co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G40990

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0042430: indole-containing compound metabolic process	0.00E+00
3	GO:0080053: response to phenylalanine	0.00E+00
4	GO:0080052: response to histidine	0.00E+00
5	GO:0006793: phosphorus metabolic process	0.00E+00
6	GO:0006182: cGMP biosynthetic process	0.00E+00
7	GO:0072722: response to amitrole	0.00E+00
8	GO:0042742: defense response to bacterium	9.56E-14
9	GO:0009617: response to bacterium	1.13E-10
10	GO:0009751: response to salicylic acid	1.59E-06
11	GO:0010150: leaf senescence	9.00E-06
12	GO:0009626: plant-type hypersensitive response	2.19E-05
13	GO:0002237: response to molecule of bacterial origin	3.08E-05
14	GO:0034976: response to endoplasmic reticulum stress	4.44E-05
15	GO:0009697: salicylic acid biosynthetic process	5.28E-05
16	GO:0006874: cellular calcium ion homeostasis	6.13E-05
17	GO:0046686: response to cadmium ion	1.02E-04
18	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.08E-04
19	GO:0006979: response to oxidative stress	1.28E-04
20	GO:1900056: negative regulation of leaf senescence	1.42E-04
21	GO:0030091: protein repair	1.82E-04
22	GO:0000302: response to reactive oxygen species	2.02E-04
23	GO:0010193: response to ozone	2.02E-04
24	GO:0051938: L-glutamate import	2.13E-04
25	GO:0006047: UDP-N-acetylglucosamine metabolic process	2.13E-04
26	GO:0015760: glucose-6-phosphate transport	2.13E-04
27	GO:1990641: response to iron ion starvation	2.13E-04
28	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.13E-04
29	GO:0046244: salicylic acid catabolic process	2.13E-04
30	GO:0050691: regulation of defense response to virus by host	2.13E-04
31	GO:0019276: UDP-N-acetylgalactosamine metabolic process	2.13E-04
32	GO:0034975: protein folding in endoplasmic reticulum	2.13E-04
33	GO:0009699: phenylpropanoid biosynthetic process	2.25E-04
34	GO:0010112: regulation of systemic acquired resistance	2.74E-04
35	GO:0009627: systemic acquired resistance	3.85E-04
36	GO:0006468: protein phosphorylation	4.42E-04
37	GO:0015802: basic amino acid transport	4.76E-04
38	GO:0009805: coumarin biosynthetic process	4.76E-04
39	GO:0006452: translational frameshifting	4.76E-04
40	GO:0044419: interspecies interaction between organisms	4.76E-04
41	GO:0006101: citrate metabolic process	4.76E-04
42	GO:0015865: purine nucleotide transport	4.76E-04
43	GO:0015712: hexose phosphate transport	4.76E-04
44	GO:0030003: cellular cation homeostasis	4.76E-04
45	GO:0042939: tripeptide transport	4.76E-04
46	GO:0045905: positive regulation of translational termination	4.76E-04
47	GO:0043091: L-arginine import	4.76E-04
48	GO:0051592: response to calcium ion	4.76E-04
49	GO:0045901: positive regulation of translational elongation	4.76E-04
50	GO:0055114: oxidation-reduction process	7.26E-04
51	GO:0006011: UDP-glucose metabolic process	7.74E-04
52	GO:0010272: response to silver ion	7.74E-04
53	GO:0015714: phosphoenolpyruvate transport	7.74E-04
54	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.74E-04
55	GO:0035436: triose phosphate transmembrane transport	7.74E-04
56	GO:0010351: lithium ion transport	7.74E-04
57	GO:0051707: response to other organism	8.74E-04
58	GO:0009863: salicylic acid mediated signaling pathway	8.90E-04
59	GO:0003333: amino acid transmembrane transport	1.07E-03
60	GO:0016998: cell wall macromolecule catabolic process	1.07E-03
61	GO:0002239: response to oomycetes	1.10E-03
