GO Enrichment Analysis of Co-expressed Genes with
AT5G40950
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006223: uracil salvage | 0.00E+00 |
| 2 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 3 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 6 | GO:0015995: chlorophyll biosynthetic process | 7.00E-13 |
| 7 | GO:0015979: photosynthesis | 6.32E-11 |
| 8 | GO:0009735: response to cytokinin | 4.31E-08 |
| 9 | GO:0009658: chloroplast organization | 2.07E-07 |
| 10 | GO:0090391: granum assembly | 3.08E-06 |
| 11 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.63E-06 |
| 12 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.24E-06 |
| 13 | GO:0042742: defense response to bacterium | 1.21E-05 |
| 14 | GO:0032544: plastid translation | 1.04E-04 |
| 15 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.27E-04 |
| 16 | GO:1904964: positive regulation of phytol biosynthetic process | 1.27E-04 |
| 17 | GO:0006783: heme biosynthetic process | 1.28E-04 |
| 18 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.54E-04 |
| 19 | GO:2000071: regulation of defense response by callose deposition | 2.94E-04 |
| 20 | GO:0080183: response to photooxidative stress | 2.94E-04 |
| 21 | GO:0006729: tetrahydrobiopterin biosynthetic process | 2.94E-04 |
| 22 | GO:0006568: tryptophan metabolic process | 2.94E-04 |
| 23 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.94E-04 |
| 24 | GO:0019253: reductive pentose-phosphate cycle | 3.20E-04 |
| 25 | GO:0015714: phosphoenolpyruvate transport | 4.86E-04 |
| 26 | GO:0071492: cellular response to UV-A | 4.86E-04 |
| 27 | GO:0006760: folic acid-containing compound metabolic process | 4.86E-04 |
| 28 | GO:0006165: nucleoside diphosphate phosphorylation | 6.95E-04 |
| 29 | GO:0006228: UTP biosynthetic process | 6.95E-04 |
| 30 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 6.95E-04 |
| 31 | GO:0006986: response to unfolded protein | 6.95E-04 |
| 32 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 6.95E-04 |
| 33 | GO:0015729: oxaloacetate transport | 6.95E-04 |
| 34 | GO:0006241: CTP biosynthetic process | 6.95E-04 |
| 35 | GO:0015713: phosphoglycerate transport | 9.21E-04 |
| 36 | GO:0044206: UMP salvage | 9.21E-04 |
| 37 | GO:0046656: folic acid biosynthetic process | 9.21E-04 |
| 38 | GO:0006021: inositol biosynthetic process | 9.21E-04 |
| 39 | GO:0019676: ammonia assimilation cycle | 9.21E-04 |
| 40 | GO:0015743: malate transport | 9.21E-04 |
| 41 | GO:0071486: cellular response to high light intensity | 9.21E-04 |
| 42 | GO:0006183: GTP biosynthetic process | 9.21E-04 |
| 43 | GO:0032502: developmental process | 1.13E-03 |
| 44 | GO:0071423: malate transmembrane transport | 1.16E-03 |
| 45 | GO:0043097: pyrimidine nucleoside salvage | 1.16E-03 |
| 46 | GO:0032543: mitochondrial translation | 1.16E-03 |
| 47 | GO:0031365: N-terminal protein amino acid modification | 1.16E-03 |
| 48 | GO:0009790: embryo development | 1.28E-03 |
| 49 | GO:0006412: translation | 1.29E-03 |
| 50 | GO:0006206: pyrimidine nucleobase metabolic process | 1.43E-03 |
| 51 | GO:0046855: inositol phosphate dephosphorylation | 1.43E-03 |
| 52 | GO:0006796: phosphate-containing compound metabolic process | 1.43E-03 |
| 53 | GO:0010190: cytochrome b6f complex assembly | 1.43E-03 |
| 54 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.43E-03 |
| 55 | GO:0010027: thylakoid membrane organization | 1.51E-03 |
| 56 | GO:0009627: systemic acquired resistance | 1.69E-03 |
| 57 | GO:0042026: protein refolding | 1.71E-03 |
| 58 | GO:1901259: chloroplast rRNA processing | 1.71E-03 |
| 59 | GO:0017148: negative regulation of translation | 1.71E-03 |
