co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G41400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042430: indole-containing compound metabolic process	0.00E+00
2	GO:0010360: negative regulation of anion channel activity	0.00E+00
3	GO:1901017: negative regulation of potassium ion transmembrane transporter activity	0.00E+00
4	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
5	GO:0001881: receptor recycling	0.00E+00
6	GO:0006182: cGMP biosynthetic process	0.00E+00
7	GO:0032780: negative regulation of ATPase activity	0.00E+00
8	GO:0006099: tricarboxylic acid cycle	9.78E-06
9	GO:0001676: long-chain fatty acid metabolic process	2.99E-05
10	GO:0006097: glyoxylate cycle	8.49E-05
11	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.23E-04
12	GO:0043248: proteasome assembly	1.23E-04
13	GO:0006468: protein phosphorylation	2.68E-04
14	GO:0080173: male-female gamete recognition during double fertilization	2.84E-04
15	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	2.84E-04
16	GO:1901183: positive regulation of camalexin biosynthetic process	2.84E-04
17	GO:0009270: response to humidity	2.84E-04
18	GO:1902361: mitochondrial pyruvate transmembrane transport	2.84E-04
19	GO:0046244: salicylic acid catabolic process	2.84E-04
20	GO:0080093: regulation of photorespiration	2.84E-04
21	GO:0048455: stamen formation	2.84E-04
22	GO:0031998: regulation of fatty acid beta-oxidation	2.84E-04
23	GO:0051938: L-glutamate import	2.84E-04
24	GO:1990641: response to iron ion starvation	2.84E-04
25	GO:0010120: camalexin biosynthetic process	3.44E-04
26	GO:0006098: pentose-phosphate shunt	4.15E-04
27	GO:0010112: regulation of systemic acquired resistance	4.15E-04
28	GO:0046685: response to arsenic-containing substance	4.15E-04
29	GO:0009688: abscisic acid biosynthetic process	5.73E-04
30	GO:0019374: galactolipid metabolic process	6.25E-04
31	GO:0006101: citrate metabolic process	6.25E-04
32	GO:0006850: mitochondrial pyruvate transport	6.25E-04
33	GO:0015865: purine nucleotide transport	6.25E-04
34	GO:0051788: response to misfolded protein	6.25E-04
35	GO:0044419: interspecies interaction between organisms	6.25E-04
36	GO:1902000: homogentisate catabolic process	6.25E-04
37	GO:0019725: cellular homeostasis	6.25E-04
38	GO:0019441: tryptophan catabolic process to kynurenine	6.25E-04
39	GO:0097054: L-glutamate biosynthetic process	6.25E-04
40	GO:0043091: L-arginine import	6.25E-04
41	GO:0031648: protein destabilization	6.25E-04
42	GO:0015802: basic amino acid transport	6.25E-04
43	GO:0019521: D-gluconate metabolic process	6.25E-04
44	GO:0015031: protein transport	7.10E-04
45	GO:0010498: proteasomal protein catabolic process	1.01E-03
46	GO:0034051: negative regulation of plant-type hypersensitive response	1.01E-03
47	GO:0008333: endosome to lysosome transport	1.01E-03
48	GO:0045793: positive regulation of cell size	1.01E-03
49	GO:0010186: positive regulation of cellular defense response	1.01E-03
50	GO:0009072: aromatic amino acid family metabolic process	1.01E-03
51	GO:0010150: leaf senescence	1.29E-03
52	GO:0042742: defense response to bacterium	1.34E-03
53	GO:0046902: regulation of mitochondrial membrane permeability	1.45E-03
54	GO:0006537: glutamate biosynthetic process	1.45E-03
55	GO:0010255: glucose mediated signaling pathway	1.45E-03
56	GO:0045017: glycerolipid biosynthetic process	1.45E-03
57	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.45E-03
58	GO:0002239: response to oomycetes	1.45E-03
59	GO:0051707: response to other organism	1.46E-03
60	GO:0030433: ubiquitin-dependent ERAD pathway	1.75E-03
61	GO:0031348: negative regulation of defense response	1.75E-03
62	GO:0055114: oxidation-reduction process	1.92E-03
63	GO:0010363: regulation of plant-type hypersensitive response	1.94E-03
64	GO:0019676: ammonia assimilation cycle	1.94E-03
65	GO:0060548: negative regulation of cell death	1.94E-03
66	GO:0009809: lignin biosynthetic process	2.14E-03
