Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G41050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0015805: S-adenosyl-L-methionine transport0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0010206: photosystem II repair2.18E-06
9GO:0015995: chlorophyll biosynthetic process3.57E-06
10GO:0009773: photosynthetic electron transport in photosystem I6.71E-06
11GO:0010275: NAD(P)H dehydrogenase complex assembly1.51E-05
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.06E-04
13GO:0043266: regulation of potassium ion transport5.89E-04
14GO:0071370: cellular response to gibberellin stimulus5.89E-04
15GO:0010480: microsporocyte differentiation5.89E-04
16GO:0031338: regulation of vesicle fusion5.89E-04
17GO:0006824: cobalt ion transport5.89E-04
18GO:0000481: maturation of 5S rRNA5.89E-04
19GO:0071461: cellular response to redox state5.89E-04
20GO:2000021: regulation of ion homeostasis5.89E-04
21GO:0010028: xanthophyll cycle5.89E-04
22GO:0034337: RNA folding5.89E-04
23GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.89E-04
24GO:0060627: regulation of vesicle-mediated transport5.89E-04
25GO:0000476: maturation of 4.5S rRNA5.89E-04
26GO:0000967: rRNA 5'-end processing5.89E-04
27GO:0006810: transport8.18E-04
28GO:0032544: plastid translation9.92E-04
29GO:0071482: cellular response to light stimulus9.92E-04
30GO:0008152: metabolic process1.13E-03
31GO:0045717: negative regulation of fatty acid biosynthetic process1.27E-03
32GO:0010541: acropetal auxin transport1.27E-03
33GO:0034755: iron ion transmembrane transport1.27E-03
34GO:0016122: xanthophyll metabolic process1.27E-03
35GO:0010270: photosystem II oxygen evolving complex assembly1.27E-03
36GO:0034470: ncRNA processing1.27E-03
37GO:0080005: photosystem stoichiometry adjustment1.27E-03
38GO:1900871: chloroplast mRNA modification1.27E-03
39GO:0071554: cell wall organization or biogenesis1.39E-03
40GO:0015979: photosynthesis1.87E-03
41GO:0043617: cellular response to sucrose starvation2.09E-03
42GO:0010160: formation of animal organ boundary2.09E-03
43GO:0045493: xylan catabolic process2.09E-03
44GO:0090630: activation of GTPase activity2.09E-03
45GO:2001295: malonyl-CoA biosynthetic process2.09E-03
46GO:0006518: peptide metabolic process2.09E-03
47GO:0009767: photosynthetic electron transport chain2.47E-03
48GO:0010411: xyloglucan metabolic process2.74E-03
49GO:0043572: plastid fission3.03E-03
50GO:2001141: regulation of RNA biosynthetic process3.03E-03
51GO:0046836: glycolipid transport3.03E-03
52GO:0051639: actin filament network formation3.03E-03
53GO:0009152: purine ribonucleotide biosynthetic process3.03E-03
54GO:0046653: tetrahydrofolate metabolic process3.03E-03
55GO:0034059: response to anoxia3.03E-03
56GO:0009226: nucleotide-sugar biosynthetic process3.03E-03
57GO:0080170: hydrogen peroxide transmembrane transport3.03E-03
58GO:0043481: anthocyanin accumulation in tissues in response to UV light3.03E-03
59GO:0006424: glutamyl-tRNA aminoacylation3.03E-03
60GO:0051016: barbed-end actin filament capping3.03E-03
61GO:1901332: negative regulation of lateral root development3.03E-03
62GO:0009817: defense response to fungus, incompatible interaction3.13E-03
63GO:0009658: chloroplast organization3.60E-03
64GO:0010037: response to carbon dioxide4.08E-03
65GO:0015976: carbon utilization4.08E-03
66GO:0051781: positive regulation of cell division4.08E-03
67GO:0051764: actin crosslink formation4.08E-03
68GO:0019464: glycine decarboxylation via glycine cleavage system4.08E-03
69GO:0045727: positive regulation of translation4.08E-03
70GO:2000122: negative regulation of stomatal complex development4.08E-03
71GO:0015994: chlorophyll metabolic process4.08E-03
72GO:0006546: glycine catabolic process4.08E-03
73GO:0032543: mitochondrial translation5.24E-03
