Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G43940

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
2GO:0048227: plasma membrane to endosome transport0.00E+00
3GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
4GO:0006592: ornithine biosynthetic process0.00E+00
5GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway0.00E+00
6GO:0031990: mRNA export from nucleus in response to heat stress0.00E+00
7GO:0032780: negative regulation of ATPase activity0.00E+00
8GO:0006482: protein demethylation0.00E+00
9GO:0002376: immune system process0.00E+00
10GO:0006090: pyruvate metabolic process6.48E-07
11GO:0051788: response to misfolded protein3.07E-06
12GO:0006101: citrate metabolic process3.07E-06
13GO:0010150: leaf senescence1.93E-05
14GO:0001676: long-chain fatty acid metabolic process2.51E-05
15GO:0055114: oxidation-reduction process3.05E-05
16GO:0006979: response to oxidative stress6.05E-05
17GO:0006097: glyoxylate cycle7.21E-05
18GO:0043248: proteasome assembly1.05E-04
19GO:0045454: cell redox homeostasis1.59E-04
20GO:0046686: response to cadmium ion2.38E-04
21GO:0006605: protein targeting2.41E-04
22GO:0006102: isocitrate metabolic process2.41E-04
23GO:1901183: positive regulation of camalexin biosynthetic process2.57E-04
24GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex2.57E-04
25GO:0080136: priming of cellular response to stress2.57E-04
26GO:0048455: stamen formation2.57E-04
27GO:0006772: thiamine metabolic process2.57E-04
28GO:0035266: meristem growth2.57E-04
29GO:0007292: female gamete generation2.57E-04
30GO:0006805: xenobiotic metabolic process2.57E-04
31GO:0051938: L-glutamate import2.57E-04
32GO:1990641: response to iron ion starvation2.57E-04
33GO:0080173: male-female gamete recognition during double fertilization2.57E-04
34GO:0010120: camalexin biosynthetic process2.98E-04
35GO:0043069: negative regulation of programmed cell death4.99E-04
36GO:0009812: flavonoid metabolic process5.68E-04
37GO:0019374: galactolipid metabolic process5.68E-04
38GO:1902000: homogentisate catabolic process5.68E-04
39GO:0080026: response to indolebutyric acid5.68E-04
40GO:0019441: tryptophan catabolic process to kynurenine5.68E-04
41GO:0045948: positive regulation of translational initiation5.68E-04
42GO:0043091: L-arginine import5.68E-04
43GO:0006597: spermine biosynthetic process5.68E-04
44GO:1905182: positive regulation of urease activity5.68E-04
45GO:0051262: protein tetramerization5.68E-04
46GO:0007051: spindle organization5.68E-04
47GO:0019521: D-gluconate metabolic process5.68E-04
48GO:0006108: malate metabolic process7.47E-04
49GO:0006499: N-terminal protein myristoylation7.51E-04
50GO:0010359: regulation of anion channel activity9.22E-04
51GO:0051176: positive regulation of sulfur metabolic process9.22E-04
52GO:0071494: cellular response to UV-C9.22E-04
53GO:0009072: aromatic amino acid family metabolic process9.22E-04
54GO:0060968: regulation of gene silencing9.22E-04
55GO:1900055: regulation of leaf senescence9.22E-04
56GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay9.22E-04
57GO:0090351: seedling development9.38E-04
58GO:0006099: tricarboxylic acid cycle9.43E-04
59GO:0006631: fatty acid metabolic process1.10E-03
60GO:0009408: response to heat1.17E-03
61GO:0009399: nitrogen fixation1.32E-03
62GO:0080024: indolebutyric acid metabolic process1.32E-03
63GO:0006624: vacuolar protein processing1.32E-03
64GO:0007231: osmosensory signaling pathway1.32E-03
65GO:2001289: lipid X metabolic process1.32E-03
66GO:0072334: UDP-galactose transmembrane transport1.32E-03
67GO:0010363: regulation of plant-type hypersensitive response1.76E-03
68GO:0010188: response to microbial phytotoxin1.76E-03
69GO:0006878: cellular copper ion homeostasis1.76E-03
70GO:0006542: glutamine biosynthetic process1.76E-03
71GO:0033500: carbohydrate homeostasis1.76E-03
72GO:1902584: positive regulation of response to water deprivation1.76E-03
73GO:2000038: regulation of stomatal complex development1.76E-03
