co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G44680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:1901698: response to nitrogen compound	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0061635: regulation of protein complex stability	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0005996: monosaccharide metabolic process	0.00E+00
9	GO:0015979: photosynthesis	7.88E-09
10	GO:0009735: response to cytokinin	3.09E-06
11	GO:0042254: ribosome biogenesis	3.54E-06
12	GO:0006412: translation	6.10E-06
13	GO:0015995: chlorophyll biosynthetic process	9.20E-06
14	GO:0009773: photosynthetic electron transport in photosystem I	5.58E-05
15	GO:0015976: carbon utilization	8.19E-05
16	GO:0045727: positive regulation of translation	8.19E-05
17	GO:0006546: glycine catabolic process	8.19E-05
18	GO:0010207: photosystem II assembly	1.02E-04
19	GO:0006833: water transport	1.43E-04
20	GO:0042549: photosystem II stabilization	1.84E-04
21	GO:0010019: chloroplast-nucleus signaling pathway	2.49E-04
22	GO:0010114: response to red light	3.63E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	3.65E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	3.65E-04
25	GO:0043489: RNA stabilization	3.65E-04
26	GO:0046520: sphingoid biosynthetic process	3.65E-04
27	GO:0042371: vitamin K biosynthetic process	3.65E-04
28	GO:0034220: ion transmembrane transport	3.89E-04
29	GO:0046620: regulation of organ growth	4.05E-04
30	GO:0007623: circadian rhythm	4.64E-04
31	GO:0009657: plastid organization	4.96E-04
32	GO:0032544: plastid translation	4.96E-04
33	GO:0010206: photosystem II repair	5.94E-04
34	GO:0009409: response to cold	6.76E-04
35	GO:0006779: porphyrin-containing compound biosynthetic process	7.02E-04
36	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.94E-04
37	GO:0006521: regulation of cellular amino acid metabolic process	7.94E-04
38	GO:0034755: iron ion transmembrane transport	7.94E-04
39	GO:0006949: syncytium formation	8.18E-04
40	GO:0006782: protoporphyrinogen IX biosynthetic process	8.18E-04
41	GO:0010027: thylakoid membrane organization	8.99E-04
42	GO:0009658: chloroplast organization	1.01E-03
43	GO:0015706: nitrate transport	1.07E-03
44	GO:0009725: response to hormone	1.22E-03
45	GO:0018298: protein-chromophore linkage	1.25E-03
46	GO:0006013: mannose metabolic process	1.29E-03
47	GO:0015840: urea transport	1.29E-03
48	GO:0071705: nitrogen compound transport	1.29E-03
49	GO:0006696: ergosterol biosynthetic process	1.29E-03
50	GO:0010167: response to nitrate	1.53E-03
51	GO:0006636: unsaturated fatty acid biosynthetic process	1.71E-03
52	GO:1902476: chloride transmembrane transport	1.85E-03
53	GO:0051513: regulation of monopolar cell growth	1.85E-03
54	GO:0071484: cellular response to light intensity	1.85E-03
55	GO:0009800: cinnamic acid biosynthetic process	1.85E-03
56	GO:0080170: hydrogen peroxide transmembrane transport	1.85E-03
57	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.85E-03
58	GO:2001141: regulation of RNA biosynthetic process	1.85E-03
59	GO:0009768: photosynthesis, light harvesting in photosystem I	2.09E-03
60	GO:0045490: pectin catabolic process	2.27E-03
61	GO:0006810: transport	2.45E-03
62	GO:0006542: glutamine biosynthetic process	2.49E-03
63	GO:0019676: ammonia assimilation cycle	2.49E-03
64	GO:0019464: glycine decarboxylation via glycine cleavage system	2.49E-03
65	GO:0071249: cellular response to nitrate	2.49E-03
66	GO:0015994: chlorophyll metabolic process	2.49E-03
67	GO:2000122: negative regulation of stomatal complex development	2.49E-03
68	GO:0030104: water homeostasis	2.49E-03
69	GO:0010037: response to carbon dioxide	2.49E-03
70	GO:0009644: response to high light intensity	2.58E-03
71	GO:0009664: plant-type cell wall organization	3.12E-03
72	GO:0006461: protein complex assembly	3.18E-03
73	GO:0009247: glycolipid biosynthetic process	3.18E-03
74	GO:0034052: positive regulation of plant-type hypersensitive response	3.18E-03
75	GO:0032543: mitochondrial translation	3.18E-03
76	GO:0045038: protein import into chloroplast thylakoid membrane	3.18E-03
77	GO:0042631: cellular response to water deprivation	3.49E-03
78	GO:0042335: cuticle development	3.49E-03
79	GO:0009733: response to auxin	3.92E-03
80	GO:1902456: regulation of stomatal opening	3.93E-03
