co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G40500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0019323: pentose catabolic process	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0015979: photosynthesis	3.26E-12
8	GO:0009773: photosynthetic electron transport in photosystem I	1.05E-09
9	GO:0010207: photosystem II assembly	2.47E-07
10	GO:0015995: chlorophyll biosynthetic process	1.75E-06
11	GO:0010411: xyloglucan metabolic process	2.94E-05
12	GO:0010206: photosystem II repair	5.43E-05
13	GO:0042254: ribosome biogenesis	1.27E-04
14	GO:0019464: glycine decarboxylation via glycine cleavage system	1.40E-04
15	GO:0006546: glycine catabolic process	1.40E-04
16	GO:0044262: cellular carbohydrate metabolic process	5.03E-04
17	GO:0043266: regulation of potassium ion transport	5.03E-04
18	GO:2000021: regulation of ion homeostasis	5.03E-04
19	GO:1902458: positive regulation of stomatal opening	5.03E-04
20	GO:0071588: hydrogen peroxide mediated signaling pathway	5.03E-04
21	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	5.03E-04
22	GO:0060627: regulation of vesicle-mediated transport	5.03E-04
23	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.03E-04
24	GO:0006824: cobalt ion transport	5.03E-04
25	GO:0009645: response to low light intensity stimulus	5.20E-04
26	GO:0010196: nonphotochemical quenching	5.20E-04
27	GO:0000413: protein peptidyl-prolyl isomerization	7.17E-04
28	GO:0042546: cell wall biogenesis	8.12E-04
29	GO:0010541: acropetal auxin transport	1.08E-03
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.08E-03
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.08E-03
32	GO:0034755: iron ion transmembrane transport	1.08E-03
33	GO:0071555: cell wall organization	1.09E-03
34	GO:0006810: transport	1.09E-03
35	GO:0010027: thylakoid membrane organization	1.64E-03
36	GO:0016024: CDP-diacylglycerol biosynthetic process	1.71E-03
37	GO:0006518: peptide metabolic process	1.77E-03
38	GO:0045493: xylan catabolic process	1.77E-03
39	GO:2001295: malonyl-CoA biosynthetic process	1.77E-03
40	GO:0010160: formation of animal organ boundary	1.77E-03
41	GO:0090391: granum assembly	1.77E-03
42	GO:0016042: lipid catabolic process	1.83E-03
43	GO:0010143: cutin biosynthetic process	2.20E-03
44	GO:0018298: protein-chromophore linkage	2.30E-03
45	GO:1901332: negative regulation of lateral root development	2.57E-03
46	GO:0050482: arachidonic acid secretion	2.57E-03
47	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.57E-03
48	GO:0051513: regulation of monopolar cell growth	2.57E-03
49	GO:0007231: osmosensory signaling pathway	2.57E-03
50	GO:0071484: cellular response to light intensity	2.57E-03
51	GO:0051639: actin filament network formation	2.57E-03
52	GO:0034059: response to anoxia	2.57E-03
53	GO:0043481: anthocyanin accumulation in tissues in response to UV light	2.57E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.57E-03
55	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.57E-03
56	GO:0009650: UV protection	2.57E-03
57	GO:0010306: rhamnogalacturonan II biosynthetic process	2.57E-03
58	GO:0006833: water transport	2.75E-03
59	GO:0034599: cellular response to oxidative stress	3.30E-03
60	GO:0006412: translation	3.32E-03
61	GO:0009768: photosynthesis, light harvesting in photosystem I	3.37E-03
62	GO:0010037: response to carbon dioxide	3.46E-03
63	GO:0015976: carbon utilization	3.46E-03
64	GO:0051764: actin crosslink formation	3.46E-03
65	GO:0009765: photosynthesis, light harvesting	3.46E-03
66	GO:0006183: GTP biosynthetic process	3.46E-03
67	GO:0015994: chlorophyll metabolic process	3.46E-03
68	GO:2000122: negative regulation of stomatal complex development	3.46E-03
69	GO:0033500: carbohydrate homeostasis	3.46E-03
70	GO:0045038: protein import into chloroplast thylakoid membrane	4.44E-03
71	GO:0031365: N-terminal protein amino acid modification	4.44E-03
72	GO:0016123: xanthophyll biosynthetic process	4.44E-03
73	GO:0034052: positive regulation of plant-type hypersensitive response	4.44E-03
74	GO:0016120: carotene biosynthetic process	4.44E-03
75	GO:0045454: cell redox homeostasis	4.72E-03
76	GO:0010405: arabinogalactan protein metabolic process	5.50E-03
77	GO:0006655: phosphatidylglycerol biosynthetic process	5.50E-03
78	GO:0060918: auxin transport	5.50E-03
79	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.50E-03
80	GO:0010190: cytochrome b6f complex assembly	5.50E-03
81	GO:0006869: lipid transport	5.56E-03
82	GO:0034220: ion transmembrane transport	5.65E-03