74GO:0051603: proteolysis involved in cellular protein catabolic process1.86E-03
75GO:0045927: positive regulation of growth2.25E-03
76GO:0006564: L-serine biosynthetic process2.25E-03
77GO:0009229: thiamine diphosphate biosynthetic process2.25E-03
78GO:0006405: RNA export from nucleus2.25E-03
79GO:0030308: negative regulation of cell growth2.25E-03
80GO:0006662: glycerol ether metabolic process2.26E-03
81GO:0009267: cellular response to starvation2.77E-03
82GO:0006596: polyamine biosynthetic process2.77E-03
83GO:0035435: phosphate ion transmembrane transport2.77E-03
84GO:0006014: D-ribose metabolic process2.77E-03
85GO:0000060: protein import into nucleus, translocation2.77E-03
86GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.77E-03
87GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.77E-03
88GO:0006751: glutathione catabolic process2.77E-03
89GO:0048827: phyllome development2.77E-03
90GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation2.77E-03
91GO:0048232: male gamete generation2.77E-03
92GO:1902456: regulation of stomatal opening2.77E-03
93GO:0010193: response to ozone2.79E-03
94GO:0007264: small GTPase mediated signal transduction2.98E-03
95GO:0009082: branched-chain amino acid biosynthetic process3.33E-03
96GO:0006694: steroid biosynthetic process3.33E-03
97GO:0098655: cation transmembrane transport3.33E-03
98GO:0034389: lipid particle organization3.33E-03
99GO:0009099: valine biosynthetic process3.33E-03
100GO:0010189: vitamin E biosynthetic process3.33E-03
101GO:2000037: regulation of stomatal complex patterning3.33E-03
102GO:0015977: carbon fixation3.33E-03
103GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.93E-03
104GO:0071669: plant-type cell wall organization or biogenesis3.93E-03
105GO:0000082: G1/S transition of mitotic cell cycle3.93E-03
106GO:0050790: regulation of catalytic activity3.93E-03
107GO:0048528: post-embryonic root development3.93E-03
108GO:0043090: amino acid import3.93E-03
109GO:0080186: developmental vegetative growth3.93E-03
110GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.93E-03
111GO:0009615: response to virus4.03E-03
112GO:0006508: proteolysis4.10E-03
113GO:0006974: cellular response to DNA damage stimulus4.49E-03
114GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.56E-03
115GO:0010078: maintenance of root meristem identity4.56E-03
116GO:0006644: phospholipid metabolic process4.56E-03
117GO:0009651: response to salt stress5.05E-03
118GO:0006367: transcription initiation from RNA polymerase II promoter5.22E-03
119GO:0009097: isoleucine biosynthetic process5.22E-03
120GO:0006526: arginine biosynthetic process5.22E-03
121GO:0030968: endoplasmic reticulum unfolded protein response5.22E-03
122GO:0006511: ubiquitin-dependent protein catabolic process5.51E-03
123GO:0048767: root hair elongation5.52E-03
124GO:0006098: pentose-phosphate shunt5.92E-03
125GO:0009821: alkaloid biosynthetic process5.92E-03
126GO:0009051: pentose-phosphate shunt, oxidative branch5.92E-03
127GO:0010043: response to zinc ion6.07E-03
128GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway6.64E-03
129GO:0071577: zinc II ion transmembrane transport6.64E-03
130GO:0009098: leucine biosynthetic process6.64E-03
131GO:0034599: cellular response to oxidative stress6.96E-03
132GO:0000103: sulfate assimilation7.40E-03
133GO:0048829: root cap development7.40E-03
134GO:0009299: mRNA transcription7.40E-03
135GO:0072593: reactive oxygen species metabolic process8.19E-03
136GO:0043085: positive regulation of catalytic activity8.19E-03
137GO:0010015: root morphogenesis8.19E-03
138GO:0010102: lateral root morphogenesis9.85E-03
139GO:0006807: nitrogen compound metabolic process9.85E-03
140GO:0010229: inflorescence development9.85E-03
141GO:0007034: vacuolar transport1.07E-02
142GO:0009933: meristem structural organization1.07E-02
143GO:0042742: defense response to bacterium1.10E-02
144GO:0009901: anther dehiscence1.16E-02
145GO:0009555: pollen development1.21E-02
146GO:0034976: response to endoplasmic reticulum stress1.25E-02