81	GO:0006559: L-phenylalanine catabolic process	3.93E-03
82	GO:0032973: amino acid export	3.93E-03
83	GO:0009826: unidimensional cell growth	4.18E-03
84	GO:0000302: response to reactive oxygen species	4.65E-03
85	GO:0009854: oxidative photosynthetic carbon pathway	4.74E-03
86	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.74E-03
87	GO:0006694: steroid biosynthetic process	4.74E-03
88	GO:0009740: gibberellic acid mediated signaling pathway	4.96E-03
89	GO:0042545: cell wall modification	5.16E-03
90	GO:0009610: response to symbiotic fungus	5.60E-03
91	GO:0043090: amino acid import	5.60E-03
92	GO:0030497: fatty acid elongation	5.60E-03
93	GO:0006821: chloride transport	5.60E-03
94	GO:0009645: response to low light intensity stimulus	5.60E-03
95	GO:0050829: defense response to Gram-negative bacterium	5.60E-03
96	GO:0010444: guard mother cell differentiation	5.60E-03
97	GO:0009828: plant-type cell wall loosening	5.63E-03
98	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.47E-03
99	GO:0009231: riboflavin biosynthetic process	6.51E-03
100	GO:0006402: mRNA catabolic process	6.51E-03
101	GO:0030091: protein repair	6.51E-03
102	GO:0009850: auxin metabolic process	6.51E-03
103	GO:0043068: positive regulation of programmed cell death	6.51E-03
104	GO:0006605: protein targeting	6.51E-03
105	GO:0019375: galactolipid biosynthetic process	6.51E-03
106	GO:0009808: lignin metabolic process	7.47E-03
107	GO:0009699: phenylpropanoid biosynthetic process	7.47E-03
108	GO:0009932: cell tip growth	7.47E-03
109	GO:0071482: cellular response to light stimulus	7.47E-03
110	GO:0009416: response to light stimulus	7.96E-03
111	GO:0009051: pentose-phosphate shunt, oxidative branch	8.47E-03
112	GO:0080144: amino acid homeostasis	8.47E-03
113	GO:0006783: heme biosynthetic process	8.47E-03
114	GO:0000373: Group II intron splicing	8.47E-03
115	GO:0010205: photoinhibition	9.53E-03
116	GO:0040008: regulation of growth	1.01E-02
117	GO:0010119: regulation of stomatal movement	1.02E-02
118	GO:0009631: cold acclimation	1.02E-02
119	GO:0009299: mRNA transcription	1.06E-02
120	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.06E-02
121	GO:0009637: response to blue light	1.12E-02
122	GO:0034599: cellular response to oxidative stress	1.17E-02
123	GO:0010015: root morphogenesis	1.18E-02
124	GO:0000038: very long-chain fatty acid metabolic process	1.18E-02
125	GO:0009698: phenylpropanoid metabolic process	1.18E-02
126	GO:0019684: photosynthesis, light reaction	1.18E-02
127	GO:0009089: lysine biosynthetic process via diaminopimelate	1.18E-02
128	GO:0043085: positive regulation of catalytic activity	1.18E-02
129	GO:0006879: cellular iron ion homeostasis	1.18E-02
130	GO:0006352: DNA-templated transcription, initiation	1.18E-02
131	GO:0000272: polysaccharide catabolic process	1.18E-02
132	GO:0009750: response to fructose	1.18E-02
133	GO:0018119: peptidyl-cysteine S-nitrosylation	1.18E-02
134	GO:0009739: response to gibberellin	1.24E-02
135	GO:0008152: metabolic process	1.29E-02
136	GO:0050826: response to freezing	1.42E-02
137	GO:0006006: glucose metabolic process	1.42E-02
138	GO:2000028: regulation of photoperiodism, flowering	1.42E-02
139	GO:0009926: auxin polar transport	1.44E-02
140	GO:0009744: response to sucrose	1.44E-02
141	GO:0010143: cutin biosynthetic process	1.55E-02
142	GO:0010030: positive regulation of seed germination	1.68E-02
143	GO:0019762: glucosinolate catabolic process	1.81E-02
144	GO:0010025: wax biosynthetic process	1.81E-02
145	GO:0009734: auxin-activated signaling pathway	1.86E-02
146	GO:0005992: trehalose biosynthetic process	1.95E-02
147	GO:0006364: rRNA processing	1.95E-02
148	GO:0006417: regulation of translation	2.16E-02
149	GO:0048511: rhythmic process	2.24E-02
150	GO:0061077: chaperone-mediated protein folding	2.24E-02
151	GO:0031408: oxylipin biosynthetic process	2.24E-02
152	GO:0019748: secondary metabolic process	2.38E-02
153	GO:0009814: defense response, incompatible interaction	2.38E-02
154	GO:0080167: response to karrikin	2.46E-02
155	GO:0009626: plant-type hypersensitive response	2.46E-02
156	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.54E-02
157	GO:0009306: protein secretion	2.69E-02
158	GO:0009611: response to wounding	2.71E-02
