co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0036258: multivesicular body assembly	0.00E+00
3	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.21E-05
4	GO:0006468: protein phosphorylation	5.04E-05
5	GO:0009962: regulation of flavonoid biosynthetic process	8.25E-05
6	GO:0007166: cell surface receptor signaling pathway	1.01E-04
7	GO:0046740: transport of virus in host, cell to cell	1.97E-04
8	GO:0071395: cellular response to jasmonic acid stimulus	1.97E-04
9	GO:2000072: regulation of defense response to fungus, incompatible interaction	1.97E-04
10	GO:0009838: abscission	1.97E-04
11	GO:0010618: aerenchyma formation	1.97E-04
12	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.29E-04
13	GO:0048586: regulation of long-day photoperiodism, flowering	3.29E-04
14	GO:0042631: cellular response to water deprivation	4.61E-04
15	GO:0070676: intralumenal vesicle formation	4.75E-04
16	GO:0010071: root meristem specification	4.75E-04
17	GO:0070301: cellular response to hydrogen peroxide	4.75E-04
18	GO:0071323: cellular response to chitin	4.75E-04
19	GO:0006904: vesicle docking involved in exocytosis	7.76E-04
20	GO:0018344: protein geranylgeranylation	8.00E-04
21	GO:0000304: response to singlet oxygen	8.00E-04
22	GO:0030041: actin filament polymerization	8.00E-04
23	GO:0010942: positive regulation of cell death	9.77E-04
24	GO:0009117: nucleotide metabolic process	9.77E-04
25	GO:0048573: photoperiodism, flowering	1.01E-03
26	GO:0010555: response to mannitol	1.16E-03
27	GO:0010310: regulation of hydrogen peroxide metabolic process	1.16E-03
28	GO:2000067: regulation of root morphogenesis	1.16E-03
29	GO:0000911: cytokinesis by cell plate formation	1.16E-03
30	GO:0009094: L-phenylalanine biosynthetic process	1.16E-03
31	GO:0009612: response to mechanical stimulus	1.16E-03
32	GO:0006952: defense response	1.22E-03
33	GO:0071446: cellular response to salicylic acid stimulus	1.36E-03
34	GO:0045087: innate immune response	1.40E-03
35	GO:0010492: maintenance of shoot apical meristem identity	1.57E-03
36	GO:0010078: maintenance of root meristem identity	1.57E-03
37	GO:0007186: G-protein coupled receptor signaling pathway	1.79E-03
38	GO:0006367: transcription initiation from RNA polymerase II promoter	1.79E-03
39	GO:0046685: response to arsenic-containing substance	2.02E-03
40	GO:0048268: clathrin coat assembly	2.26E-03
41	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.26E-03
42	GO:0016571: histone methylation	2.26E-03
43	GO:0006896: Golgi to vacuole transport	2.51E-03
44	GO:0009750: response to fructose	2.77E-03
45	GO:0048229: gametophyte development	2.77E-03
46	GO:0030148: sphingolipid biosynthetic process	2.77E-03
47	GO:0000266: mitochondrial fission	3.03E-03
48	GO:0010053: root epidermal cell differentiation	3.88E-03
49	GO:0042343: indole glucosinolate metabolic process	3.88E-03
50	GO:0010187: negative regulation of seed germination	4.48E-03
51	GO:0015031: protein transport	4.54E-03
52	GO:0006874: cellular calcium ion homeostasis	4.80E-03
53	GO:0098542: defense response to other organism	5.12E-03
54	GO:0010017: red or far-red light signaling pathway	5.45E-03
55	GO:0071215: cellular response to abscisic acid stimulus	5.78E-03
56	GO:0009306: protein secretion	6.13E-03
57	GO:0080022: primary root development	6.83E-03
58	GO:0010468: regulation of gene expression	6.98E-03
59	GO:0009617: response to bacterium	6.98E-03
60	GO:0071472: cellular response to salt stress	7.20E-03
61	GO:0061025: membrane fusion	7.57E-03
62	GO:0048544: recognition of pollen	7.57E-03
63	GO:0055072: iron ion homeostasis	7.95E-03
64	GO:0009749: response to glucose	7.95E-03
65	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.33E-03
66	GO:0006891: intra-Golgi vesicle-mediated transport	8.33E-03
67	GO:0007275: multicellular organism development	8.79E-03
68	GO:0030163: protein catabolic process	9.12E-03
69	GO:0007165: signal transduction	9.59E-03
70	GO:0000910: cytokinesis	1.04E-02
71	GO:0009911: positive regulation of flower development	1.08E-02
72	GO:0001666: response to hypoxia	1.08E-02
73	GO:0009627: systemic acquired resistance	1.17E-02
74	GO:0046777: protein autophosphorylation	1.20E-02
75	GO:0044550: secondary metabolite biosynthetic process	1.22E-02
76	GO:0006499: N-terminal protein myristoylation	1.39E-02
77	GO:0010043: response to zinc ion	1.44E-02
78	GO:0009867: jasmonic acid mediated signaling pathway	1.54E-02
79	GO:0006629: lipid metabolic process	1.66E-02
80	GO:0009408: response to heat	1.66E-02
81	GO:0006887: exocytosis	1.74E-02
82	GO:0006897: endocytosis	1.74E-02
83	GO:0006631: fatty acid metabolic process	1.74E-02
84	GO:0009744: response to sucrose	1.84E-02
85	GO:0051707: response to other organism	1.84E-02
86	GO:0009644: response to high light intensity	1.95E-02
87	GO:0031347: regulation of defense response	2.11E-02