74GO:0016120: carotene biosynthetic process5.24E-03
75GO:0007094: mitotic spindle assembly checkpoint5.24E-03
76GO:1902183: regulation of shoot apical meristem development5.24E-03
77GO:0016123: xanthophyll biosynthetic process5.24E-03
78GO:0010158: abaxial cell fate specification5.24E-03
79GO:0000304: response to singlet oxygen5.24E-03
80GO:0006633: fatty acid biosynthetic process5.95E-03
81GO:0018258: protein O-linked glycosylation via hydroxyproline6.50E-03
82GO:0000741: karyogamy6.50E-03
83GO:0010405: arabinogalactan protein metabolic process6.50E-03
84GO:0010304: PSII associated light-harvesting complex II catabolic process6.50E-03
85GO:0006751: glutathione catabolic process6.50E-03
86GO:0042549: photosystem II stabilization6.50E-03
87GO:0006655: phosphatidylglycerol biosynthetic process6.50E-03
88GO:0060918: auxin transport6.50E-03
89GO:0010190: cytochrome b6f complex assembly6.50E-03
90GO:0006828: manganese ion transport6.50E-03
91GO:0006508: proteolysis7.03E-03
92GO:0000413: protein peptidyl-prolyl isomerization7.20E-03
93GO:0048280: vesicle fusion with Golgi apparatus7.86E-03
94GO:0051693: actin filament capping9.30E-03
95GO:0048437: floral organ development9.30E-03
96GO:0010196: nonphotochemical quenching9.30E-03
97GO:0009704: de-etiolation1.08E-02
98GO:0032508: DNA duplex unwinding1.08E-02
99GO:0048564: photosystem I assembly1.08E-02
100GO:0010439: regulation of glucosinolate biosynthetic process1.08E-02
101GO:0071281: cellular response to iron ion1.10E-02
102GO:0009657: plastid organization1.25E-02
103GO:0006526: arginine biosynthetic process1.25E-02
104GO:0009932: cell tip growth1.25E-02
105GO:0015996: chlorophyll catabolic process1.25E-02
106GO:0042254: ribosome biogenesis1.37E-02
107GO:0010027: thylakoid membrane organization1.40E-02
108GO:0000373: Group II intron splicing1.42E-02
109GO:0000902: cell morphogenesis1.42E-02
110GO:0009051: pentose-phosphate shunt, oxidative branch1.42E-02
111GO:0090305: nucleic acid phosphodiester bond hydrolysis1.42E-02
112GO:0006098: pentose-phosphate shunt1.42E-02
113GO:2000024: regulation of leaf development1.42E-02
114GO:0005975: carbohydrate metabolic process1.47E-02
115GO:0042128: nitrate assimilation1.56E-02
116GO:0009638: phototropism1.60E-02
117GO:0006779: porphyrin-containing compound biosynthetic process1.60E-02
118GO:1900865: chloroplast RNA modification1.60E-02
119GO:0007346: regulation of mitotic cell cycle1.60E-02
120GO:0043069: negative regulation of programmed cell death1.78E-02
121GO:0006896: Golgi to vacuole transport1.78E-02
122GO:0006782: protoporphyrinogen IX biosynthetic process1.78E-02
123GO:0008285: negative regulation of cell proliferation1.98E-02
124GO:1903507: negative regulation of nucleic acid-templated transcription1.98E-02
125GO:0006352: DNA-templated transcription, initiation1.98E-02
126GO:0006415: translational termination1.98E-02
127GO:0018119: peptidyl-cysteine S-nitrosylation1.98E-02
128GO:0048229: gametophyte development1.98E-02
129GO:0009684: indoleacetic acid biosynthetic process1.98E-02
130GO:0019684: photosynthesis, light reaction1.98E-02
131GO:0006816: calcium ion transport1.98E-02
132GO:0009407: toxin catabolic process2.02E-02
133GO:0016024: CDP-diacylglycerol biosynthetic process2.18E-02
134GO:0008361: regulation of cell size2.18E-02
135GO:0006820: anion transport2.18E-02
136GO:0006006: glucose metabolic process2.38E-02
137GO:0030036: actin cytoskeleton organization2.38E-02
138GO:0009718: anthocyanin-containing compound biosynthetic process2.38E-02
139GO:0010075: regulation of meristem growth2.38E-02
140GO:0006094: gluconeogenesis2.38E-02
141GO:0009735: response to cytokinin2.39E-02
142GO:0007015: actin filament organization2.60E-02
143GO:0010540: basipetal auxin transport2.60E-02