159	GO:0016117: carotenoid biosynthetic process	2.85E-02
160	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.85E-02
161	GO:0006396: RNA processing	2.86E-02
162	GO:0009742: brassinosteroid mediated signaling pathway	2.94E-02
163	GO:0010087: phloem or xylem histogenesis	3.01E-02
164	GO:0000413: protein peptidyl-prolyl isomerization	3.01E-02
165	GO:0010305: leaf vascular tissue pattern formation	3.18E-02
166	GO:0042752: regulation of circadian rhythm	3.35E-02
167	GO:0009749: response to glucose	3.52E-02
168	GO:0016132: brassinosteroid biosynthetic process	3.69E-02
169	GO:0071554: cell wall organization or biogenesis	3.69E-02
170	GO:0002229: defense response to oomycetes	3.69E-02
171	GO:0055085: transmembrane transport	3.71E-02
172	GO:0009630: gravitropism	3.87E-02
173	GO:0009651: response to salt stress	3.91E-02
174	GO:0042744: hydrogen peroxide catabolic process	3.95E-02
175	GO:0009790: embryo development	4.05E-02
176	GO:0006397: mRNA processing	4.20E-02
177	GO:0006633: fatty acid biosynthetic process	4.35E-02
178	GO:0009451: RNA modification	4.88E-02
179	GO:0055114: oxidation-reduction process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0050614: delta24-sterol reductase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
8	GO:0008887: glycerate kinase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0019843: rRNA binding	7.34E-13
13	GO:0003735: structural constituent of ribosome	6.22E-08
14	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.00E-06
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.57E-05
16	GO:0015250: water channel activity	9.87E-05
17	GO:0005528: FK506 binding	1.66E-04
18	GO:0004130: cytochrome-c peroxidase activity	1.84E-04
19	GO:0000170: sphingosine hydroxylase activity	3.65E-04
20	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.65E-04
21	GO:0046906: tetrapyrrole binding	3.65E-04
22	GO:0052638: indole-3-butyrate beta-glucosyltransferase activity	3.65E-04
23	GO:0004655: porphobilinogen synthase activity	3.65E-04
24	GO:0009671: nitrate:proton symporter activity	3.65E-04
25	GO:0051996: squalene synthase activity	3.65E-04
26	GO:0015200: methylammonium transmembrane transporter activity	3.65E-04
27	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.96E-04
28	GO:0047746: chlorophyllase activity	7.94E-04
29	GO:0042389: omega-3 fatty acid desaturase activity	7.94E-04
30	GO:0010297: heteropolysaccharide binding	7.94E-04
31	GO:0043425: bHLH transcription factor binding	7.94E-04
32	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	7.94E-04
33	GO:0004047: aminomethyltransferase activity	7.94E-04
34	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	7.94E-04
35	GO:0042284: sphingolipid delta-4 desaturase activity	7.94E-04
36	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.94E-04
37	GO:0008967: phosphoglycolate phosphatase activity	7.94E-04
38	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.94E-04
39	GO:0016597: amino acid binding	8.38E-04
40	GO:0016168: chlorophyll binding	9.63E-04
41	GO:0004089: carbonate dehydratase activity	1.22E-03
42	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.29E-03
43	GO:0050734: hydroxycinnamoyltransferase activity	1.29E-03
44	GO:0045548: phenylalanine ammonia-lyase activity	1.29E-03
45	GO:0090729: toxin activity	1.29E-03
46	GO:0003935: GTP cyclohydrolase II activity	1.29E-03
47	GO:0008266: poly(U) RNA binding	1.37E-03
48	GO:0031409: pigment binding	1.71E-03
49	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.85E-03
50	GO:0035250: UDP-galactosyltransferase activity	1.85E-03
51	GO:0015204: urea transmembrane transporter activity	2.49E-03
52	GO:0004659: prenyltransferase activity	2.49E-03
53	GO:0001053: plastid sigma factor activity	2.49E-03
54	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.49E-03
55	GO:0016987: sigma factor activity	2.49E-03
56	GO:0005253: anion channel activity	2.49E-03
57	GO:0051537: 2 iron, 2 sulfur cluster binding	2.58E-03
58	GO:0004356: glutamate-ammonia ligase activity	3.18E-03
59	GO:0009922: fatty acid elongase activity	3.18E-03
60	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.18E-03
61	GO:0045330: aspartyl esterase activity	3.89E-03
62	GO:0008519: ammonium transmembrane transporter activity	3.93E-03
63	GO:0005247: voltage-gated chloride channel activity	3.93E-03