88	GO:0009626: plant-type hypersensitive response	2.68E-02
89	GO:0009620: response to fungus	2.74E-02
90	GO:0016569: covalent chromatin modification	2.80E-02
91	GO:0009738: abscisic acid-activated signaling pathway	2.86E-02
92	GO:0018105: peptidyl-serine phosphorylation	2.99E-02
93	GO:0035556: intracellular signal transduction	3.12E-02
94	GO:0006633: fatty acid biosynthetic process	4.04E-02
95	GO:0006413: translational initiation	4.11E-02
96	GO:0040008: regulation of growth	4.18E-02
97	GO:0016310: phosphorylation	4.35E-02
98	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0005524: ATP binding	1.14E-05
2	GO:0004143: diacylglycerol kinase activity	3.21E-05
3	GO:0003951: NAD+ kinase activity	5.37E-05
4	GO:0004713: protein tyrosine kinase activity	9.71E-05
5	GO:0004566: beta-glucuronidase activity	1.97E-04
6	GO:0045140: inositol phosphoceramide synthase activity	1.97E-04
7	GO:0004385: guanylate kinase activity	1.97E-04
8	GO:0001664: G-protein coupled receptor binding	3.29E-04
9	GO:0031683: G-protein beta/gamma-subunit complex binding	3.29E-04
10	GO:0004663: Rab geranylgeranyltransferase activity	3.29E-04
11	GO:0004871: signal transducer activity	3.54E-04
12	GO:0016301: kinase activity	6.10E-04
13	GO:0047769: arogenate dehydratase activity	6.32E-04
14	GO:0004664: prephenate dehydratase activity	6.32E-04
15	GO:0004674: protein serine/threonine kinase activity	9.45E-04
16	GO:0047714: galactolipase activity	9.77E-04
17	GO:0004806: triglyceride lipase activity	1.01E-03
18	GO:0102391: decanoate--CoA ligase activity	1.16E-03
19	GO:0004467: long-chain fatty acid-CoA ligase activity	1.36E-03
20	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.52E-03
21	GO:0035064: methylated histone binding	1.57E-03
22	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	1.79E-03
23	GO:0071949: FAD binding	2.02E-03
24	GO:0045309: protein phosphorylated amino acid binding	2.26E-03
25	GO:0042803: protein homodimerization activity	2.28E-03
26	GO:0005515: protein binding	2.43E-03
27	GO:0005545: 1-phosphatidylinositol binding	2.51E-03
28	GO:0019904: protein domain specific binding	2.77E-03
29	GO:0031072: heat shock protein binding	3.31E-03
30	GO:0005217: intracellular ligand-gated ion channel activity	3.88E-03
31	GO:0008061: chitin binding	3.88E-03
32	GO:0004970: ionotropic glutamate receptor activity	3.88E-03
33	GO:0003954: NADH dehydrogenase activity	4.48E-03
34	GO:0043130: ubiquitin binding	4.48E-03
35	GO:0043424: protein histidine kinase binding	4.80E-03
36	GO:0008565: protein transporter activity	5.07E-03
37	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.45E-03
38	GO:0004672: protein kinase activity	5.65E-03
39	GO:0030276: clathrin binding	7.20E-03
40	GO:0001085: RNA polymerase II transcription factor binding	7.20E-03
41	GO:0030246: carbohydrate binding	8.45E-03
42	GO:0016597: amino acid binding	1.04E-02
43	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.17E-02
44	GO:0004683: calmodulin-dependent protein kinase activity	1.21E-02
45	GO:0030247: polysaccharide binding	1.21E-02
46	GO:0004222: metalloendopeptidase activity	1.39E-02
47	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.44E-02
48	GO:0003924: GTPase activity	1.66E-02
49	GO:0005484: SNAP receptor activity	1.84E-02
50	GO:0035091: phosphatidylinositol binding	1.95E-02
51	GO:0016298: lipase activity	2.33E-02
52	GO:0003779: actin binding	2.86E-02
53	GO:0051082: unfolded protein binding	2.93E-02
54	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.76E-02
55	GO:0008017: microtubule binding	4.46E-02
56	GO:0008194: UDP-glycosyltransferase activity	4.67E-02
57	GO:0003743: translation initiation factor activity	4.82E-02
58	GO:0005525: GTP binding	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005886: plasma membrane	8.90E-09
3	GO:0005911: cell-cell junction	8.25E-05
4	GO:0031304: intrinsic component of mitochondrial inner membrane	1.97E-04
5	GO:0030136: clathrin-coated vesicle	4.26E-04
6	GO:0070062: extracellular exosome	4.75E-04
7	GO:0005968: Rab-protein geranylgeranyltransferase complex	4.75E-04
8	GO:0019898: extrinsic component of membrane	5.70E-04
9	GO:0000813: ESCRT I complex	8.00E-04
10	GO:0005765: lysosomal membrane	2.77E-03
11	GO:0005834: heterotrimeric G-protein complex	3.02E-03
12	GO:0005795: Golgi stack	3.88E-03
13	GO:0009524: phragmoplast	4.48E-03
14	GO:0005905: clathrin-coated pit	5.12E-03
15	GO:0009504: cell plate	7.95E-03
16	GO:0000145: exocyst	8.73E-03
17	GO:0005667: transcription factor complex	1.17E-02
18	GO:0019005: SCF ubiquitin ligase complex	1.30E-02
19	GO:0005794: Golgi apparatus	1.54E-02
20	GO:0031902: late endosome membrane	1.74E-02
21	GO:0005829: cytosol	1.83E-02
22	GO:0005856: cytoskeleton	2.00E-02
23	GO:0016021: integral component of membrane	2.09E-02
24	GO:0005635: nuclear envelope	2.39E-02
25	GO:0005777: peroxisome	3.39E-02
26	GO:0005773: vacuole	3.85E-02