144GO:0009934: regulation of meristem structural organization2.60E-02
145GO:0048768: root hair cell tip growth2.60E-02
146GO:0010207: photosystem II assembly2.60E-02
147GO:0010020: chloroplast fission2.60E-02
148GO:0006631: fatty acid metabolic process2.76E-02
149GO:0009416: response to light stimulus2.78E-02
150GO:0005985: sucrose metabolic process2.82E-02
151GO:0071732: cellular response to nitric oxide2.82E-02
152GO:0010030: positive regulation of seed germination2.82E-02
153GO:0010053: root epidermal cell differentiation2.82E-02
154GO:0006833: water transport3.05E-02
155GO:0042546: cell wall biogenesis3.12E-02
156GO:0051017: actin filament bundle assembly3.28E-02
157GO:0007010: cytoskeleton organization3.28E-02
158GO:0009944: polarity specification of adaxial/abaxial axis3.28E-02
159GO:0000027: ribosomal large subunit assembly3.28E-02
160GO:0006629: lipid metabolic process3.29E-02
161GO:0009636: response to toxic substance3.37E-02
162GO:0007017: microtubule-based process3.52E-02
163GO:0016575: histone deacetylation3.52E-02
164GO:0042538: hyperosmotic salinity response3.76E-02
165GO:0061077: chaperone-mediated protein folding3.76E-02
166GO:0031408: oxylipin biosynthetic process3.76E-02
167GO:0035428: hexose transmembrane transport4.01E-02
168GO:2000022: regulation of jasmonic acid mediated signaling pathway4.01E-02
169GO:0006364: rRNA processing4.03E-02
170GO:0051603: proteolysis involved in cellular protein catabolic process4.17E-02
171GO:0071369: cellular response to ethylene stimulus4.27E-02
172GO:0006012: galactose metabolic process4.27E-02
173GO:0006857: oligopeptide transport4.32E-02
174GO:0009306: protein secretion4.53E-02
175GO:0048443: stamen development4.53E-02
176GO:0016117: carotenoid biosynthetic process4.80E-02
177GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.80E-02
178GO:0042147: retrograde transport, endosome to Golgi4.80E-02
179GO:0048316: seed development4.91E-02
RankGO TermAdjusted P value
1GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
2GO:0042903: tubulin deacetylase activity0.00E+00
3GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
4GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
7GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
8GO:0043864: indoleacetamide hydrolase activity0.00E+00
9GO:0046422: violaxanthin de-epoxidase activity0.00E+00
10GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
11GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
12GO:0043014: alpha-tubulin binding0.00E+00
13GO:0051721: protein phosphatase 2A binding0.00E+00
14GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.12E-05
16GO:0005528: FK506 binding3.22E-05
17GO:0016851: magnesium chelatase activity1.06E-04
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.81E-04
19GO:0008200: ion channel inhibitor activity3.86E-04
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.13E-04
21GO:0004017: adenylate kinase activity5.13E-04
22GO:0005096: GTPase activator activity5.57E-04
23GO:0034256: chlorophyll(ide) b reductase activity5.89E-04
24GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.89E-04
25GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity5.89E-04
26GO:0008252: nucleotidase activity5.89E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.89E-04
28GO:0004856: xylulokinase activity5.89E-04
29GO:0080132: fatty acid alpha-hydroxylase activity5.89E-04
30GO:0003867: 4-aminobutyrate transaminase activity5.89E-04
31GO:0019843: rRNA binding9.42E-04
32GO:0015929: hexosaminidase activity1.27E-03
33GO:0004563: beta-N-acetylhexosaminidase activity1.27E-03
34GO:0016868: intramolecular transferase activity, phosphotransferases1.27E-03
35GO:0003839: gamma-glutamylcyclotransferase activity1.27E-03
36GO:0005094: Rho GDP-dissociation inhibitor activity1.27E-03
