GO Enrichment Analysis of Co-expressed Genes with
AT5G44650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 2 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 3 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 4 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 4.59E-14 |
| 8 | GO:0015979: photosynthesis | 1.76E-11 |
| 9 | GO:0009735: response to cytokinin | 1.54E-08 |
| 10 | GO:0032544: plastid translation | 2.07E-08 |
| 11 | GO:0006412: translation | 1.10E-07 |
| 12 | GO:0009658: chloroplast organization | 7.68E-07 |
| 13 | GO:0090391: granum assembly | 5.01E-06 |
| 14 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.87E-06 |
| 15 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.16E-05 |
| 16 | GO:0042742: defense response to bacterium | 4.28E-05 |
| 17 | GO:0009772: photosynthetic electron transport in photosystem II | 9.72E-05 |
| 18 | GO:0042255: ribosome assembly | 1.25E-04 |
| 19 | GO:0032502: developmental process | 1.36E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.67E-04 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 1.67E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.67E-04 |
| 23 | GO:0006783: heme biosynthetic process | 1.91E-04 |
| 24 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.29E-04 |
| 25 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.78E-04 |
| 26 | GO:0006568: tryptophan metabolic process | 3.78E-04 |
| 27 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.78E-04 |
| 28 | GO:0015714: phosphoenolpyruvate transport | 6.19E-04 |
| 29 | GO:0071492: cellular response to UV-A | 6.19E-04 |
| 30 | GO:0006760: folic acid-containing compound metabolic process | 6.19E-04 |
| 31 | GO:0042254: ribosome biogenesis | 8.13E-04 |
| 32 | GO:0006241: CTP biosynthetic process | 8.83E-04 |
| 33 | GO:0006165: nucleoside diphosphate phosphorylation | 8.83E-04 |
| 34 | GO:0006228: UTP biosynthetic process | 8.83E-04 |
| 35 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.83E-04 |
| 36 | GO:0006986: response to unfolded protein | 8.83E-04 |
| 37 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.83E-04 |
| 38 | GO:0071486: cellular response to high light intensity | 1.17E-03 |
| 39 | GO:0006183: GTP biosynthetic process | 1.17E-03 |
| 40 | GO:0015713: phosphoglycerate transport | 1.17E-03 |
| 41 | GO:0044206: UMP salvage | 1.17E-03 |
| 42 | GO:0046656: folic acid biosynthetic process | 1.17E-03 |
| 43 | GO:0006021: inositol biosynthetic process | 1.17E-03 |
| 44 | GO:0043097: pyrimidine nucleoside salvage | 1.48E-03 |
| 45 | GO:0032543: mitochondrial translation | 1.48E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.48E-03 |
| 47 | GO:0031365: N-terminal protein amino acid modification | 1.48E-03 |
| 48 | GO:0006457: protein folding | 1.68E-03 |
| 49 | GO:0009409: response to cold | 1.75E-03 |
| 50 | GO:0006206: pyrimidine nucleobase metabolic process | 1.83E-03 |
| 51 | GO:0046855: inositol phosphate dephosphorylation | 1.83E-03 |
| 52 | GO:0006796: phosphate-containing compound metabolic process | 1.83E-03 |
| 53 | GO:0010190: cytochrome b6f complex assembly | 1.83E-03 |
| 54 | GO:0010027: thylakoid membrane organization | 2.18E-03 |
| 55 | GO:0009955: adaxial/abaxial pattern specification | 2.19E-03 |
| 56 | GO:0042026: protein refolding | 2.19E-03 |
| 57 | GO:1901259: chloroplast rRNA processing | 2.19E-03 |
| 58 | GO:0042372: phylloquinone biosynthetic process | 2.19E-03 |
| 59 | GO:0017148: negative regulation of translation | 2.19E-03 |
| 60 | GO:0046654: tetrahydrofolate biosynthetic process | 2.19E-03 |
| 61 | GO:0009854: oxidative photosynthetic carbon pathway | 2.19E-03 |
| 62 | GO:0010555: response to mannitol | 2.19E-03 |
| 63 | GO:0009627: systemic acquired resistance | 2.43E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 2.58E-03 |
| 65 | GO:0006826: iron ion transport | 2.58E-03 |
| 66 | GO:0009642: response to light intensity | 2.99E-03 |
| 67 | GO:0006353: DNA-templated transcription, termination | 2.99E-03 |
| 68 | GO:0009657: plastid organization | 3.41E-03 |
| 69 | GO:0009245: lipid A biosynthetic process | 3.86E-03 |
| 70 | GO:0019538: protein metabolic process | 4.81E-03 |
| 71 | GO:0009773: photosynthetic electron transport in photosystem I | 5.32E-03 |
| 72 | GO:0043085: positive regulation of catalytic activity | 5.32E-03 |
| 73 | GO:0080167: response to karrikin | 5.80E-03 |
