GO Enrichment Analysis of Co-expressed Genes with
AT5G45490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0034337: RNA folding | 0.00E+00 |
| 4 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 5 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 6.06E-13 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 8.57E-10 |
| 8 | GO:0006412: translation | 1.28E-08 |
| 9 | GO:0042254: ribosome biogenesis | 1.16E-05 |
| 10 | GO:0015995: chlorophyll biosynthetic process | 1.48E-05 |
| 11 | GO:0010207: photosystem II assembly | 1.70E-05 |
| 12 | GO:0042549: photosystem II stabilization | 5.10E-05 |
| 13 | GO:0032544: plastid translation | 1.53E-04 |
| 14 | GO:0043489: RNA stabilization | 1.64E-04 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.64E-04 |
| 16 | GO:0000481: maturation of 5S rRNA | 1.64E-04 |
| 17 | GO:1904964: positive regulation of phytol biosynthetic process | 1.64E-04 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.64E-04 |
| 19 | GO:0018298: protein-chromophore linkage | 2.93E-04 |
| 20 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.73E-04 |
| 21 | GO:0045490: pectin catabolic process | 3.94E-04 |
| 22 | GO:0009409: response to cold | 4.57E-04 |
| 23 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.90E-04 |
| 24 | GO:2001141: regulation of RNA biosynthetic process | 8.73E-04 |
| 25 | GO:0051513: regulation of monopolar cell growth | 8.73E-04 |
| 26 | GO:0071484: cellular response to light intensity | 8.73E-04 |
| 27 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 8.73E-04 |
| 28 | GO:2000122: negative regulation of stomatal complex development | 1.16E-03 |
| 29 | GO:0006546: glycine catabolic process | 1.16E-03 |
| 30 | GO:0010037: response to carbon dioxide | 1.16E-03 |
| 31 | GO:0015976: carbon utilization | 1.16E-03 |
| 32 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.16E-03 |
| 33 | GO:0009765: photosynthesis, light harvesting | 1.16E-03 |
| 34 | GO:0015994: chlorophyll metabolic process | 1.16E-03 |
| 35 | GO:0045454: cell redox homeostasis | 1.39E-03 |
| 36 | GO:0031365: N-terminal protein amino acid modification | 1.47E-03 |
| 37 | GO:0009247: glycolipid biosynthetic process | 1.47E-03 |
| 38 | GO:0034052: positive regulation of plant-type hypersensitive response | 1.47E-03 |
| 39 | GO:0007035: vacuolar acidification | 1.80E-03 |
| 40 | GO:0032973: amino acid export | 1.80E-03 |
| 41 | GO:0010027: thylakoid membrane organization | 2.14E-03 |
| 42 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.17E-03 |
| 43 | GO:0009854: oxidative photosynthetic carbon pathway | 2.17E-03 |
| 44 | GO:0010019: chloroplast-nucleus signaling pathway | 2.17E-03 |
| 45 | GO:1901259: chloroplast rRNA processing | 2.17E-03 |
| 46 | GO:0009645: response to low light intensity stimulus | 2.55E-03 |
| 47 | GO:0009772: photosynthetic electron transport in photosystem II | 2.55E-03 |
| 48 | GO:0043090: amino acid import | 2.55E-03 |
| 49 | GO:0050829: defense response to Gram-negative bacterium | 2.55E-03 |
| 50 | GO:0043068: positive regulation of programmed cell death | 2.95E-03 |
| 51 | GO:0019375: galactolipid biosynthetic process | 2.95E-03 |
| 52 | GO:0032508: DNA duplex unwinding | 2.95E-03 |
| 53 | GO:0009631: cold acclimation | 3.21E-03 |
| 54 | GO:0017004: cytochrome complex assembly | 3.37E-03 |
| 55 | GO:0071482: cellular response to light stimulus | 3.37E-03 |
| 56 | GO:0009637: response to blue light | 3.52E-03 |
| 57 | GO:0034599: cellular response to oxidative stress | 3.68E-03 |
| 58 | GO:0010206: photosystem II repair | 3.81E-03 |
| 59 | GO:0080144: amino acid homeostasis | 3.81E-03 |
| 60 | GO:0006783: heme biosynthetic process | 3.81E-03 |
| 61 | GO:0000373: Group II intron splicing | 3.81E-03 |
| 62 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.81E-03 |
| 63 | GO:0009735: response to cytokinin | 3.98E-03 |
| 64 | GO:0010114: response to red light | 4.53E-03 |
| 65 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 4.75E-03 |
| 66 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.75E-03 |
| 67 | GO:0019684: photosynthesis, light reaction | 5.25E-03 |
| 68 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.25E-03 |
| 69 | GO:0043085: positive regulation of catalytic activity | 5.25E-03 |
| 70 | GO:0006352: DNA-templated transcription, initiation | 5.25E-03 |