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.27E-03
38GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.27E-03
39GO:0016413: O-acetyltransferase activity2.07E-03
40GO:0004148: dihydrolipoyl dehydrogenase activity2.09E-03
41GO:0004075: biotin carboxylase activity2.09E-03
42GO:0030267: glyoxylate reductase (NADP) activity2.09E-03
43GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.09E-03
44GO:0008864: formyltetrahydrofolate deformylase activity2.09E-03
45GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor2.09E-03
46GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity2.09E-03
47GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity2.09E-03
48GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity2.09E-03
49GO:0015095: magnesium ion transmembrane transporter activity2.47E-03
50GO:0008236: serine-type peptidase activity2.93E-03
51GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.03E-03
52GO:0043023: ribosomal large subunit binding3.03E-03
53GO:0001872: (1->3)-beta-D-glucan binding3.03E-03
54GO:0017089: glycolipid transporter activity3.03E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity3.03E-03
56GO:0019201: nucleotide kinase activity3.03E-03
57GO:0048487: beta-tubulin binding3.03E-03
58GO:0016149: translation release factor activity, codon specific3.03E-03
59GO:0004222: metalloendopeptidase activity3.55E-03
60GO:0046556: alpha-L-arabinofuranosidase activity4.08E-03
61GO:0001053: plastid sigma factor activity4.08E-03
62GO:0004345: glucose-6-phosphate dehydrogenase activity4.08E-03
63GO:0016836: hydro-lyase activity4.08E-03
64GO:0051861: glycolipid binding4.08E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity4.08E-03
66GO:0016987: sigma factor activity4.08E-03
67GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.08E-03
68GO:0009044: xylan 1,4-beta-xylosidase activity4.08E-03
69GO:0052793: pectin acetylesterase activity4.08E-03
70GO:0005509: calcium ion binding4.61E-03
71GO:0004176: ATP-dependent peptidase activity4.71E-03
72GO:0004252: serine-type endopeptidase activity4.92E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor5.24E-03
74GO:0017137: Rab GTPase binding5.24E-03
75GO:0004040: amidase activity5.24E-03
76GO:0003989: acetyl-CoA carboxylase activity5.24E-03
77GO:0008381: mechanically-gated ion channel activity5.24E-03
78GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.87E-03
79GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.50E-03
80GO:0042578: phosphoric ester hydrolase activity6.50E-03
81GO:1990714: hydroxyproline O-galactosyltransferase activity6.50E-03
82GO:0004332: fructose-bisphosphate aldolase activity6.50E-03
83GO:0004130: cytochrome-c peroxidase activity6.50E-03
84GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.86E-03
85GO:0051920: peroxiredoxin activity7.86E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.86E-03
87GO:0043295: glutathione binding9.30E-03
88GO:0016762: xyloglucan:xyloglucosyl transferase activity9.61E-03
89GO:0048038: quinone binding9.61E-03
90GO:0043022: ribosome binding1.08E-02
91GO:0004033: aldo-keto reductase (NADP) activity1.08E-02
92GO:0004869: cysteine-type endopeptidase inhibitor activity1.08E-02
93GO:0004564: beta-fructofuranosidase activity1.08E-02
94GO:0016209: antioxidant activity1.08E-02
95GO:0004034: aldose 1-epimerase activity1.08E-02
96GO:0051015: actin filament binding1.10E-02
97GO:0008237: metallopeptidase activity1.24E-02
98GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.25E-02
99GO:0016788: hydrolase activity, acting on ester bonds1.37E-02
100GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.42E-02
101GO:0003747: translation release factor activity1.42E-02
102GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.42E-02