| 74 | GO:0006790: sulfur compound metabolic process | 5.84E-03 |
| 75 | GO:0019253: reductive pentose-phosphate cycle | 6.93E-03 |
| 76 | GO:0045454: cell redox homeostasis | 7.29E-03 |
| 77 | GO:0019853: L-ascorbic acid biosynthetic process | 7.50E-03 |
| 78 | GO:0010039: response to iron ion | 7.50E-03 |
| 79 | GO:0046854: phosphatidylinositol phosphorylation | 7.50E-03 |
| 80 | GO:0019344: cysteine biosynthetic process | 8.70E-03 |
| 81 | GO:0009116: nucleoside metabolic process | 8.70E-03 |
| 82 | GO:0006487: protein N-linked glycosylation | 8.70E-03 |
| 83 | GO:0061077: chaperone-mediated protein folding | 9.97E-03 |
| 84 | GO:0007005: mitochondrion organization | 1.06E-02 |
| 85 | GO:0009411: response to UV | 1.13E-02 |
| 86 | GO:0009790: embryo development | 1.30E-02 |
| 87 | GO:0042335: cuticle development | 1.34E-02 |
| 88 | GO:0000413: protein peptidyl-prolyl isomerization | 1.34E-02 |
| 89 | GO:0009741: response to brassinosteroid | 1.41E-02 |
| 90 | GO:0006662: glycerol ether metabolic process | 1.41E-02 |
| 91 | GO:0006413: translational initiation | 1.43E-02 |
| 92 | GO:0015986: ATP synthesis coupled proton transport | 1.49E-02 |
| 93 | GO:0010583: response to cyclopentenone | 1.72E-02 |
| 94 | GO:1901657: glycosyl compound metabolic process | 1.80E-02 |
| 95 | GO:0008380: RNA splicing | 1.83E-02 |
| 96 | GO:0009416: response to light stimulus | 1.97E-02 |
| 97 | GO:0018298: protein-chromophore linkage | 2.57E-02 |
| 98 | GO:0008219: cell death | 2.57E-02 |
| 99 | GO:0009853: photorespiration | 3.05E-02 |
| 100 | GO:0034599: cellular response to oxidative stress | 3.14E-02 |
| 101 | GO:0006839: mitochondrial transport | 3.34E-02 |
| 102 | GO:0030001: metal ion transport | 3.34E-02 |
| 103 | GO:0042542: response to hydrogen peroxide | 3.55E-02 |
| 104 | GO:0009644: response to high light intensity | 3.86E-02 |
| 105 | GO:0006812: cation transport | 4.29E-02 |
| 106 | GO:0009585: red, far-red light phototransduction | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 2 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 3 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 4 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 5 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 6 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 7 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 8 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 1.82E-09 |
| 10 | GO:0003735: structural constituent of ribosome | 2.15E-09 |
| 11 | GO:0016851: magnesium chelatase activity | 1.16E-05 |
| 12 | GO:0051082: unfolded protein binding | 1.64E-04 |
| 13 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.67E-04 |
| 14 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.67E-04 |
| 15 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.67E-04 |
| 16 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.67E-04 |
| 17 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.67E-04 |
| 18 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.67E-04 |
| 19 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.67E-04 |
| 20 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.67E-04 |
| 21 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 3.78E-04 |
| 22 | GO:0052832: inositol monophosphate 3-phosphatase activity | 3.78E-04 |
| 23 | GO:0000774: adenyl-nucleotide exchange factor activity | 3.78E-04 |
| 24 | GO:0008934: inositol monophosphate 1-phosphatase activity | 3.78E-04 |
| 25 | GO:0052833: inositol monophosphate 4-phosphatase activity | 3.78E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 3.78E-04 |
| 27 | GO:0004150: dihydroneopterin aldolase activity | 3.78E-04 |
| 28 | GO:0004751: ribose-5-phosphate isomerase activity | 6.19E-04 |
| 29 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.88E-04 |
| 30 | GO:0051087: chaperone binding | 7.02E-04 |
| 31 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 8.83E-04 |
| 32 | GO:0004550: nucleoside diphosphate kinase activity | 8.83E-04 |
| 33 | GO:0043023: ribosomal large subunit binding | 8.83E-04 |
| 34 | GO:0022891: substrate-specific transmembrane transporter activity | 9.13E-04 |
| 35 | GO:0003727: single-stranded RNA binding | 9.89E-04 |
| 36 | GO:0004845: uracil phosphoribosyltransferase activity | 1.17E-03 |
| 37 | GO:0043495: protein anchor | 1.17E-03 |
| 38 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.17E-03 |