62	GO:0046902: regulation of mitochondrial membrane permeability	1.10E-03
63	GO:0006882: cellular zinc ion homeostasis	1.10E-03
64	GO:0046836: glycolipid transport	1.10E-03
65	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.10E-03
66	GO:0031347: regulation of defense response	1.11E-03
67	GO:0031348: negative regulation of defense response	1.17E-03
68	GO:0071456: cellular response to hypoxia	1.17E-03
69	GO:0019748: secondary metabolic process	1.17E-03
70	GO:0010109: regulation of photosynthesis	1.47E-03
71	GO:0071219: cellular response to molecule of bacterial origin	1.47E-03
72	GO:0015713: phosphoglycerate transport	1.47E-03
73	GO:0080142: regulation of salicylic acid biosynthetic process	1.47E-03
74	GO:0042938: dipeptide transport	1.47E-03
75	GO:0034052: positive regulation of plant-type hypersensitive response	1.87E-03
76	GO:0000304: response to singlet oxygen	1.87E-03
77	GO:0006097: glyoxylate cycle	1.87E-03
78	GO:0010200: response to chitin	1.94E-03
79	GO:0009624: response to nematode	1.97E-03
80	GO:0002229: defense response to oomycetes	2.13E-03
81	GO:0010256: endomembrane system organization	2.31E-03
82	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.31E-03
83	GO:0009643: photosynthetic acclimation	2.31E-03
84	GO:0006561: proline biosynthetic process	2.31E-03
85	GO:0010405: arabinogalactan protein metabolic process	2.31E-03
86	GO:0030163: protein catabolic process	2.43E-03
87	GO:0042372: phylloquinone biosynthetic process	2.77E-03
88	GO:0009615: response to virus	3.07E-03
89	GO:0019745: pentacyclic triterpenoid biosynthetic process	3.26E-03
90	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	3.26E-03
91	GO:0030026: cellular manganese ion homeostasis	3.26E-03
92	GO:1900057: positive regulation of leaf senescence	3.26E-03
93	GO:1902074: response to salt	3.26E-03
94	GO:0006102: isocitrate metabolic process	3.78E-03
95	GO:0009817: defense response to fungus, incompatible interaction	4.00E-03
96	GO:0008219: cell death	4.00E-03
97	GO:0010120: camalexin biosynthetic process	4.33E-03
98	GO:0010204: defense response signaling pathway, resistance gene-independent	4.33E-03
99	GO:0046685: response to arsenic-containing substance	4.90E-03
100	GO:0009060: aerobic respiration	4.90E-03
101	GO:0045087: innate immune response	5.07E-03
102	GO:0006099: tricarboxylic acid cycle	5.30E-03
103	GO:0043067: regulation of programmed cell death	5.50E-03
104	GO:0030042: actin filament depolymerization	5.50E-03
105	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.50E-03
106	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.50E-03
107	GO:1900426: positive regulation of defense response to bacterium	5.50E-03
108	GO:0055062: phosphate ion homeostasis	6.12E-03
109	GO:0007064: mitotic sister chromatid cohesion	6.12E-03
110	GO:0009870: defense response signaling pathway, resistance gene-dependent	6.12E-03
111	GO:0006032: chitin catabolic process	6.12E-03
112	GO:0009688: abscisic acid biosynthetic process	6.12E-03
113	GO:0042542: response to hydrogen peroxide	6.27E-03
114	GO:0006816: calcium ion transport	6.77E-03
115	GO:0009682: induced systemic resistance	6.77E-03
116	GO:0009089: lysine biosynthetic process via diaminopimelate	6.77E-03
117	GO:0009807: lignan biosynthetic process	6.77E-03
118	GO:0000272: polysaccharide catabolic process	6.77E-03
119	GO:0016485: protein processing	6.77E-03
120	GO:0006790: sulfur compound metabolic process	7.44E-03
121	GO:0002213: defense response to insect	7.44E-03