67	GO:0051603: proteolysis involved in cellular protein catabolic process	2.23E-03
68	GO:0042147: retrograde transport, endosome to Golgi	2.24E-03
69	GO:0000304: response to singlet oxygen	2.48E-03
70	GO:0009697: salicylic acid biosynthetic process	2.48E-03
71	GO:0034052: positive regulation of plant-type hypersensitive response	2.48E-03
72	GO:0046283: anthocyanin-containing compound metabolic process	2.48E-03
73	GO:0005513: detection of calcium ion	2.48E-03
74	GO:0007029: endoplasmic reticulum organization	2.48E-03
75	GO:0009626: plant-type hypersensitive response	2.86E-03
76	GO:0006623: protein targeting to vacuole	3.01E-03
77	GO:0006796: phosphate-containing compound metabolic process	3.06E-03
78	GO:0006574: valine catabolic process	3.06E-03
79	GO:0035435: phosphate ion transmembrane transport	3.06E-03
80	GO:0006014: D-ribose metabolic process	3.06E-03
81	GO:0006561: proline biosynthetic process	3.06E-03
82	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	3.06E-03
83	GO:0010193: response to ozone	3.22E-03
84	GO:0046686: response to cadmium ion	3.55E-03
85	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.68E-03
86	GO:0009612: response to mechanical stimulus	3.68E-03
87	GO:0048280: vesicle fusion with Golgi apparatus	3.68E-03
88	GO:0009094: L-phenylalanine biosynthetic process	3.68E-03
89	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.68E-03
90	GO:0006952: defense response	3.89E-03
91	GO:0010252: auxin homeostasis	3.89E-03
92	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	4.34E-03
93	GO:0019745: pentacyclic triterpenoid biosynthetic process	4.34E-03
94	GO:1902074: response to salt	4.34E-03
95	GO:0050790: regulation of catalytic activity	4.34E-03
96	GO:0006955: immune response	4.34E-03
97	GO:0048528: post-embryonic root development	4.34E-03
98	GO:1900056: negative regulation of leaf senescence	4.34E-03
99	GO:0030091: protein repair	5.03E-03
100	GO:2000070: regulation of response to water deprivation	5.03E-03
101	GO:0006102: isocitrate metabolic process	5.03E-03
102	GO:0006644: phospholipid metabolic process	5.03E-03
103	GO:0006888: ER to Golgi vesicle-mediated transport	5.47E-03
104	GO:0009808: lignin metabolic process	5.77E-03
105	GO:0032259: methylation	5.91E-03
106	GO:0009817: defense response to fungus, incompatible interaction	6.06E-03
107	GO:0008219: cell death	6.06E-03
108	GO:0009751: response to salicylic acid	6.18E-03
109	GO:0055085: transmembrane transport	6.30E-03
110	GO:0007338: single fertilization	6.54E-03
111	GO:0009407: toxin catabolic process	6.68E-03
112	GO:0010043: response to zinc ion	7.01E-03
113	GO:0007568: aging	7.01E-03
114	GO:0006511: ubiquitin-dependent protein catabolic process	7.09E-03
115	GO:0008202: steroid metabolic process	7.35E-03
116	GO:0010162: seed dormancy process	8.19E-03
117	GO:0006896: Golgi to vacuole transport	8.19E-03
118	GO:0043069: negative regulation of programmed cell death	8.19E-03
119	GO:0009617: response to bacterium	8.41E-03
120	GO:0006839: mitochondrial transport	8.76E-03
121	GO:0015770: sucrose transport	9.06E-03
122	GO:0009807: lignan biosynthetic process	9.06E-03
123	GO:0006631: fatty acid metabolic process	9.14E-03
124	GO:0002213: defense response to insect	9.96E-03
125	GO:0006108: malate metabolic process	1.09E-02
126	GO:0009718: anthocyanin-containing compound biosynthetic process	1.09E-02
127	GO:0006855: drug transmembrane transport	1.16E-02
128	GO:0002237: response to molecule of bacterial origin	1.19E-02
129	GO:0007034: vacuolar transport	1.19E-02
130	GO:0009266: response to temperature stimulus	1.19E-02
131	GO:0070588: calcium ion transmembrane transport	1.29E-02
132	GO:0006071: glycerol metabolic process	1.39E-02
133	GO:0030150: protein import into mitochondrial matrix	1.50E-02
134	GO:0006406: mRNA export from nucleus	1.50E-02
135	GO:0005992: trehalose biosynthetic process	1.50E-02
136	GO:0003333: amino acid transmembrane transport	1.72E-02
137	GO:0009620: response to fungus	1.75E-02