| 39 | GO:0004659: prenyltransferase activity | 1.17E-03 |
| 40 | GO:0004040: amidase activity | 1.48E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 1.48E-03 |
| 42 | GO:0030414: peptidase inhibitor activity | 1.48E-03 |
| 43 | GO:0031177: phosphopantetheine binding | 1.83E-03 |
| 44 | GO:0016462: pyrophosphatase activity | 1.83E-03 |
| 45 | GO:0051920: peroxiredoxin activity | 2.19E-03 |
| 46 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.19E-03 |
| 47 | GO:0004849: uridine kinase activity | 2.19E-03 |
| 48 | GO:0000035: acyl binding | 2.19E-03 |
| 49 | GO:0016168: chlorophyll binding | 2.30E-03 |
| 50 | GO:0008235: metalloexopeptidase activity | 2.58E-03 |
| 51 | GO:0004427: inorganic diphosphatase activity | 2.58E-03 |
| 52 | GO:0019899: enzyme binding | 2.58E-03 |
| 53 | GO:0016209: antioxidant activity | 2.99E-03 |
| 54 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.99E-03 |
| 55 | GO:0008047: enzyme activator activity | 4.81E-03 |
| 56 | GO:0044183: protein binding involved in protein folding | 5.32E-03 |
| 57 | GO:0004177: aminopeptidase activity | 5.32E-03 |
| 58 | GO:0031072: heat shock protein binding | 6.38E-03 |
| 59 | GO:0003690: double-stranded DNA binding | 6.43E-03 |
| 60 | GO:0004650: polygalacturonase activity | 8.07E-03 |
| 61 | GO:0005528: FK506 binding | 8.70E-03 |
| 62 | GO:0015035: protein disulfide oxidoreductase activity | 9.10E-03 |
| 63 | GO:0043424: protein histidine kinase binding | 9.33E-03 |
| 64 | GO:0004176: ATP-dependent peptidase activity | 9.97E-03 |
| 65 | GO:0047134: protein-disulfide reductase activity | 1.27E-02 |
| 66 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.41E-02 |
| 67 | GO:0015297: antiporter activity | 1.46E-02 |
| 68 | GO:0004791: thioredoxin-disulfide reductase activity | 1.49E-02 |
| 69 | GO:0003743: translation initiation factor activity | 1.79E-02 |
| 70 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.80E-02 |
| 71 | GO:0008483: transaminase activity | 1.96E-02 |
| 72 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.96E-02 |
| 73 | GO:0008237: metallopeptidase activity | 1.96E-02 |
| 74 | GO:0008375: acetylglucosaminyltransferase activity | 2.30E-02 |
| 75 | GO:0004601: peroxidase activity | 2.38E-02 |
| 76 | GO:0102483: scopolin beta-glucosidase activity | 2.39E-02 |
| 77 | GO:0003746: translation elongation factor activity | 3.05E-02 |
| 78 | GO:0008422: beta-glucosidase activity | 3.24E-02 |
| 79 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.86E-02 |
| 80 | GO:0005509: calcium ion binding | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 9.02E-65 |
| 4 | GO:0009570: chloroplast stroma | 7.95E-45 |
| 5 | GO:0009941: chloroplast envelope | 8.50E-35 |
| 6 | GO:0009579: thylakoid | 1.05E-25 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.46E-24 |
| 8 | GO:0009534: chloroplast thylakoid | 1.54E-11 |
| 9 | GO:0005840: ribosome | 3.48E-11 |
| 10 | GO:0031977: thylakoid lumen | 1.50E-09 |
| 11 | GO:0009543: chloroplast thylakoid lumen | 1.82E-09 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 7.85E-07 |
| 13 | GO:0009536: plastid | 1.28E-05 |
| 14 | GO:0019898: extrinsic component of membrane | 1.12E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.67E-04 |
| 16 | GO:0009515: granal stacked thylakoid | 1.67E-04 |
| 17 | GO:0010319: stromule | 1.77E-04 |
| 18 | GO:0031969: chloroplast membrane | 1.85E-04 |
| 19 | GO:0000311: plastid large ribosomal subunit | 3.60E-04 |
| 20 | GO:0009508: plastid chromosome | 4.10E-04 |
| 21 | GO:0010007: magnesium chelatase complex | 6.19E-04 |
| 22 | GO:0015935: small ribosomal subunit | 7.70E-04 |
| 23 | GO:0009523: photosystem II | 1.42E-03 |
| 24 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.83E-03 |
| 25 | GO:0009295: nucleoid | 1.95E-03 |
| 26 | GO:0015934: large ribosomal subunit | 3.27E-03 |
| 27 | GO:0009539: photosystem II reaction center | 3.41E-03 |
| 28 | GO:0005763: mitochondrial small ribosomal subunit | 3.86E-03 |
| 29 | GO:0048046: apoplast | 4.14E-03 |
| 30 | GO:0030095: chloroplast photosystem II | 6.93E-03 |
| 31 | GO:0000312: plastid small ribosomal subunit | 6.93E-03 |
| 32 | GO:0009706: chloroplast inner membrane | 8.84E-03 |
| 33 | GO:0042651: thylakoid membrane | 9.33E-03 |
| 34 | GO:0009532: plastid stroma | 9.97E-03 |
| 35 | GO:0005759: mitochondrial matrix | 1.39E-02 |
| 36 | GO:0005778: peroxisomal membrane | 1.96E-02 |