122	GO:0015706: nitrate transport	7.44E-03
123	GO:0009718: anthocyanin-containing compound biosynthetic process	8.13E-03
124	GO:0010075: regulation of meristem growth	8.13E-03
125	GO:0042538: hyperosmotic salinity response	8.20E-03
126	GO:0006952: defense response	8.55E-03
127	GO:0006486: protein glycosylation	8.80E-03
128	GO:0009934: regulation of meristem structural organization	8.84E-03
129	GO:0010167: response to nitrate	9.58E-03
130	GO:0046688: response to copper ion	9.58E-03
131	GO:0046854: phosphatidylinositol phosphorylation	9.58E-03
132	GO:0030150: protein import into mitochondrial matrix	1.11E-02
133	GO:0005992: trehalose biosynthetic process	1.11E-02
134	GO:0045454: cell redox homeostasis	1.14E-02
135	GO:0009620: response to fungus	1.15E-02
136	GO:0006457: protein folding	1.18E-02
137	GO:0009695: jasmonic acid biosynthetic process	1.19E-02
138	GO:0006825: copper ion transport	1.19E-02
139	GO:0009553: embryo sac development	1.22E-02
140	GO:0031408: oxylipin biosynthetic process	1.27E-02
141	GO:0032259: methylation	1.40E-02
142	GO:0009411: response to UV	1.45E-02
143	GO:0010089: xylem development	1.53E-02
144	GO:0010584: pollen exine formation	1.53E-02
145	GO:0009306: protein secretion	1.53E-02
146	GO:0010118: stomatal movement	1.72E-02
147	GO:0048868: pollen tube development	1.81E-02
148	GO:0006814: sodium ion transport	1.91E-02
149	GO:0042752: regulation of circadian rhythm	1.91E-02
150	GO:0009749: response to glucose	2.00E-02
151	GO:0009851: auxin biosynthetic process	2.00E-02
152	GO:0009567: double fertilization forming a zygote and endosperm	2.41E-02
153	GO:0010252: auxin homeostasis	2.41E-02
154	GO:0006464: cellular protein modification process	2.41E-02
155	GO:0007166: cell surface receptor signaling pathway	2.49E-02
156	GO:0009816: defense response to bacterium, incompatible interaction	2.84E-02
157	GO:0042128: nitrate assimilation	2.95E-02
158	GO:0016311: dephosphorylation	3.18E-02
159	GO:0009407: toxin catabolic process	3.54E-02
160	GO:0006970: response to osmotic stress	3.63E-02
161	GO:0048527: lateral root development	3.66E-02
162	GO:0010043: response to zinc ion	3.66E-02
163	GO:0007568: aging	3.66E-02
164	GO:0006865: amino acid transport	3.78E-02
165	GO:0080167: response to karrikin	4.17E-02
166	GO:0006839: mitochondrial transport	4.29E-02
167	GO:0050832: defense response to fungus	4.34E-02
168	GO:0046777: protein autophosphorylation	4.45E-02
169	GO:0006511: ubiquitin-dependent protein catabolic process	4.45E-02
170	GO:0044550: secondary metabolite biosynthetic process	4.53E-02
171	GO:0009744: response to sucrose	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0016312: inositol bisphosphate phosphatase activity	0.00E+00
3	GO:0016301: kinase activity	1.32E-05
4	GO:0004674: protein serine/threonine kinase activity	2.08E-05
5	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.00E-05
6	GO:0003756: protein disulfide isomerase activity	1.06E-04
7	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.08E-04
8	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	2.13E-04
9	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.13E-04
10	GO:0048037: cofactor binding	2.13E-04
11	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	2.13E-04
12	GO:0004321: fatty-acyl-CoA synthase activity	2.13E-04
13	GO:0008909: isochorismate synthase activity	2.13E-04
14	GO:0010285: L,L-diaminopimelate aminotransferase activity	2.13E-04
15	GO:0050660: flavin adenine dinucleotide binding	3.18E-04