147GO:0006071: glycerol metabolic process1.25E-02
148GO:0009611: response to wounding1.25E-02
149GO:2000377: regulation of reactive oxygen species metabolic process1.35E-02
150GO:0009626: plant-type hypersensitive response1.46E-02
151GO:0009620: response to fungus1.51E-02
152GO:0006366: transcription from RNA polymerase II promoter1.55E-02
153GO:0003333: amino acid transmembrane transport1.55E-02
154GO:0051260: protein homooligomerization1.55E-02
155GO:0016569: covalent chromatin modification1.56E-02
156GO:0030433: ubiquitin-dependent ERAD pathway1.65E-02
157GO:0016226: iron-sulfur cluster assembly1.65E-02
158GO:0010227: floral organ abscission1.76E-02
159GO:0006012: galactose metabolic process1.76E-02
160GO:0010091: trichome branching1.86E-02
161GO:0051028: mRNA transport1.97E-02
162GO:0034220: ion transmembrane transport2.09E-02
163GO:0010118: stomatal movement2.09E-02
164GO:0006629: lipid metabolic process2.10E-02
165GO:0010183: pollen tube guidance2.43E-02
166GO:0019252: starch biosynthetic process2.43E-02
167GO:0000302: response to reactive oxygen species2.56E-02
168GO:0006635: fatty acid beta-oxidation2.56E-02
169GO:0010583: response to cyclopentenone2.68E-02
170GO:0031047: gene silencing by RNA2.68E-02
171GO:0030163: protein catabolic process2.80E-02
172GO:0006464: cellular protein modification process2.93E-02
173GO:0010252: auxin homeostasis2.93E-02
174GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.20E-02
175GO:0006470: protein dephosphorylation3.27E-02
176GO:0006468: protein phosphorylation3.38E-02
177GO:0010468: regulation of gene expression3.42E-02
178GO:0010029: regulation of seed germination3.46E-02
179GO:0009607: response to biotic stimulus3.46E-02
180GO:0042128: nitrate assimilation3.59E-02
181GO:0008219: cell death4.01E-02
182GO:0048481: plant ovule development4.01E-02
183GO:0009738: abscisic acid-activated signaling pathway4.11E-02
184GO:0010311: lateral root formation4.16E-02
185GO:0009407: toxin catabolic process4.30E-02
186GO:0007568: aging4.45E-02
187GO:0010119: regulation of stomatal movement4.45E-02
188GO:0006865: amino acid transport4.60E-02
189GO:0045087: innate immune response4.75E-02
190GO:0009853: photorespiration4.75E-02
RankGO TermAdjusted P value
1GO:0051723: protein methylesterase activity0.00E+00
2GO:0003846: 2-acylglycerol O-acyltransferase activity0.00E+00
3GO:0008777: acetylornithine deacetylase activity0.00E+00
4GO:0042030: ATPase inhibitor activity0.00E+00
5GO:0016504: peptidase activator activity0.00E+00
6GO:0016034: maleylacetoacetate isomerase activity0.00E+00
7GO:0050342: tocopherol O-methyltransferase activity0.00E+00
8GO:0051670: inulinase activity0.00E+00
9GO:0004622: lysophospholipase activity0.00E+00
10GO:0050242: pyruvate, phosphate dikinase activity0.00E+00
11GO:0070577: lysine-acetylated histone binding0.00E+00
12GO:0003994: aconitate hydratase activity3.07E-06
13GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor4.54E-05
14GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity4.54E-05
15GO:0004470: malic enzyme activity4.54E-05
16GO:0031593: polyubiquitin binding1.05E-04
17GO:0102391: decanoate--CoA ligase activity1.45E-04
18GO:0004467: long-chain fatty acid-CoA ligase activity1.90E-04
19GO:0004112: cyclic-nucleotide phosphodiesterase activity2.57E-04
20GO:0051669: fructan beta-fructosidase activity2.57E-04
21GO:0004788: thiamine diphosphokinase activity2.57E-04
22GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity2.57E-04
23GO:0019707: protein-cysteine S-acyltransferase activity2.57E-04
24GO:0031219: levanase activity2.57E-04
25GO:0016768: spermine synthase activity2.57E-04
26GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity2.57E-04
27GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.57E-04
28GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity2.57E-04
29GO:0019172: glyoxalase III activity5.68E-04
30GO:0004061: arylformamidase activity5.68E-04
31GO:0015036: disulfide oxidoreductase activity5.68E-04
32GO:0008517: folic acid transporter activity5.68E-04