83	GO:0042335: cuticle development	5.65E-03
84	GO:0010019: chloroplast-nucleus signaling pathway	6.63E-03
85	GO:0010555: response to mannitol	6.63E-03
86	GO:0071470: cellular response to osmotic stress	6.63E-03
87	GO:0009612: response to mechanical stimulus	6.63E-03
88	GO:0000302: response to reactive oxygen species	7.54E-03
89	GO:0071554: cell wall organization or biogenesis	7.54E-03
90	GO:0006400: tRNA modification	7.85E-03
91	GO:0043068: positive regulation of programmed cell death	9.14E-03
92	GO:0009704: de-etiolation	9.14E-03
93	GO:2000070: regulation of response to water deprivation	9.14E-03
94	GO:0006644: phospholipid metabolic process	9.14E-03
95	GO:0048564: photosystem I assembly	9.14E-03
96	GO:0009819: drought recovery	9.14E-03
97	GO:0009642: response to light intensity	9.14E-03
98	GO:0009624: response to nematode	9.94E-03
99	GO:0015996: chlorophyll catabolic process	1.05E-02
100	GO:0007186: G-protein coupled receptor signaling pathway	1.05E-02
101	GO:0006783: heme biosynthetic process	1.19E-02
102	GO:0000373: Group II intron splicing	1.19E-02
103	GO:0009051: pentose-phosphate shunt, oxidative branch	1.19E-02
104	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.19E-02
105	GO:0042128: nitrate assimilation	1.22E-02
106	GO:0009638: phototropism	1.34E-02
107	GO:0006779: porphyrin-containing compound biosynthetic process	1.34E-02
108	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.50E-02
109	GO:0006782: protoporphyrinogen IX biosynthetic process	1.50E-02
110	GO:0010218: response to far red light	1.58E-02
111	GO:0009735: response to cytokinin	1.58E-02
112	GO:0009684: indoleacetic acid biosynthetic process	1.66E-02
113	GO:0010015: root morphogenesis	1.66E-02
114	GO:0006816: calcium ion transport	1.66E-02
115	GO:0019684: photosynthesis, light reaction	1.66E-02
116	GO:0009637: response to blue light	1.82E-02
117	GO:0008361: regulation of cell size	1.83E-02
118	GO:0045037: protein import into chloroplast stroma	1.83E-02
119	GO:0010628: positive regulation of gene expression	2.01E-02
120	GO:0006006: glucose metabolic process	2.01E-02
121	GO:0050826: response to freezing	2.01E-02
122	GO:0009767: photosynthetic electron transport chain	2.01E-02
123	GO:0030001: metal ion transport	2.08E-02
124	GO:0005975: carbohydrate metabolic process	2.11E-02
125	GO:0010540: basipetal auxin transport	2.18E-02
126	GO:0010030: positive regulation of seed germination	2.37E-02
127	GO:0070588: calcium ion transmembrane transport	2.37E-02
128	GO:0010167: response to nitrate	2.37E-02
129	GO:0009644: response to high light intensity	2.55E-02
130	GO:0008152: metabolic process	2.66E-02
131	GO:0051017: actin filament bundle assembly	2.76E-02
132	GO:0005992: trehalose biosynthetic process	2.76E-02
133	GO:0019344: cysteine biosynthetic process	2.76E-02
134	GO:0000027: ribosomal large subunit assembly	2.76E-02
135	GO:0055085: transmembrane transport	2.76E-02
136	GO:0009664: plant-type cell wall organization	2.95E-02
137	GO:0042538: hyperosmotic salinity response	2.95E-02
138	GO:0007017: microtubule-based process	2.96E-02
139	GO:0016998: cell wall macromolecule catabolic process	3.16E-02
140	GO:0048511: rhythmic process	3.16E-02
141	GO:0009814: defense response, incompatible interaction	3.38E-02
142	GO:0006417: regulation of translation	3.51E-02
143	GO:0009411: response to UV	3.59E-02
144	GO:0006012: galactose metabolic process	3.59E-02
145	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.59E-02
146	GO:0009306: protein secretion	3.81E-02
147	GO:0048443: stamen development	3.81E-02
148	GO:0016117: carotenoid biosynthetic process	4.04E-02
149	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.04E-02
150	GO:0042631: cellular response to water deprivation	4.27E-02
151	GO:0080167: response to karrikin	4.49E-02
152	GO:0010182: sugar mediated signaling pathway	4.50E-02
153	GO:0048868: pollen tube development	4.50E-02
154	GO:0009958: positive gravitropism	4.50E-02
155	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.68E-02
156	GO:0042752: regulation of circadian rhythm	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
2	GO:0050421: nitrite reductase (NO-forming) activity	0.00E+00
3	GO:0019146: arabinose-5-phosphate isomerase activity	0.00E+00
4	GO:0047889: ferredoxin-nitrate reductase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0048307: ferredoxin-nitrite reductase activity	0.00E+00
12	GO:0016851: magnesium chelatase activity	5.96E-07
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.15E-06