| 71 | GO:0009698: phenylpropanoid metabolic process | 5.25E-03 |
| 72 | GO:0010628: positive regulation of gene expression | 6.30E-03 |
| 73 | GO:0006006: glucose metabolic process | 6.30E-03 |
| 74 | GO:0009725: response to hormone | 6.30E-03 |
| 75 | GO:0010143: cutin biosynthetic process | 6.85E-03 |
| 76 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.00E-03 |
| 77 | GO:0019762: glucosinolate catabolic process | 8.00E-03 |
| 78 | GO:0042545: cell wall modification | 8.42E-03 |
| 79 | GO:0000027: ribosomal large subunit assembly | 8.59E-03 |
| 80 | GO:0015992: proton transport | 9.84E-03 |
| 81 | GO:0048511: rhythmic process | 9.84E-03 |
| 82 | GO:0061077: chaperone-mediated protein folding | 9.84E-03 |
| 83 | GO:0009814: defense response, incompatible interaction | 1.05E-02 |
| 84 | GO:0006284: base-excision repair | 1.18E-02 |
| 85 | GO:0009561: megagametogenesis | 1.18E-02 |
| 86 | GO:0042744: hydrogen peroxide catabolic process | 1.24E-02 |
| 87 | GO:0000413: protein peptidyl-prolyl isomerization | 1.32E-02 |
| 88 | GO:0006662: glycerol ether metabolic process | 1.39E-02 |
| 89 | GO:0015986: ATP synthesis coupled proton transport | 1.47E-02 |
| 90 | GO:0042752: regulation of circadian rhythm | 1.47E-02 |
| 91 | GO:0000302: response to reactive oxygen species | 1.62E-02 |
| 92 | GO:0055114: oxidation-reduction process | 2.02E-02 |
| 93 | GO:0042128: nitrate assimilation | 2.27E-02 |
| 94 | GO:0009658: chloroplast organization | 2.33E-02 |
| 95 | GO:0006810: transport | 2.36E-02 |
| 96 | GO:0000160: phosphorelay signal transduction system | 2.63E-02 |
| 97 | GO:0009407: toxin catabolic process | 2.72E-02 |
| 98 | GO:0010218: response to far red light | 2.72E-02 |
| 99 | GO:0010119: regulation of stomatal movement | 2.82E-02 |
| 100 | GO:0045087: innate immune response | 3.01E-02 |
| 101 | GO:0009853: photorespiration | 3.01E-02 |
| 102 | GO:0030001: metal ion transport | 3.30E-02 |
| 103 | GO:0009644: response to high light intensity | 3.81E-02 |
| 104 | GO:0009636: response to toxic substance | 3.91E-02 |
| 105 | GO:0006397: mRNA processing | 4.44E-02 |
| 106 | GO:0009736: cytokinin-activated signaling pathway | 4.45E-02 |
| 107 | GO:0006417: regulation of translation | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 3 | GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity | 0.00E+00 |
| 4 | GO:0019843: rRNA binding | 3.25E-14 |
| 5 | GO:0003735: structural constituent of ribosome | 1.70E-10 |
| 6 | GO:0005528: FK506 binding | 7.64E-09 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.21E-07 |
| 8 | GO:0016851: magnesium chelatase activity | 1.14E-05 |
| 9 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.64E-05 |
| 10 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.64E-04 |
| 11 | GO:0016168: chlorophyll binding | 2.20E-04 |
| 12 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.73E-04 |
| 13 | GO:0047746: chlorophyllase activity | 3.73E-04 |
| 14 | GO:0042389: omega-3 fatty acid desaturase activity | 3.73E-04 |
| 15 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 3.73E-04 |
| 16 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 3.73E-04 |
| 17 | GO:0031409: pigment binding | 5.67E-04 |
| 18 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.11E-04 |
| 19 | GO:0050734: hydroxycinnamoyltransferase activity | 6.11E-04 |
| 20 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.11E-04 |
| 21 | GO:0035250: UDP-galactosyltransferase activity | 8.73E-04 |
| 22 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 8.73E-04 |
| 23 | GO:0030570: pectate lyase activity | 8.97E-04 |
| 24 | GO:0004659: prenyltransferase activity | 1.16E-03 |
| 25 | GO:0001053: plastid sigma factor activity | 1.16E-03 |
| 26 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.16E-03 |
| 27 | GO:0016987: sigma factor activity | 1.16E-03 |
| 28 | GO:0043495: protein anchor | 1.16E-03 |
| 29 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.47E-03 |
| 30 | GO:0016688: L-ascorbate peroxidase activity | 1.80E-03 |
| 31 | GO:0004130: cytochrome-c peroxidase activity | 1.80E-03 |
| 32 | GO:0051920: peroxiredoxin activity | 2.17E-03 |
| 33 | GO:0019899: enzyme binding | 2.55E-03 |
| 34 | GO:0008235: metalloexopeptidase activity | 2.55E-03 |
| 35 | GO:0016209: antioxidant activity | 2.95E-03 |