138	GO:0035428: hexose transmembrane transport	1.83E-02
139	GO:0019748: secondary metabolic process	1.83E-02
140	GO:0009651: response to salt stress	1.83E-02
141	GO:0009624: response to nematode	1.91E-02
142	GO:0009737: response to abscisic acid	1.93E-02
143	GO:0006012: galactose metabolic process	1.95E-02
144	GO:0042391: regulation of membrane potential	2.31E-02
145	GO:0010118: stomatal movement	2.31E-02
146	GO:0046323: glucose import	2.44E-02
147	GO:0016310: phosphorylation	2.51E-02
148	GO:0006629: lipid metabolic process	2.52E-02
149	GO:0009408: response to heat	2.52E-02
150	GO:0042752: regulation of circadian rhythm	2.57E-02
151	GO:0019252: starch biosynthetic process	2.70E-02
152	GO:0009851: auxin biosynthetic process	2.70E-02
153	GO:0000302: response to reactive oxygen species	2.83E-02
154	GO:0002229: defense response to oomycetes	2.83E-02
155	GO:0006891: intra-Golgi vesicle-mediated transport	2.83E-02
156	GO:0008152: metabolic process	2.84E-02
157	GO:0010583: response to cyclopentenone	2.97E-02
158	GO:0009630: gravitropism	2.97E-02
159	GO:0007264: small GTPase mediated signal transduction	2.97E-02
160	GO:0030163: protein catabolic process	3.11E-02
161	GO:1901657: glycosyl compound metabolic process	3.11E-02
162	GO:0006464: cellular protein modification process	3.25E-02
163	GO:0006914: autophagy	3.25E-02
164	GO:0009567: double fertilization forming a zygote and endosperm	3.25E-02
165	GO:0009615: response to virus	3.68E-02
166	GO:0007166: cell surface receptor signaling pathway	3.78E-02
167	GO:0010029: regulation of seed germination	3.83E-02
168	GO:0009816: defense response to bacterium, incompatible interaction	3.83E-02
169	GO:0009607: response to biotic stimulus	3.83E-02
170	GO:0006974: cellular response to DNA damage stimulus	3.98E-02
171	GO:0006950: response to stress	4.13E-02
172	GO:0006979: response to oxidative stress	4.30E-02
173	GO:0048767: root hair elongation	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0015930: glutamate synthase activity	0.00E+00
2	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
3	GO:0042030: ATPase inhibitor activity	0.00E+00
4	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
5	GO:0051670: inulinase activity	0.00E+00
6	GO:0004622: lysophospholipase activity	0.00E+00
7	GO:0008794: arsenate reductase (glutaredoxin) activity	3.13E-05
8	GO:0005524: ATP binding	4.83E-05
9	GO:0010279: indole-3-acetic acid amido synthetase activity	5.37E-05
10	GO:0036402: proteasome-activating ATPase activity	1.23E-04
11	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.69E-04
12	GO:0102391: decanoate--CoA ligase activity	1.69E-04
13	GO:0004467: long-chain fatty acid-CoA ligase activity	2.21E-04
14	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.84E-04
15	GO:0051669: fructan beta-fructosidase activity	2.84E-04
16	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	2.84E-04
17	GO:0031219: levanase activity	2.84E-04
18	GO:0030611: arsenate reductase activity	2.84E-04
19	GO:0016041: glutamate synthase (ferredoxin) activity	2.84E-04
20	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	2.84E-04
21	GO:0016301: kinase activity	3.70E-04
22	GO:0004674: protein serine/threonine kinase activity	4.09E-04
23	GO:0008171: O-methyltransferase activity	5.73E-04
24	GO:0032934: sterol binding	6.25E-04
25	GO:0004061: arylformamidase activity	6.25E-04
26	GO:0019172: glyoxalase III activity	6.25E-04
27	GO:0004775: succinate-CoA ligase (ADP-forming) activity	6.25E-04
28	GO:0015036: disulfide oxidoreductase activity	6.25E-04
29	GO:0008517: folic acid transporter activity	6.25E-04
30	GO:0004776: succinate-CoA ligase (GDP-forming) activity	6.25E-04
31	GO:0003994: aconitate hydratase activity	6.25E-04
32	GO:0008559: xenobiotic-transporting ATPase activity	6.61E-04
33	GO:0050833: pyruvate transmembrane transporter activity	1.01E-03
34	GO:0004383: guanylate cyclase activity	1.01E-03
35	GO:0016805: dipeptidase activity	1.01E-03
