co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G42240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0010206: photosystem II repair	2.55E-06
5	GO:0000476: maturation of 4.5S rRNA	1.42E-04
6	GO:0000967: rRNA 5'-end processing	1.42E-04
7	GO:0043266: regulation of potassium ion transport	1.42E-04
8	GO:0010480: microsporocyte differentiation	1.42E-04
9	GO:0031338: regulation of vesicle fusion	1.42E-04
10	GO:0000481: maturation of 5S rRNA	1.42E-04
11	GO:2000021: regulation of ion homeostasis	1.42E-04
12	GO:0034337: RNA folding	1.42E-04
13	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.42E-04
14	GO:1900865: chloroplast RNA modification	1.80E-04
15	GO:0034470: ncRNA processing	3.25E-04
16	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.25E-04
17	GO:0043617: cellular response to sucrose starvation	5.33E-04
18	GO:0090630: activation of GTPase activity	5.33E-04
19	GO:2001295: malonyl-CoA biosynthetic process	5.33E-04
20	GO:0016556: mRNA modification	7.63E-04
21	GO:0009226: nucleotide-sugar biosynthetic process	7.63E-04
22	GO:0009741: response to brassinosteroid	9.96E-04
23	GO:0010158: abaxial cell fate specification	1.28E-03
24	GO:1902183: regulation of shoot apical meristem development	1.28E-03
25	GO:0030163: protein catabolic process	1.38E-03
26	GO:0000470: maturation of LSU-rRNA	1.57E-03
27	GO:0016554: cytidine to uridine editing	1.57E-03
28	GO:0000741: karyogamy	1.57E-03
29	GO:0006751: glutathione catabolic process	1.57E-03
30	GO:0042549: photosystem II stabilization	1.57E-03
31	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.88E-03
32	GO:0048437: floral organ development	2.21E-03
33	GO:0051510: regulation of unidimensional cell growth	2.21E-03
34	GO:0032508: DNA duplex unwinding	2.56E-03
35	GO:0009657: plastid organization	2.93E-03
36	GO:0006098: pentose-phosphate shunt	3.31E-03
37	GO:0009821: alkaloid biosynthetic process	3.31E-03
38	GO:2000024: regulation of leaf development	3.31E-03
39	GO:0000373: Group II intron splicing	3.31E-03
40	GO:0006779: porphyrin-containing compound biosynthetic process	3.71E-03
41	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
42	GO:0006415: translational termination	4.55E-03
43	GO:0048229: gametophyte development	4.55E-03
44	GO:0012501: programmed cell death	4.99E-03
45	GO:0010075: regulation of meristem growth	5.45E-03
46	GO:0006094: gluconeogenesis	5.45E-03
47	GO:0009767: photosynthetic electron transport chain	5.45E-03
48	GO:0048768: root hair cell tip growth	5.92E-03
49	GO:0010207: photosystem II assembly	5.92E-03
50	GO:0009934: regulation of meristem structural organization	5.92E-03
51	GO:0010030: positive regulation of seed germination	6.41E-03
52	GO:0007010: cytoskeleton organization	7.42E-03
53	GO:0009944: polarity specification of adaxial/abaxial axis	7.42E-03
54	GO:0009742: brassinosteroid mediated signaling pathway	7.46E-03
55	GO:0009753: response to jasmonic acid	7.78E-03
56	GO:0006418: tRNA aminoacylation for protein translation	7.95E-03
57	GO:0061077: chaperone-mediated protein folding	8.49E-03
58	GO:0080092: regulation of pollen tube growth	9.05E-03
59	GO:0009306: protein secretion	1.02E-02
60	GO:0009793: embryo development ending in seed dormancy	1.07E-02
61	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.08E-02
62	GO:0006633: fatty acid biosynthetic process	1.11E-02
63	GO:0042631: cellular response to water deprivation	1.14E-02
64	GO:0048653: anther development	1.14E-02
65	GO:0010154: fruit development	1.20E-02
66	GO:0010197: polar nucleus fusion	1.20E-02
67	GO:0007623: circadian rhythm	1.22E-02
68	GO:0009451: RNA modification	1.25E-02
69	GO:0009646: response to absence of light	1.26E-02
70	GO:0009791: post-embryonic development	1.33E-02
71	GO:0080156: mitochondrial mRNA modification	1.39E-02
72	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.39E-02
73	GO:0002229: defense response to oomycetes	1.39E-02
74	GO:0016032: viral process	1.46E-02
75	GO:0071805: potassium ion transmembrane transport	1.67E-02
76	GO:0006508: proteolysis	1.74E-02
77	GO:0001666: response to hypoxia	1.81E-02
78	GO:0010027: thylakoid membrane organization	1.81E-02
79	GO:0005975: carbohydrate metabolic process	1.81E-02
80	GO:0009826: unidimensional cell growth	1.82E-02
81	GO:0015995: chlorophyll biosynthetic process	2.03E-02
82	GO:0016311: dephosphorylation	2.11E-02
83	GO:0009817: defense response to fungus, incompatible interaction	2.19E-02
84	GO:0048481: plant ovule development	2.19E-02
85	GO:0009723: response to ethylene	2.19E-02
86	GO:0018298: protein-chromophore linkage	2.19E-02
87	GO:0006811: ion transport	2.34E-02
88	GO:0009407: toxin catabolic process	2.34E-02
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
90	GO:0046777: protein autophosphorylation	2.51E-02
91	GO:0006839: mitochondrial transport	2.84E-02
92	GO:0009640: photomorphogenesis	3.10E-02