| 60 | GO:0046654: tetrahydrofolate biosynthetic process | 1.71E-03 |
| 61 | GO:0009772: photosynthetic electron transport in photosystem II | 2.01E-03 |
| 62 | GO:0010196: nonphotochemical quenching | 2.01E-03 |
| 63 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.32E-03 |
| 64 | GO:0042255: ribosome assembly | 2.32E-03 |
| 65 | GO:0006353: DNA-templated transcription, termination | 2.32E-03 |
| 66 | GO:0048564: photosystem I assembly | 2.32E-03 |
| 67 | GO:0009657: plastid organization | 2.65E-03 |
| 68 | GO:0009245: lipid A biosynthetic process | 3.00E-03 |
| 69 | GO:0031425: chloroplast RNA processing | 3.36E-03 |
| 70 | GO:0080167: response to karrikin | 3.61E-03 |
| 71 | GO:0019538: protein metabolic process | 3.73E-03 |
| 72 | GO:0045036: protein targeting to chloroplast | 3.73E-03 |
| 73 | GO:0006457: protein folding | 3.93E-03 |
| 74 | GO:0009682: induced systemic resistance | 4.12E-03 |
| 75 | GO:0043085: positive regulation of catalytic activity | 4.12E-03 |
| 76 | GO:0009773: photosynthetic electron transport in photosystem I | 4.12E-03 |
| 77 | GO:0006790: sulfur compound metabolic process | 4.52E-03 |
| 78 | GO:0006006: glucose metabolic process | 4.93E-03 |
| 79 | GO:0006096: glycolytic process | 5.06E-03 |
| 80 | GO:0010020: chloroplast fission | 5.36E-03 |
| 81 | GO:0019853: L-ascorbic acid biosynthetic process | 5.80E-03 |
| 82 | GO:0046854: phosphatidylinositol phosphorylation | 5.80E-03 |
| 83 | GO:0009116: nucleoside metabolic process | 6.71E-03 |
| 84 | GO:0061077: chaperone-mediated protein folding | 7.68E-03 |
| 85 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 8.18E-03 |
| 86 | GO:0007005: mitochondrion organization | 8.18E-03 |
| 87 | GO:0009411: response to UV | 8.69E-03 |
| 88 | GO:0006633: fatty acid biosynthetic process | 9.58E-03 |
| 89 | GO:0006413: translational initiation | 9.81E-03 |
| 90 | GO:0042335: cuticle development | 1.03E-02 |
| 91 | GO:0010118: stomatal movement | 1.03E-02 |
| 92 | GO:0006662: glycerol ether metabolic process | 1.09E-02 |
| 93 | GO:0009741: response to brassinosteroid | 1.09E-02 |
| 94 | GO:0015986: ATP synthesis coupled proton transport | 1.14E-02 |
| 95 | GO:0006814: sodium ion transport | 1.14E-02 |
| 96 | GO:0009409: response to cold | 1.22E-02 |
| 97 | GO:0002229: defense response to oomycetes | 1.26E-02 |
| 98 | GO:0010583: response to cyclopentenone | 1.32E-02 |
| 99 | GO:1901657: glycosyl compound metabolic process | 1.38E-02 |
| 100 | GO:0010286: heat acclimation | 1.50E-02 |
| 101 | GO:0055085: transmembrane transport | 1.66E-02 |
| 102 | GO:0042254: ribosome biogenesis | 1.66E-02 |
| 103 | GO:0018298: protein-chromophore linkage | 1.97E-02 |
| 104 | GO:0008219: cell death | 1.97E-02 |
| 105 | GO:0006499: N-terminal protein myristoylation | 2.11E-02 |
| 106 | GO:0009867: jasmonic acid mediated signaling pathway | 2.33E-02 |
| 107 | GO:0034599: cellular response to oxidative stress | 2.41E-02 |
| 108 | GO:0045454: cell redox homeostasis | 2.43E-02 |
| 109 | GO:0030001: metal ion transport | 2.56E-02 |
| 110 | GO:0042542: response to hydrogen peroxide | 2.72E-02 |
| 111 | GO:0009644: response to high light intensity | 2.96E-02 |
| 112 | GO:0031347: regulation of defense response | 3.20E-02 |
| 113 | GO:0006812: cation transport | 3.29E-02 |
| 114 | GO:0042538: hyperosmotic salinity response | 3.29E-02 |
| 115 | GO:0009585: red, far-red light phototransduction | 3.46E-02 |
| 116 | GO:0009620: response to fungus | 4.16E-02 |
| 117 | GO:0009624: response to nematode | 4.44E-02 |
| 118 | GO:0051726: regulation of cell cycle | 4.63E-02 |