36	GO:0005093: Rab GDP-dissociation inhibitor activity	1.01E-03
37	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.01E-03
38	GO:0017025: TBP-class protein binding	1.07E-03
39	GO:0005509: calcium ion binding	1.13E-03
40	GO:0004364: glutathione transferase activity	1.39E-03
41	GO:0015181: arginine transmembrane transporter activity	1.45E-03
42	GO:0010178: IAA-amino acid conjugate hydrolase activity	1.45E-03
43	GO:0042299: lupeol synthase activity	1.45E-03
44	GO:0015189: L-lysine transmembrane transporter activity	1.45E-03
45	GO:0008276: protein methyltransferase activity	1.45E-03
46	GO:0001653: peptide receptor activity	1.45E-03
47	GO:0005313: L-glutamate transmembrane transporter activity	1.94E-03
48	GO:0004031: aldehyde oxidase activity	1.94E-03
49	GO:0050302: indole-3-acetaldehyde oxidase activity	1.94E-03
50	GO:0016866: intramolecular transferase activity	1.94E-03
51	GO:0047769: arogenate dehydratase activity	1.94E-03
52	GO:0004664: prephenate dehydratase activity	1.94E-03
53	GO:0005496: steroid binding	2.48E-03
54	GO:0031386: protein tag	2.48E-03
55	GO:0051538: 3 iron, 4 sulfur cluster binding	2.48E-03
56	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.48E-03
57	GO:0005471: ATP:ADP antiporter activity	2.48E-03
58	GO:0015145: monosaccharide transmembrane transporter activity	2.48E-03
59	GO:0031593: polyubiquitin binding	3.06E-03
60	GO:0047714: galactolipase activity	3.06E-03
61	GO:0004556: alpha-amylase activity	3.06E-03
62	GO:0016462: pyrophosphatase activity	3.06E-03
63	GO:0016615: malate dehydrogenase activity	3.06E-03
64	GO:0004197: cysteine-type endopeptidase activity	3.43E-03
65	GO:0015035: protein disulfide oxidoreductase activity	3.47E-03
66	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.68E-03
67	GO:0004747: ribokinase activity	3.68E-03
68	GO:0004144: diacylglycerol O-acyltransferase activity	3.68E-03
69	GO:0030060: L-malate dehydrogenase activity	3.68E-03
70	GO:0003978: UDP-glucose 4-epimerase activity	3.68E-03
71	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	3.68E-03
72	GO:0004620: phospholipase activity	4.34E-03
73	GO:0004143: diacylglycerol kinase activity	4.34E-03
74	GO:0008506: sucrose:proton symporter activity	4.34E-03
75	GO:0008235: metalloexopeptidase activity	4.34E-03
76	GO:0004427: inorganic diphosphatase activity	4.34E-03
77	GO:0052747: sinapyl alcohol dehydrogenase activity	5.03E-03
78	GO:0005544: calcium-dependent phospholipid binding	5.03E-03
79	GO:0008865: fructokinase activity	5.03E-03
80	GO:0030247: polysaccharide binding	5.47E-03
81	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	5.77E-03
82	GO:0003951: NAD+ kinase activity	5.77E-03
83	GO:0008142: oxysterol binding	5.77E-03
84	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.54E-03
85	GO:0045309: protein phosphorylated amino acid binding	7.35E-03
86	GO:0015174: basic amino acid transmembrane transporter activity	7.35E-03
87	GO:0047617: acyl-CoA hydrolase activity	7.35E-03
88	GO:0030955: potassium ion binding	7.35E-03
89	GO:0004743: pyruvate kinase activity	7.35E-03
90	GO:0016491: oxidoreductase activity	7.62E-03
91	GO:0004713: protein tyrosine kinase activity	8.19E-03
92	GO:0005516: calmodulin binding	8.47E-03
93	GO:0051539: 4 iron, 4 sulfur cluster binding	8.76E-03
94	GO:0019904: protein domain specific binding	9.06E-03
95	GO:0004177: aminopeptidase activity	9.06E-03
96	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	9.10E-03
97	GO:0004672: protein kinase activity	9.42E-03
98	GO:0045551: cinnamyl-alcohol dehydrogenase activity	9.96E-03
99	GO:0015114: phosphate ion transmembrane transporter activity	1.09E-02
100	GO:0005388: calcium-transporting ATPase activity	1.09E-02
101	GO:0004022: alcohol dehydrogenase (NAD) activity	1.09E-02
102	GO:0015266: protein channel activity	1.09E-02
103	GO:0005315: inorganic phosphate transmembrane transporter activity	1.09E-02
104	GO:0008168: methyltransferase activity	1.12E-02