93	GO:0009744: response to sucrose	3.10E-02
94	GO:0009644: response to high light intensity	3.28E-02
95	GO:0009636: response to toxic substance	3.37E-02
96	GO:0006629: lipid metabolic process	3.46E-02
97	GO:0006855: drug transmembrane transport	3.46E-02
98	GO:0042538: hyperosmotic salinity response	3.65E-02
99	GO:0006364: rRNA processing	3.83E-02
100	GO:0006813: potassium ion transport	3.83E-02
101	GO:0006857: oligopeptide transport	4.02E-02
102	GO:0006412: translation	4.20E-02
103	GO:0006096: glycolytic process	4.32E-02
104	GO:0009620: response to fungus	4.62E-02
105	GO:0009740: gibberellic acid mediated signaling pathway	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
2	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
3	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
4	GO:0005528: FK506 binding	2.11E-05
5	GO:0003867: 4-aminobutyrate transaminase activity	1.42E-04
6	GO:0019843: rRNA binding	1.64E-04
7	GO:0004252: serine-type endopeptidase activity	1.96E-04
8	GO:0008236: serine-type peptidase activity	2.06E-04
9	GO:0004519: endonuclease activity	2.97E-04
10	GO:0015929: hexosaminidase activity	3.25E-04
11	GO:0004563: beta-N-acetylhexosaminidase activity	3.25E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	3.25E-04
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.18E-04
14	GO:0002161: aminoacyl-tRNA editing activity	5.33E-04
15	GO:0004075: biotin carboxylase activity	5.33E-04
16	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	5.33E-04
17	GO:0003723: RNA binding	6.03E-04
18	GO:0016149: translation release factor activity, codon specific	7.63E-04
19	GO:0001872: (1->3)-beta-D-glucan binding	7.63E-04
20	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.01E-03
21	GO:0008374: O-acyltransferase activity	1.28E-03
22	GO:0017137: Rab GTPase binding	1.28E-03
23	GO:0003989: acetyl-CoA carboxylase activity	1.28E-03
24	GO:0004332: fructose-bisphosphate aldolase activity	1.57E-03
25	GO:0042578: phosphoric ester hydrolase activity	1.57E-03
26	GO:0008200: ion channel inhibitor activity	1.57E-03
27	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.88E-03
28	GO:0043022: ribosome binding	2.56E-03
29	GO:0003747: translation release factor activity	3.31E-03
30	GO:0016844: strictosidine synthase activity	3.71E-03
31	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.55E-03
32	GO:0000049: tRNA binding	4.99E-03
33	GO:0004565: beta-galactosidase activity	5.45E-03
34	GO:0008081: phosphoric diester hydrolase activity	5.45E-03
35	GO:0004022: alcohol dehydrogenase (NAD) activity	5.45E-03
36	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.92E-03
37	GO:0004190: aspartic-type endopeptidase activity	6.41E-03
38	GO:0015079: potassium ion transmembrane transporter activity	7.95E-03
39	GO:0003735: structural constituent of ribosome	8.22E-03
40	GO:0033612: receptor serine/threonine kinase binding	8.49E-03
41	GO:0022891: substrate-specific transmembrane transporter activity	9.62E-03
42	GO:0004812: aminoacyl-tRNA ligase activity	1.08E-02
43	GO:0004518: nuclease activity	1.46E-02
44	GO:0016168: chlorophyll binding	1.88E-02
45	GO:0030247: polysaccharide binding	2.03E-02
46	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.19E-02
47	GO:0015238: drug transmembrane transporter activity	2.26E-02
48	GO:0005096: GTPase activator activity	2.26E-02
49	GO:0008233: peptidase activity	2.31E-02
50	GO:0003993: acid phosphatase activity	2.67E-02
51	GO:0004364: glutathione transferase activity	3.01E-02
52	GO:0004674: protein serine/threonine kinase activity	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	3.89E-15
3	GO:0009543: chloroplast thylakoid lumen	7.14E-10
4	GO:0009570: chloroplast stroma	4.43E-06
5	GO:0009535: chloroplast thylakoid membrane	7.72E-06
6	GO:0009344: nitrite reductase complex [NAD(P)H]	1.42E-04
7	GO:0031977: thylakoid lumen	3.82E-04
8	GO:0009579: thylakoid	9.84E-04
9	GO:0009533: chloroplast stromal thylakoid	2.21E-03
10	GO:0046658: anchored component of plasma membrane	2.71E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.31E-03
12	GO:0016324: apical plasma membrane	4.12E-03
13	GO:0009941: chloroplast envelope	4.37E-03
14	GO:0009534: chloroplast thylakoid	4.42E-03
15	GO:0032040: small-subunit processome	4.99E-03
16	GO:0030095: chloroplast photosystem II	5.92E-03
17	GO:0000312: plastid small ribosomal subunit	5.92E-03
18	GO:0009654: photosystem II oxygen evolving complex	7.95E-03
19	GO:0043231: intracellular membrane-bounded organelle	8.05E-03
20	GO:0009532: plastid stroma	8.49E-03
21	GO:0005840: ribosome	1.04E-02
22	GO:0009523: photosystem II	1.33E-02
23	GO:0019898: extrinsic component of membrane	1.33E-02
24	GO:0030529: intracellular ribonucleoprotein complex	1.81E-02
25	GO:0022625: cytosolic large ribosomal subunit	2.47E-02
26	GO:0012505: endomembrane system	4.82E-02