16	GO:0003994: aconitate hydratase activity	4.76E-04
17	GO:0015152: glucose-6-phosphate transmembrane transporter activity	4.76E-04
18	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.76E-04
19	GO:0042937: tripeptide transporter activity	4.76E-04
20	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.76E-04
21	GO:0005217: intracellular ligand-gated ion channel activity	7.24E-04
22	GO:0004970: ionotropic glutamate receptor activity	7.24E-04
23	GO:0000030: mannosyltransferase activity	7.74E-04
24	GO:0016531: copper chaperone activity	7.74E-04
25	GO:0019003: GDP binding	7.74E-04
26	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	7.74E-04
27	GO:0004383: guanylate cyclase activity	7.74E-04
28	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	7.74E-04
29	GO:0071917: triose-phosphate transmembrane transporter activity	7.74E-04
30	GO:0009055: electron carrier activity	8.25E-04
31	GO:0004298: threonine-type endopeptidase activity	1.07E-03
32	GO:0015189: L-lysine transmembrane transporter activity	1.10E-03
33	GO:0017089: glycolipid transporter activity	1.10E-03
34	GO:0015181: arginine transmembrane transporter activity	1.10E-03
35	GO:0042299: lupeol synthase activity	1.10E-03
36	GO:0042936: dipeptide transporter activity	1.47E-03
37	GO:0051861: glycolipid binding	1.47E-03
38	GO:0015369: calcium:proton antiporter activity	1.47E-03
39	GO:0005313: L-glutamate transmembrane transporter activity	1.47E-03
40	GO:0004031: aldehyde oxidase activity	1.47E-03
41	GO:0050302: indole-3-acetaldehyde oxidase activity	1.47E-03
42	GO:0016866: intramolecular transferase activity	1.47E-03
43	GO:0010279: indole-3-acetic acid amido synthetase activity	1.47E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	1.47E-03
45	GO:0015368: calcium:cation antiporter activity	1.47E-03
46	GO:0005509: calcium ion binding	1.65E-03
47	GO:0005471: ATP:ADP antiporter activity	1.87E-03
48	GO:0030976: thiamine pyrophosphate binding	2.31E-03
49	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.31E-03
50	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.31E-03
51	GO:0051920: peroxiredoxin activity	2.77E-03
52	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.77E-03
53	GO:0005261: cation channel activity	2.77E-03
54	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	2.77E-03
55	GO:0051213: dioxygenase activity	3.07E-03
56	GO:0030247: polysaccharide binding	3.61E-03
57	GO:0016209: antioxidant activity	3.78E-03
58	GO:0043022: ribosome binding	3.78E-03
59	GO:0015491: cation:cation antiporter activity	3.78E-03
60	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.81E-03
61	GO:0016207: 4-coumarate-CoA ligase activity	4.90E-03
62	GO:0005524: ATP binding	5.05E-03
63	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.07E-03
64	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.50E-03
65	GO:0004743: pyruvate kinase activity	5.50E-03
66	GO:0015174: basic amino acid transmembrane transporter activity	5.50E-03
67	GO:0045309: protein phosphorylated amino acid binding	5.50E-03
68	GO:0030955: potassium ion binding	5.50E-03
69	GO:0015112: nitrate transmembrane transporter activity	5.50E-03
70	GO:0008171: O-methyltransferase activity	6.12E-03
71	GO:0004568: chitinase activity	6.12E-03
72	GO:0004129: cytochrome-c oxidase activity	6.77E-03
73	GO:0019904: protein domain specific binding	6.77E-03
74	GO:0008559: xenobiotic-transporting ATPase activity	6.77E-03
75	GO:0043565: sequence-specific DNA binding	7.07E-03