105	GO:0016887: ATPase activity	1.23E-02
106	GO:0030552: cAMP binding	1.29E-02
107	GO:0030553: cGMP binding	1.29E-02
108	GO:0004725: protein tyrosine phosphatase activity	1.39E-02
109	GO:0008234: cysteine-type peptidase activity	1.49E-02
110	GO:0005216: ion channel activity	1.60E-02
111	GO:0043424: protein histidine kinase binding	1.60E-02
112	GO:0004298: threonine-type endopeptidase activity	1.72E-02
113	GO:0022891: substrate-specific transmembrane transporter activity	1.95E-02
114	GO:0030551: cyclic nucleotide binding	2.31E-02
115	GO:0005249: voltage-gated potassium channel activity	2.31E-02
116	GO:0005199: structural constituent of cell wall	2.44E-02
117	GO:0003924: GTPase activity	2.52E-02
118	GO:0005355: glucose transmembrane transporter activity	2.57E-02
119	GO:0004872: receptor activity	2.70E-02
120	GO:0009055: electron carrier activity	2.75E-02
121	GO:0048038: quinone binding	2.83E-02
122	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.83E-02
123	GO:0008483: transaminase activity	3.39E-02
124	GO:0008237: metallopeptidase activity	3.39E-02
125	GO:0016597: amino acid binding	3.54E-02
126	GO:0051213: dioxygenase activity	3.68E-02
127	GO:0008194: UDP-glycosyltransferase activity	3.70E-02
128	GO:0102483: scopolin beta-glucosidase activity	4.13E-02
129	GO:0004806: triglyceride lipase activity	4.13E-02
130	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.29E-02
131	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.45E-02
132	GO:0015238: drug transmembrane transporter activity	4.60E-02
133	GO:0005096: GTPase activator activity	4.60E-02
134	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.93E-02
135	GO:0030145: manganese ion binding	4.93E-02
136	GO:0000287: magnesium ion binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005886: plasma membrane	8.20E-08
3	GO:0000502: proteasome complex	2.13E-06
4	GO:0008540: proteasome regulatory particle, base subcomplex	1.87E-05
5	GO:0031597: cytosolic proteasome complex	1.69E-04
6	GO:0005794: Golgi apparatus	2.02E-04
7	GO:0031595: nuclear proteasome complex	2.21E-04
8	GO:0031305: integral component of mitochondrial inner membrane	2.80E-04
9	GO:0045273: respiratory chain complex II	2.80E-04
10	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.80E-04
11	GO:0005777: peroxisome	3.82E-04
12	GO:0005773: vacuole	5.24E-04
13	GO:0005829: cytosol	5.66E-04
14	GO:0031314: extrinsic component of mitochondrial inner membrane	6.25E-04
15	GO:0000325: plant-type vacuole	9.50E-04
16	GO:0005764: lysosome	9.62E-04
17	GO:0030139: endocytic vesicle	1.01E-03
18	GO:0009530: primary cell wall	1.01E-03
19	GO:0046861: glyoxysomal membrane	1.01E-03
20	GO:0031902: late endosome membrane	1.32E-03
21	GO:0032585: multivesicular body membrane	1.45E-03
22	GO:0005776: autophagosome	1.94E-03
23	GO:0030140: trans-Golgi network transport vesicle	3.06E-03
24	GO:0005771: multivesicular body	3.06E-03
25	GO:0030904: retromer complex	3.06E-03
26	GO:0012507: ER to Golgi transport vesicle membrane	5.03E-03
27	GO:0016021: integral component of membrane	5.73E-03
28	GO:0009514: glyoxysome	5.77E-03
29	GO:0031901: early endosome membrane	6.54E-03
30	GO:0005774: vacuolar membrane	7.65E-03
31	GO:0008541: proteasome regulatory particle, lid subcomplex	9.06E-03
32	GO:0016602: CCAAT-binding factor complex	1.09E-02
33	GO:0005769: early endosome	1.39E-02
34	GO:0005635: nuclear envelope	1.44E-02
35	GO:0005783: endoplasmic reticulum	1.68E-02
36	GO:0005839: proteasome core complex	1.72E-02
37	GO:0031410: cytoplasmic vesicle	1.83E-02
38	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.07E-02
39	GO:0005743: mitochondrial inner membrane	2.30E-02
40	GO:0005770: late endosome	2.44E-02
41	GO:0005618: cell wall	2.58E-02
42	GO:0016020: membrane	2.87E-02
43	GO:0071944: cell periphery	3.11E-02
44	GO:0005887: integral component of plasma membrane	3.68E-02
45	GO:0005615: extracellular space	3.70E-02
46	GO:0005788: endoplasmic reticulum lumen	3.83E-02