GO Enrichment Analysis of Co-expressed Genes with
AT5G41140
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 3 | GO:0042371: vitamin K biosynthetic process | 2.76E-05 |
| 4 | GO:0071588: hydrogen peroxide mediated signaling pathway | 2.76E-05 |
| 5 | GO:2001141: regulation of RNA biosynthetic process | 1.83E-04 |
| 6 | GO:0010027: thylakoid membrane organization | 2.16E-04 |
| 7 | GO:0009247: glycolipid biosynthetic process | 3.18E-04 |
| 8 | GO:0009854: oxidative photosynthetic carbon pathway | 4.69E-04 |
| 9 | GO:0010019: chloroplast-nucleus signaling pathway | 4.69E-04 |
| 10 | GO:0009610: response to symbiotic fungus | 5.49E-04 |
| 11 | GO:0050829: defense response to Gram-negative bacterium | 5.49E-04 |
| 12 | GO:0019375: galactolipid biosynthetic process | 6.32E-04 |
| 13 | GO:0032544: plastid translation | 7.18E-04 |
| 14 | GO:0071482: cellular response to light stimulus | 7.18E-04 |
| 15 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 9.92E-04 |
| 16 | GO:0006352: DNA-templated transcription, initiation | 1.09E-03 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 1.09E-03 |
| 18 | GO:0009790: embryo development | 1.24E-03 |
| 19 | GO:0010628: positive regulation of gene expression | 1.29E-03 |
| 20 | GO:0010207: photosystem II assembly | 1.40E-03 |
| 21 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.62E-03 |
| 22 | GO:0016226: iron-sulfur cluster assembly | 2.09E-03 |
| 23 | GO:0019722: calcium-mediated signaling | 2.35E-03 |
| 24 | GO:0009561: megagametogenesis | 2.35E-03 |
| 25 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.84E-03 |
| 26 | GO:0000302: response to reactive oxygen species | 3.16E-03 |
| 27 | GO:0007267: cell-cell signaling | 3.75E-03 |
| 28 | GO:0000160: phosphorelay signal transduction system | 5.04E-03 |
| 29 | GO:0006811: ion transport | 5.21E-03 |
| 30 | GO:0009631: cold acclimation | 5.38E-03 |
| 31 | GO:0009637: response to blue light | 5.73E-03 |
| 32 | GO:0009853: photorespiration | 5.73E-03 |
| 33 | GO:0034599: cellular response to oxidative stress | 5.91E-03 |
| 34 | GO:0010114: response to red light | 6.82E-03 |
| 35 | GO:0009736: cytokinin-activated signaling pathway | 8.40E-03 |
| 36 | GO:0042545: cell wall modification | 1.05E-02 |
| 37 | GO:0042744: hydrogen peroxide catabolic process | 1.38E-02 |
| 38 | GO:0006633: fatty acid biosynthetic process | 1.48E-02 |
| 39 | GO:0007623: circadian rhythm | 1.58E-02 |
| 40 | GO:0045490: pectin catabolic process | 1.58E-02 |
| 41 | GO:0007166: cell surface receptor signaling pathway | 1.74E-02 |
| 42 | GO:0006412: translation | 1.88E-02 |
| 43 | GO:0009409: response to cold | 1.96E-02 |
| 44 | GO:0055114: oxidation-reduction process | 2.08E-02 |
| 45 | GO:0009658: chloroplast organization | 2.16E-02 |
| 46 | GO:0042254: ribosome biogenesis | 2.19E-02 |
| 47 | GO:0015979: photosynthesis | 2.76E-02 |
| 48 | GO:0008152: metabolic process | 3.56E-02 |
| 49 | GO:0006508: proteolysis | 4.43E-02 |
| 50 | GO:0009735: response to cytokinin | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 2 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 3 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 4 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 5 | GO:0004328: formamidase activity | 2.76E-05 |