| 36 | GO:0004033: aldo-keto reductase (NADP) activity | 2.95E-03 |
| 37 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.37E-03 |
| 38 | GO:0008047: enzyme activator activity | 4.75E-03 |
| 39 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 5.25E-03 |
| 40 | GO:0004177: aminopeptidase activity | 5.25E-03 |
| 41 | GO:0008794: arsenate reductase (glutaredoxin) activity | 5.25E-03 |
| 42 | GO:0004089: carbonate dehydratase activity | 6.30E-03 |
| 43 | GO:0031072: heat shock protein binding | 6.30E-03 |
| 44 | GO:0045330: aspartyl esterase activity | 6.75E-03 |
| 45 | GO:0008266: poly(U) RNA binding | 6.85E-03 |
| 46 | GO:0004650: polygalacturonase activity | 7.93E-03 |
| 47 | GO:0030599: pectinesterase activity | 8.18E-03 |
| 48 | GO:0015035: protein disulfide oxidoreductase activity | 8.94E-03 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 1.11E-02 |
| 50 | GO:0016829: lyase activity | 1.18E-02 |
| 51 | GO:0005509: calcium ion binding | 1.18E-02 |
| 52 | GO:0047134: protein-disulfide reductase activity | 1.25E-02 |
| 53 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.39E-02 |
| 54 | GO:0004791: thioredoxin-disulfide reductase activity | 1.47E-02 |
| 55 | GO:0046872: metal ion binding | 1.60E-02 |
| 56 | GO:0048038: quinone binding | 1.62E-02 |
| 57 | GO:0000156: phosphorelay response regulator activity | 1.77E-02 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.77E-02 |
| 59 | GO:0003723: RNA binding | 2.02E-02 |
| 60 | GO:0004601: peroxidase activity | 2.33E-02 |
| 61 | GO:0102483: scopolin beta-glucosidase activity | 2.36E-02 |
| 62 | GO:0004222: metalloendopeptidase activity | 2.72E-02 |
| 63 | GO:0008422: beta-glucosidase activity | 3.20E-02 |
| 64 | GO:0050661: NADP binding | 3.30E-02 |
| 65 | GO:0004364: glutathione transferase activity | 3.50E-02 |
| 66 | GO:0004185: serine-type carboxypeptidase activity | 3.60E-02 |
| 67 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.45E-02 |
| 68 | GO:0009055: electron carrier activity | 4.56E-02 |
| 69 | GO:0015171: amino acid transmembrane transporter activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 9.71E-48 |
| 4 | GO:0009941: chloroplast envelope | 7.80E-31 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.00E-30 |
| 6 | GO:0009570: chloroplast stroma | 3.10E-27 |
| 7 | GO:0009534: chloroplast thylakoid | 3.32E-24 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.80E-21 |
| 9 | GO:0009579: thylakoid | 3.32E-14 |
| 10 | GO:0031977: thylakoid lumen | 5.31E-13 |
| 11 | GO:0005840: ribosome | 3.08E-11 |
| 12 | GO:0009706: chloroplast inner membrane | 2.14E-08 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.20E-08 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 7.54E-07 |
| 15 | GO:0019898: extrinsic component of membrane | 4.05E-06 |
| 16 | GO:0010007: magnesium chelatase complex | 4.89E-06 |
| 17 | GO:0030095: chloroplast photosystem II | 1.70E-05 |
| 18 | GO:0009523: photosystem II | 1.09E-04 |
| 19 | GO:0009782: photosystem I antenna complex | 1.64E-04 |
| 20 | GO:0010287: plastoglobule | 2.14E-04 |
| 21 | GO:0032040: small-subunit processome | 3.54E-04 |
| 22 | GO:0042170: plastid membrane | 3.73E-04 |
| 23 | GO:0000312: plastid small ribosomal subunit | 4.55E-04 |
| 24 | GO:0030076: light-harvesting complex | 5.09E-04 |
| 25 | GO:0042651: thylakoid membrane | 6.90E-04 |
| 26 | GO:0015935: small ribosomal subunit | 7.57E-04 |
| 27 | GO:0005960: glycine cleavage complex | 8.73E-04 |
| 28 | GO:0042646: plastid nucleoid | 8.73E-04 |
| 29 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 1.47E-03 |
| 30 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.80E-03 |
| 31 | GO:0009295: nucleoid | 1.91E-03 |
| 32 | GO:0030529: intracellular ribonucleoprotein complex | 2.14E-03 |
| 33 | GO:0016363: nuclear matrix | 2.17E-03 |
| 34 | GO:0009533: chloroplast stromal thylakoid | 2.55E-03 |
| 35 | GO:0015934: large ribosomal subunit | 3.21E-03 |
| 36 | GO:0009536: plastid | 5.12E-03 |
| 37 | GO:0000311: plastid large ribosomal subunit | 5.77E-03 |
| 38 | GO:0009522: photosystem I | 1.47E-02 |
| 39 | GO:0071944: cell periphery | 1.77E-02 |
| 40 | GO:0010319: stromule | 1.94E-02 |
| 41 | GO:0022627: cytosolic small ribosomal subunit | 2.00E-02 |
| 42 | GO:0016020: membrane | 2.42E-02 |
| 43 | GO:0022625: cytosolic large ribosomal subunit | 3.04E-02 |