64	GO:0016688: L-ascorbate peroxidase activity	3.93E-03
65	GO:0050662: coenzyme binding	4.05E-03
66	GO:0004559: alpha-mannosidase activity	4.74E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.74E-03
68	GO:0030599: pectinesterase activity	4.96E-03
69	GO:0019899: enzyme binding	5.60E-03
70	GO:0015112: nitrate transmembrane transporter activity	9.53E-03
71	GO:0005381: iron ion transmembrane transporter activity	9.53E-03
72	GO:0004805: trehalose-phosphatase activity	1.06E-02
73	GO:0031072: heat shock protein binding	1.42E-02
74	GO:0004185: serine-type carboxypeptidase activity	1.44E-02
75	GO:0008146: sulfotransferase activity	1.68E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.81E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.81E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.81E-02
79	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.38E-02
80	GO:0022891: substrate-specific transmembrane transporter activity	2.54E-02
81	GO:0004650: polygalacturonase activity	2.54E-02
82	GO:0030570: pectate lyase activity	2.54E-02
83	GO:0003727: single-stranded RNA binding	2.69E-02
84	GO:0003756: protein disulfide isomerase activity	2.69E-02
85	GO:0003824: catalytic activity	3.12E-02
86	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.69E-02
87	GO:0000156: phosphorelay response regulator activity	4.05E-02
88	GO:0046983: protein dimerization activity	4.30E-02
89	GO:0008483: transaminase activity	4.42E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.42E-02
91	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.46E-02
92	GO:0046910: pectinesterase inhibitor activity	4.46E-02
93	GO:0016413: O-acetyltransferase activity	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0009575: chromoplast stroma	0.00E+00
2	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
3	GO:0044391: ribosomal subunit	0.00E+00
4	GO:0009507: chloroplast	9.09E-41
5	GO:0009941: chloroplast envelope	1.58E-27
6	GO:0009535: chloroplast thylakoid membrane	3.35E-27
7	GO:0009570: chloroplast stroma	6.76E-20
8	GO:0009534: chloroplast thylakoid	9.69E-19
9	GO:0009543: chloroplast thylakoid lumen	2.55E-14
10	GO:0009579: thylakoid	8.51E-13
11	GO:0005840: ribosome	5.61E-08
12	GO:0030095: chloroplast photosystem II	6.69E-08
13	GO:0031977: thylakoid lumen	9.05E-08
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.54E-05
15	GO:0009523: photosystem II	4.28E-05
16	GO:0009505: plant-type cell wall	1.60E-04
17	GO:0009706: chloroplast inner membrane	1.62E-04
18	GO:0009654: photosystem II oxygen evolving complex	1.92E-04
19	GO:0015935: small ribosomal subunit	2.20E-04
20	GO:0010287: plastoglobule	2.28E-04
21	GO:0042807: central vacuole	3.23E-04
22	GO:0031969: chloroplast membrane	3.33E-04
23	GO:0009782: photosystem I antenna complex	3.65E-04
24	GO:0043674: columella	3.65E-04
25	GO:0019898: extrinsic component of membrane	5.18E-04
26	GO:0005618: cell wall	6.90E-04
27	GO:0080085: signal recognition particle, chloroplast targeting	7.94E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	7.94E-04
29	GO:0042170: plastid membrane	7.94E-04
30	GO:0030529: intracellular ribonucleoprotein complex	8.99E-04
31	GO:0000311: plastid large ribosomal subunit	1.07E-03
32	GO:0016020: membrane	1.25E-03
33	GO:0000312: plastid small ribosomal subunit	1.37E-03
34	GO:0030076: light-harvesting complex	1.53E-03
35	GO:0009531: secondary cell wall	1.85E-03
36	GO:0042646: plastid nucleoid	1.85E-03
37	GO:0005960: glycine cleavage complex	1.85E-03
38	GO:0048046: apoplast	3.44E-03
39	GO:0034707: chloride channel complex	3.93E-03
40	GO:0009522: photosystem I	4.05E-03
41	GO:0016363: nuclear matrix	4.74E-03
42	GO:0009533: chloroplast stromal thylakoid	5.60E-03
43	GO:0010319: stromule	5.99E-03
44	GO:0009295: nucleoid	5.99E-03
45	GO:0000326: protein storage vacuole	7.47E-03
46	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	7.47E-03
47	GO:0005774: vacuolar membrane	7.50E-03
48	GO:0008180: COP9 signalosome	8.47E-03
49	GO:0009705: plant-type vacuole membrane	1.08E-02
50	GO:0005887: integral component of plasma membrane	1.76E-02
51	GO:0042651: thylakoid membrane	2.09E-02
52	GO:0071944: cell periphery	4.05E-02
53	GO:0005773: vacuole	4.60E-02
54	GO:0031225: anchored component of membrane	4.98E-02