| 119 | GO:0009742: brassinosteroid mediated signaling pathway | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 2 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 5 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0016851: magnesium chelatase activity | 7.24E-06 |
| 7 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.27E-04 |
| 8 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.27E-04 |
| 9 | GO:0019843: rRNA binding | 1.27E-04 |
| 10 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.27E-04 |
| 11 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.27E-04 |
| 12 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.27E-04 |
| 13 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.27E-04 |
| 14 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.27E-04 |
| 15 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 1.27E-04 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.94E-04 |
| 17 | GO:0015367: oxoglutarate:malate antiporter activity | 2.94E-04 |
| 18 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 2.94E-04 |
| 19 | GO:0016630: protochlorophyllide reductase activity | 2.94E-04 |
| 20 | GO:0004150: dihydroneopterin aldolase activity | 2.94E-04 |
| 21 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 2.94E-04 |
| 22 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.94E-04 |
| 23 | GO:0004312: fatty acid synthase activity | 2.94E-04 |
| 24 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.94E-04 |
| 25 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.94E-04 |
| 26 | GO:0003735: structural constituent of ribosome | 4.82E-04 |
| 27 | GO:0004751: ribose-5-phosphate isomerase activity | 4.86E-04 |
| 28 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 4.86E-04 |
| 29 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 4.86E-04 |
| 30 | GO:0051087: chaperone binding | 4.91E-04 |
| 31 | GO:0022891: substrate-specific transmembrane transporter activity | 6.40E-04 |
| 32 | GO:0015131: oxaloacetate transmembrane transporter activity | 6.95E-04 |
| 33 | GO:0004550: nucleoside diphosphate kinase activity | 6.95E-04 |
| 34 | GO:0043023: ribosomal large subunit binding | 6.95E-04 |
| 35 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 6.95E-04 |
| 36 | GO:0051082: unfolded protein binding | 8.05E-04 |
| 37 | GO:0043495: protein anchor | 9.21E-04 |
| 38 | GO:0015120: phosphoglycerate transmembrane transporter activity | 9.21E-04 |
| 39 | GO:0004845: uracil phosphoribosyltransferase activity | 9.21E-04 |
| 40 | GO:0004040: amidase activity | 1.16E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 1.16E-03 |
| 42 | GO:0031177: phosphopantetheine binding | 1.43E-03 |
| 43 | GO:0016462: pyrophosphatase activity | 1.43E-03 |
| 44 | GO:0016168: chlorophyll binding | 1.60E-03 |
| 45 | GO:0004849: uridine kinase activity | 1.71E-03 |
| 46 | GO:0000035: acyl binding | 1.71E-03 |
| 47 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.71E-03 |
| 48 | GO:0015140: malate transmembrane transporter activity | 2.01E-03 |
| 49 | GO:0019899: enzyme binding | 2.01E-03 |
| 50 | GO:0008235: metalloexopeptidase activity | 2.01E-03 |
| 51 | GO:0004427: inorganic diphosphatase activity | 2.01E-03 |
| 52 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.32E-03 |
| 53 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.71E-03 |
| 54 | GO:0008047: enzyme activator activity | 3.73E-03 |
| 55 | GO:0004177: aminopeptidase activity | 4.12E-03 |
| 56 | GO:0044183: protein binding involved in protein folding | 4.12E-03 |
| 57 | GO:0004650: polygalacturonase activity | 5.56E-03 |
| 58 | GO:0015035: protein disulfide oxidoreductase activity | 6.27E-03 |
| 59 | GO:0005528: FK506 binding | 6.71E-03 |
| 60 | GO:0043424: protein histidine kinase binding | 7.19E-03 |