33GO:0004566: beta-glucuronidase activity5.68E-04
34GO:0004617: phosphoglycerate dehydrogenase activity5.68E-04
35GO:0004766: spermidine synthase activity5.68E-04
36GO:0018708: thiol S-methyltransferase activity5.68E-04
37GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism7.47E-04
38GO:0005524: ATP binding7.86E-04
39GO:0016174: NAD(P)H oxidase activity9.22E-04
40GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity9.22E-04
41GO:0003840: gamma-glutamyltransferase activity9.22E-04
42GO:0036374: glutathione hydrolase activity9.22E-04
43GO:0008964: phosphoenolpyruvate carboxylase activity9.22E-04
44GO:0016805: dipeptidase activity9.22E-04
45GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity9.22E-04
46GO:0005093: Rab GDP-dissociation inhibitor activity9.22E-04
47GO:0016151: nickel cation binding9.22E-04
48GO:0008430: selenium binding9.22E-04
49GO:0005047: signal recognition particle binding9.22E-04
50GO:0015181: arginine transmembrane transporter activity1.32E-03
51GO:0052656: L-isoleucine transaminase activity1.32E-03
52GO:0052654: L-leucine transaminase activity1.32E-03
53GO:0004300: enoyl-CoA hydratase activity1.32E-03
54GO:0052655: L-valine transaminase activity1.32E-03
55GO:0015189: L-lysine transmembrane transporter activity1.32E-03
56GO:0001653: peptide receptor activity1.32E-03
57GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.32E-03
58GO:0051287: NAD binding1.55E-03
59GO:0005507: copper ion binding1.66E-03
60GO:0005313: L-glutamate transmembrane transporter activity1.76E-03
61GO:0004084: branched-chain-amino-acid transaminase activity1.76E-03
62GO:0010279: indole-3-acetic acid amido synthetase activity1.76E-03
63GO:0070628: proteasome binding1.76E-03
64GO:0016491: oxidoreductase activity1.79E-03
65GO:0005515: protein binding1.80E-03
66GO:0047134: protein-disulfide reductase activity1.95E-03
67GO:0005452: inorganic anion exchanger activity2.25E-03
68GO:0008948: oxaloacetate decarboxylase activity2.25E-03
69GO:0005496: steroid binding2.25E-03
70GO:0000104: succinate dehydrogenase activity2.25E-03
71GO:0004356: glutamate-ammonia ligase activity2.25E-03
72GO:0015301: anion:anion antiporter activity2.25E-03
73GO:0005459: UDP-galactose transmembrane transporter activity2.25E-03
74GO:0004791: thioredoxin-disulfide reductase activity2.43E-03
75GO:0016853: isomerase activity2.43E-03
76GO:0031369: translation initiation factor binding2.77E-03
77GO:0036402: proteasome-activating ATPase activity2.77E-03
78GO:0015035: protein disulfide oxidoreductase activity2.89E-03
79GO:0004197: cysteine-type endopeptidase activity2.98E-03
80GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.18E-03
81GO:0004747: ribokinase activity3.33E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity3.33E-03
83GO:0008113: peptide-methionine (S)-S-oxide reductase activity3.33E-03
84GO:0051920: peroxiredoxin activity3.33E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.33E-03
86GO:0004620: phospholipase activity3.93E-03
87GO:0008235: metalloexopeptidase activity3.93E-03
88GO:0008121: ubiquinol-cytochrome-c reductase activity3.93E-03
89GO:0008865: fructokinase activity4.56E-03
90GO:0004714: transmembrane receptor protein tyrosine kinase activity4.56E-03
91GO:0016209: antioxidant activity4.56E-03
92GO:0004034: aldose 1-epimerase activity4.56E-03
93GO:0003924: GTPase activity5.07E-03
94GO:0005096: GTPase activator activity5.52E-03
95GO:0008889: glycerophosphodiester phosphodiesterase activity5.92E-03
96GO:0071949: FAD binding5.92E-03
97GO:0015174: basic amino acid transmembrane transporter activity6.64E-03
98GO:0047617: acyl-CoA hydrolase activity6.64E-03
99GO:0016844: strictosidine synthase activity6.64E-03
100GO:0008047: enzyme activator activity7.40E-03
101GO:0051539: 4 iron, 4 sulfur cluster binding7.59E-03
102GO:0005525: GTP binding7.69E-03
103GO:0008794: arsenate reductase (glutaredoxin) activity8.19E-03
104GO:0004177: aminopeptidase activity8.19E-03
105GO:0008559: xenobiotic-transporting ATPase activity8.19E-03