76	GO:0008378: galactosyltransferase activity	7.44E-03
77	GO:0005262: calcium channel activity	8.13E-03
78	GO:0015266: protein channel activity	8.13E-03
79	GO:0004022: alcohol dehydrogenase (NAD) activity	8.13E-03
80	GO:0005315: inorganic phosphate transmembrane transporter activity	8.13E-03
81	GO:0008233: peptidase activity	8.84E-03
82	GO:0008061: chitin binding	9.58E-03
83	GO:0015171: amino acid transmembrane transporter activity	9.75E-03
84	GO:0015035: protein disulfide oxidoreductase activity	1.29E-02
85	GO:0016779: nucleotidyltransferase activity	1.36E-02
86	GO:0005507: copper ion binding	1.36E-02
87	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.53E-02
88	GO:0016758: transferase activity, transferring hexosyl groups	1.53E-02
89	GO:0016853: isomerase activity	1.91E-02
90	GO:0015297: antiporter activity	2.08E-02
91	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.31E-02
92	GO:0008483: transaminase activity	2.52E-02
93	GO:0008237: metallopeptidase activity	2.52E-02
94	GO:0016887: ATPase activity	2.58E-02
95	GO:0042802: identical protein binding	2.77E-02
96	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.95E-02
97	GO:0004683: calmodulin-dependent protein kinase activity	3.07E-02
98	GO:0008168: methyltransferase activity	3.24E-02
99	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.30E-02
100	GO:0015238: drug transmembrane transporter activity	3.42E-02
101	GO:0004222: metalloendopeptidase activity	3.54E-02
102	GO:0030145: manganese ion binding	3.66E-02
103	GO:0050897: cobalt ion binding	3.66E-02
104	GO:0003746: translation elongation factor activity	3.91E-02
105	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.03E-02
106	GO:0004672: protein kinase activity	4.04E-02
107	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.16E-02
108	GO:0004497: monooxygenase activity	4.17E-02
109	GO:0050661: NADP binding	4.29E-02
110	GO:0051539: 4 iron, 4 sulfur cluster binding	4.29E-02
111	GO:0004364: glutathione transferase activity	4.55E-02
112	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0005886: plasma membrane	4.90E-06
3	GO:0005783: endoplasmic reticulum	2.59E-05
4	GO:0019773: proteasome core complex, alpha-subunit complex	2.25E-04
5	GO:0016021: integral component of membrane	6.87E-04
6	GO:0005758: mitochondrial intermembrane space	8.90E-04
7	GO:0005839: proteasome core complex	1.07E-03
8	GO:0005741: mitochondrial outer membrane	1.07E-03
9	GO:0005829: cytosol	1.14E-03
10	GO:0000502: proteasome complex	1.26E-03
11	GO:0009898: cytoplasmic side of plasma membrane	1.47E-03
12	GO:0005746: mitochondrial respiratory chain	1.87E-03
13	GO:0005774: vacuolar membrane	2.82E-03
14	GO:0005788: endoplasmic reticulum lumen	3.25E-03
15	GO:0031305: integral component of mitochondrial inner membrane	3.78E-03
16	GO:0000326: protein storage vacuole	4.33E-03
17	GO:0000325: plant-type vacuole	4.62E-03
18	GO:0005740: mitochondrial envelope	6.12E-03
19	GO:0008541: proteasome regulatory particle, lid subcomplex	6.77E-03
20	GO:0005750: mitochondrial respiratory chain complex III	8.84E-03
21	GO:0015629: actin cytoskeleton	1.45E-02
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.53E-02
23	GO:0005759: mitochondrial matrix	1.98E-02
24	GO:0009705: plant-type vacuole membrane	2.18E-02
25	GO:0048046: apoplast	2.38E-02
26	GO:0016020: membrane	4.01E-02
27	GO:0005819: spindle	4.16E-02
28	GO:0031969: chloroplast membrane	4.17E-02
29	GO:0005576: extracellular region	4.65E-02