| 6 | GO:0042389: omega-3 fatty acid desaturase activity | 7.01E-05 |
| 7 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 7.01E-05 |
| 8 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.23E-04 |
| 9 | GO:0035250: UDP-galactosyltransferase activity | 1.83E-04 |
| 10 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.83E-04 |
| 11 | GO:0001053: plastid sigma factor activity | 2.48E-04 |
| 12 | GO:0016987: sigma factor activity | 2.48E-04 |
| 13 | GO:0004222: metalloendopeptidase activity | 3.14E-04 |
| 14 | GO:0016688: L-ascorbate peroxidase activity | 3.92E-04 |
| 15 | GO:0004130: cytochrome-c peroxidase activity | 3.92E-04 |
| 16 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 7.18E-04 |
| 17 | GO:0019843: rRNA binding | 1.07E-03 |
| 18 | GO:0031072: heat shock protein binding | 1.29E-03 |
| 19 | GO:0051536: iron-sulfur cluster binding | 1.73E-03 |
| 20 | GO:0043531: ADP binding | 2.43E-03 |
| 21 | GO:0048038: quinone binding | 3.16E-03 |
| 22 | GO:0000156: phosphorelay response regulator activity | 3.45E-03 |
| 23 | GO:0003735: structural constituent of ribosome | 5.54E-03 |
| 24 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.40E-03 |
| 25 | GO:0045330: aspartyl esterase activity | 9.01E-03 |
| 26 | GO:0046872: metal ion binding | 9.39E-03 |
| 27 | GO:0030599: pectinesterase activity | 1.03E-02 |
| 28 | GO:0051082: unfolded protein binding | 1.07E-02 |
| 29 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.51E-02 |
| 30 | GO:0046910: pectinesterase inhibitor activity | 1.51E-02 |
| 31 | GO:0003824: catalytic activity | 1.59E-02 |
| 32 | GO:0008194: UDP-glycosyltransferase activity | 1.71E-02 |
| 33 | GO:0003743: translation initiation factor activity | 1.77E-02 |
| 34 | GO:0016491: oxidoreductase activity | 1.91E-02 |
| 35 | GO:0004672: protein kinase activity | 2.13E-02 |
| 36 | GO:0020037: heme binding | 2.29E-02 |
| 37 | GO:0004871: signal transducer activity | 2.95E-02 |
| 38 | GO:0009055: electron carrier activity | 3.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000408: EKC/KEOPS complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 8.71E-11 |
| 3 | GO:0009941: chloroplast envelope | 1.70E-06 |
| 4 | GO:0009570: chloroplast stroma | 5.72E-06 |
| 5 | GO:0009706: chloroplast inner membrane | 5.15E-05 |
| 6 | GO:0042170: plastid membrane | 7.01E-05 |
| 7 | GO:0009534: chloroplast thylakoid | 1.52E-04 |
| 8 | GO:0042646: plastid nucleoid | 1.83E-04 |
| 9 | GO:0009295: nucleoid | 1.91E-04 |
| 10 | GO:0009535: chloroplast thylakoid membrane | 2.07E-04 |
| 11 | GO:0016363: nuclear matrix | 4.69E-04 |
| 12 | GO:0046930: pore complex | 7.18E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 8.07E-04 |
| 14 | GO:0000312: plastid small ribosomal subunit | 1.40E-03 |
| 15 | GO:0009536: plastid | 3.01E-03 |
| 16 | GO:0071944: cell periphery | 3.45E-03 |
| 17 | GO:0015934: large ribosomal subunit | 5.38E-03 |
| 18 | GO:0009543: chloroplast thylakoid lumen | 1.26E-02 |
| 19 | GO:0005840: ribosome | 1.52E-02 |
| 20 | GO:0009506: plasmodesma | 1.78E-02 |
| 21 | GO:0009505: plant-type cell wall | 1.81E-02 |
| 22 | GO:0022627: cytosolic small ribosomal subunit | 1.93E-02 |
| 23 | GO:0005743: mitochondrial inner membrane | 3.15E-02 |