106GO:0004364: glutathione transferase activity8.25E-03
107GO:0005509: calcium ion binding9.59E-03
108GO:0004601: peroxidase activity9.74E-03
109GO:0004022: alcohol dehydrogenase (NAD) activity9.85E-03
110GO:0005315: inorganic phosphate transmembrane transporter activity9.85E-03
111GO:0008131: primary amine oxidase activity1.07E-02
112GO:0004175: endopeptidase activity1.07E-02
113GO:0016301: kinase activity1.14E-02
114GO:0017025: TBP-class protein binding1.16E-02
115GO:0016298: lipase activity1.20E-02
116GO:0015171: amino acid transmembrane transporter activity1.29E-02
117GO:0008234: cysteine-type peptidase activity1.29E-02
118GO:0031418: L-ascorbic acid binding1.35E-02
119GO:0005385: zinc ion transmembrane transporter activity1.35E-02
120GO:0008324: cation transmembrane transporter activity1.45E-02
121GO:0004298: threonine-type endopeptidase activity1.55E-02
122GO:0004707: MAP kinase activity1.55E-02
123GO:0019706: protein-cysteine S-palmitoyltransferase activity1.55E-02
124GO:0003727: single-stranded RNA binding1.86E-02
125GO:0003756: protein disulfide isomerase activity1.86E-02
126GO:0046873: metal ion transmembrane transporter activity2.20E-02
127GO:0008536: Ran GTPase binding2.20E-02
128GO:0005516: calmodulin binding2.23E-02
129GO:0048038: quinone binding2.56E-02
130GO:0004674: protein serine/threonine kinase activity2.98E-02
131GO:0008483: transaminase activity3.06E-02
132GO:0008237: metallopeptidase activity3.06E-02
133GO:0016597: amino acid binding3.19E-02
134GO:0051213: dioxygenase activity3.32E-02
135GO:0015250: water channel activity3.32E-02
136GO:0009931: calcium-dependent protein serine/threonine kinase activity3.59E-02
137GO:0016887: ATPase activity3.62E-02
138GO:0004683: calmodulin-dependent protein kinase activity3.73E-02
139GO:0005215: transporter activity3.99E-02
140GO:0000287: magnesium ion binding4.34E-02
141GO:0030145: manganese ion binding4.45E-02
142GO:0050897: cobalt ion binding4.45E-02
143GO:0003697: single-stranded DNA binding4.75E-02
144GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.75E-02
RankGO TermAdjusted P value
1GO:0019822: P4 peroxisome0.00E+00
2GO:0005785: signal recognition particle receptor complex0.00E+00
3GO:0005886: plasma membrane9.55E-06
4GO:0005829: cytosol1.65E-05
5GO:0005773: vacuole2.69E-05
6GO:0005783: endoplasmic reticulum9.57E-05
7GO:0005774: vacuolar membrane2.34E-04
8GO:0000502: proteasome complex2.57E-04
9GO:0000138: Golgi trans cisterna2.57E-04
10GO:0005777: peroxisome2.71E-04
11GO:0005618: cell wall3.64E-04
12GO:0008540: proteasome regulatory particle, base subcomplex4.27E-04
13GO:0031314: extrinsic component of mitochondrial inner membrane5.68E-04
14GO:0030139: endocytic vesicle9.22E-04
15GO:0046861: glyoxysomal membrane9.22E-04
16GO:0000323: lytic vacuole1.32E-03
17GO:0005839: proteasome core complex1.39E-03
18GO:0005794: Golgi apparatus3.04E-03
19GO:0031597: cytosolic proteasome complex3.33E-03
20GO:0030173: integral component of Golgi membrane3.33E-03
21GO:0005623: cell3.83E-03
22GO:0031595: nuclear proteasome complex3.93E-03
23GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.56E-03
24GO:0016020: membrane4.94E-03
25GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.22E-03
26GO:0005811: lipid particle5.22E-03
27GO:0009514: glyoxysome5.22E-03
28GO:0005765: lysosomal membrane8.19E-03
29GO:0005665: DNA-directed RNA polymerase II, core complex9.00E-03
30GO:0005750: mitochondrial respiratory chain complex III1.07E-02
31GO:0005764: lysosome1.07E-02
32GO:0030176: integral component of endoplasmic reticulum membrane1.16E-02
33GO:0005769: early endosome1.25E-02
34GO:0005737: cytoplasm1.39E-02
35GO:0045271: respiratory chain complex I1.45E-02
36GO:0019898: extrinsic component of membrane2.43E-02
37GO:0005778: peroxisomal membrane3.06E-02
38GO:0000932: P-body3.32E-02
39GO:0005788: endoplasmic reticulum lumen3.46E-02
40GO:0005643: nuclear pore4.01E-02
41GO:0000325: plant-type vacuole4.45E-02
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Gene type



Gene DE type