| 61 | GO:0004176: ATP-dependent peptidase activity | 7.68E-03 |
| 62 | GO:0003727: single-stranded RNA binding | 9.21E-03 |
| 63 | GO:0047134: protein-disulfide reductase activity | 9.75E-03 |
| 64 | GO:0015297: antiporter activity | 1.00E-02 |
| 65 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.09E-02 |
| 66 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.09E-02 |
| 67 | GO:0004791: thioredoxin-disulfide reductase activity | 1.14E-02 |
| 68 | GO:0003743: translation initiation factor activity | 1.23E-02 |
| 69 | GO:0042802: identical protein binding | 1.34E-02 |
| 70 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.38E-02 |
| 71 | GO:0008237: metallopeptidase activity | 1.50E-02 |
| 72 | GO:0008483: transaminase activity | 1.50E-02 |
| 73 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.50E-02 |
| 74 | GO:0102483: scopolin beta-glucosidase activity | 1.83E-02 |
| 75 | GO:0005507: copper ion binding | 1.92E-02 |
| 76 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.97E-02 |
| 77 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.11E-02 |
| 78 | GO:0003746: translation elongation factor activity | 2.33E-02 |
| 79 | GO:0008422: beta-glucosidase activity | 2.48E-02 |
| 80 | GO:0042803: protein homodimerization activity | 2.55E-02 |
| 81 | GO:0050661: NADP binding | 2.56E-02 |
| 82 | GO:0005509: calcium ion binding | 2.70E-02 |
| 83 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.96E-02 |
| 84 | GO:0051287: NAD binding | 3.20E-02 |
| 85 | GO:0003690: double-stranded DNA binding | 3.54E-02 |
| 86 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.98E-02 |
| 87 | GO:0016887: ATPase activity | 4.62E-02 |
| 88 | GO:0003729: mRNA binding | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 7.40E-56 |
| 2 | GO:0009570: chloroplast stroma | 4.63E-37 |
| 3 | GO:0009941: chloroplast envelope | 2.18E-25 |
| 4 | GO:0009579: thylakoid | 8.02E-23 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.16E-21 |
| 6 | GO:0009534: chloroplast thylakoid | 9.44E-09 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.35E-08 |
| 8 | GO:0009654: photosystem II oxygen evolving complex | 3.41E-07 |
| 9 | GO:0031977: thylakoid lumen | 7.31E-07 |
| 10 | GO:0009536: plastid | 2.42E-05 |
| 11 | GO:0019898: extrinsic component of membrane | 6.43E-05 |
| 12 | GO:0005840: ribosome | 9.95E-05 |
| 13 | GO:0009515: granal stacked thylakoid | 1.27E-04 |
| 14 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.27E-04 |
| 15 | GO:0009508: plastid chromosome | 2.83E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 4.86E-04 |
| 17 | GO:0031969: chloroplast membrane | 6.22E-04 |
| 18 | GO:0009523: photosystem II | 9.96E-04 |
| 19 | GO:0009295: nucleoid | 1.35E-03 |
| 20 | GO:0010319: stromule | 1.35E-03 |
| 21 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.43E-03 |
| 22 | GO:0048046: apoplast | 1.81E-03 |
| 23 | GO:0015934: large ribosomal subunit | 2.27E-03 |
| 24 | GO:0009539: photosystem II reaction center | 2.65E-03 |
| 25 | GO:0000311: plastid large ribosomal subunit | 4.52E-03 |
| 26 | GO:0000312: plastid small ribosomal subunit | 5.36E-03 |
| 27 | GO:0030095: chloroplast photosystem II | 5.36E-03 |
| 28 | GO:0009706: chloroplast inner membrane | 6.09E-03 |
| 29 | GO:0042651: thylakoid membrane | 7.19E-03 |
| 30 | GO:0015935: small ribosomal subunit | 7.68E-03 |
| 31 | GO:0009532: plastid stroma | 7.68E-03 |
| 32 | GO:0005759: mitochondrial matrix | 9.58E-03 |
| 33 | GO:0016592: mediator complex | 1.32E-02 |
| 34 | GO:0030529: intracellular ribonucleoprotein complex | 1.63E-02 |
| 35 | GO:0009707: chloroplast outer membrane | 1.97E-02 |