180: COP9 signalosome1.02E-02
39GO:0055028: cortical microtubule1.28E-02
40GO:0005884: actin filament1.42E-02
41GO:0032040: small-subunit processome1.56E-02
42GO:0030076: light-harvesting complex2.02E-02
43GO:0005777: peroxisome4.68E-02
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Gene type



Gene DE type