103GO:0005384: manganese ion transmembrane transporter activity1.60E-02
104GO:0047617: acyl-CoA hydrolase activity1.60E-02
105GO:0004575: sucrose alpha-glucosidase activity1.60E-02
106GO:0005381: iron ion transmembrane transporter activity1.60E-02
107GO:0016798: hydrolase activity, acting on glycosyl bonds1.65E-02
108GO:0047372: acylglycerol lipase activity1.98E-02
109GO:0052689: carboxylic ester hydrolase activity2.14E-02
110GO:0008378: galactosyltransferase activity2.18E-02
111GO:0010329: auxin efflux transmembrane transporter activity2.38E-02
112GO:0004089: carbonate dehydratase activity2.38E-02
113GO:0031072: heat shock protein binding2.38E-02
114GO:0004565: beta-galactosidase activity2.38E-02
115GO:0008081: phosphoric diester hydrolase activity2.38E-02
116GO:0004022: alcohol dehydrogenase (NAD) activity2.38E-02
117GO:0003993: acid phosphatase activity2.43E-02
118GO:0008266: poly(U) RNA binding2.60E-02
119GO:0016491: oxidoreductase activity2.60E-02
120GO:0004364: glutathione transferase activity2.88E-02
121GO:0004185: serine-type carboxypeptidase activity3.00E-02
122GO:0016787: hydrolase activity3.17E-02
123GO:0051537: 2 iron, 2 sulfur cluster binding3.24E-02
124GO:0003714: transcription corepressor activity3.28E-02
125GO:0004407: histone deacetylase activity3.28E-02
126GO:0015293: symporter activity3.37E-02
127GO:0043424: protein histidine kinase binding3.52E-02
128GO:0033612: receptor serine/threonine kinase binding3.76E-02
129GO:0022891: substrate-specific transmembrane transporter activity4.27E-02
130GO:0030570: pectate lyase activity4.27E-02
131GO:0003777: microtubule motor activity4.46E-02
132GO:0003756: protein disulfide isomerase activity4.53E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009507: chloroplast4.55E-46
4GO:0009534: chloroplast thylakoid6.46E-25
5GO:0009535: chloroplast thylakoid membrane4.11E-24
6GO:0009570: chloroplast stroma8.24E-23
7GO:0009543: chloroplast thylakoid lumen6.74E-21
8GO:0031977: thylakoid lumen1.30E-13
9GO:0009579: thylakoid2.44E-12
10GO:0009941: chloroplast envelope2.27E-11
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.55E-10
12GO:0030095: chloroplast photosystem II9.55E-09
13GO:0009654: photosystem II oxygen evolving complex4.39E-08
14GO:0019898: extrinsic component of membrane5.28E-07
15GO:0010007: magnesium chelatase complex5.01E-05
16GO:0031969: chloroplast membrane8.01E-05
17GO:0009505: plant-type cell wall5.07E-04
18GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex5.89E-04
19GO:0009533: chloroplast stromal thylakoid6.56E-04
20GO:0008290: F-actin capping protein complex1.27E-03
21GO:0005884: actin filament1.89E-03
22GO:0005618: cell wall3.03E-03
23GO:0009531: secondary cell wall3.03E-03
24GO:0005775: vacuolar lumen3.03E-03
25GO:0005960: glycine cleavage complex3.03E-03
26GO:0032432: actin filament bundle3.03E-03
27GO:0010287: plastoglobule3.86E-03
28GO:0005828: kinetochore microtubule4.08E-03
29GO:0042651: thylakoid membrane4.28E-03
30GO:0048046: apoplast5.15E-03
31GO:0000776: kinetochore5.24E-03
32GO:0000777: condensed chromosome kinetochore7.86E-03
33GO:0010369: chromocenter7.86E-03
34GO:0009536: plastid8.98E-03
35GO:0012507: ER to Golgi transport vesicle membrane1.08E-02
36GO:0045298: tubulin complex1.42E-02
37GO:0005876: spindle microtubule1.60E-02
38GO:0005874: microtubule1.75E-02
39GO:0000311: plastid large ribosomal subunit2.18E-02
40GO:0032040: small-subunit processome2.18E-02
41GO:0031902: late endosome membrane2.76E-02
42GO:0043234: protein complex3.05E-02
43GO:0005886: plasma membrane3.10E-02
44GO:0046658: anchored component of plasma membrane3.83E-02
45GO:0005840: ribosome4.01E-02
46GO:0016020: membrane4.02E-02
47GO:0016021: integral component of membrane4.53E-02
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Gene type



Gene DE type