14	GO:0051920: peroxiredoxin activity	1.22E-05
15	GO:0019843: rRNA binding	1.31E-05
16	GO:0005528: FK506 binding	2.00E-05
17	GO:0016209: antioxidant activity	2.84E-05
18	GO:0004375: glycine dehydrogenase (decarboxylating) activity	8.09E-05
19	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.19E-04
20	GO:0005509: calcium ion binding	2.86E-04
21	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.99E-04
22	GO:0004130: cytochrome-c peroxidase activity	3.03E-04
23	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.03E-04
24	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.03E-04
25	GO:0003735: structural constituent of ribosome	9.77E-04
26	GO:0008967: phosphoglycolate phosphatase activity	1.08E-03
27	GO:0008883: glutamyl-tRNA reductase activity	1.08E-03
28	GO:0047746: chlorophyllase activity	1.08E-03
29	GO:0003938: IMP dehydrogenase activity	1.08E-03
30	GO:0004047: aminomethyltransferase activity	1.08E-03
31	GO:0004750: ribulose-phosphate 3-epimerase activity	1.08E-03
32	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.08E-03
33	GO:0052689: carboxylic ester hydrolase activity	1.09E-03
34	GO:0016168: chlorophyll binding	1.76E-03
35	GO:0004075: biotin carboxylase activity	1.77E-03
36	GO:0030267: glyoxylate reductase (NADP) activity	1.77E-03
37	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.77E-03
38	GO:0050734: hydroxycinnamoyltransferase activity	1.77E-03
39	GO:0016788: hydrolase activity, acting on ester bonds	2.43E-03
40	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.57E-03
41	GO:0001872: (1->3)-beta-D-glucan binding	2.57E-03
42	GO:0031409: pigment binding	2.75E-03
43	GO:0046556: alpha-L-arabinofuranosidase activity	3.46E-03
44	GO:0004659: prenyltransferase activity	3.46E-03
45	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.46E-03
46	GO:0016836: hydro-lyase activity	3.46E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.46E-03
48	GO:0004045: aminoacyl-tRNA hydrolase activity	3.46E-03
49	GO:1990137: plant seed peroxidase activity	3.46E-03
50	GO:0052793: pectin acetylesterase activity	3.46E-03
51	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.46E-03
52	GO:0009044: xylan 1,4-beta-xylosidase activity	3.46E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.47E-03
54	GO:0008289: lipid binding	3.73E-03
55	GO:0030570: pectate lyase activity	4.43E-03
56	GO:0004623: phospholipase A2 activity	4.44E-03
57	GO:0003989: acetyl-CoA carboxylase activity	4.44E-03
58	GO:0004040: amidase activity	4.44E-03
59	GO:0051537: 2 iron, 2 sulfur cluster binding	4.78E-03
60	GO:0016688: L-ascorbate peroxidase activity	5.50E-03
61	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	5.50E-03
62	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.50E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.63E-03
64	GO:0051753: mannan synthase activity	6.63E-03
65	GO:0004017: adenylate kinase activity	6.63E-03
66	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.63E-03
67	GO:0008235: metalloexopeptidase activity	7.85E-03
68	GO:0004034: aldose 1-epimerase activity	9.14E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	9.14E-03
70	GO:0004601: peroxidase activity	9.26E-03
71	GO:0016413: O-acetyltransferase activity	1.03E-02
72	GO:0015250: water channel activity	1.10E-02
73	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.19E-02
74	GO:0005381: iron ion transmembrane transporter activity	1.34E-02
75	GO:0004805: trehalose-phosphatase activity	1.50E-02
76	GO:0005096: GTPase activator activity	1.51E-02
77	GO:0004222: metalloendopeptidase activity	1.58E-02
78	GO:0004177: aminopeptidase activity	1.66E-02
79	GO:0047372: acylglycerol lipase activity	1.66E-02
80	GO:0008378: galactosyltransferase activity	1.83E-02
81	GO:0004089: carbonate dehydratase activity	2.01E-02
82	GO:0031072: heat shock protein binding	2.01E-02
83	GO:0005262: calcium channel activity	2.01E-02
84	GO:0010329: auxin efflux transmembrane transporter activity	2.01E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	2.08E-02
86	GO:0050661: NADP binding	2.08E-02
87	GO:0043424: protein histidine kinase binding	2.96E-02
88	GO:0004176: ATP-dependent peptidase activity	3.16E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	3.59E-02
90	GO:0003756: protein disulfide isomerase activity	3.81E-02
91	GO:0016491: oxidoreductase activity	3.90E-02
92	GO:0004650: polygalacturonase activity	4.11E-02
93	GO:0016853: isomerase activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	6.82E-54
3	GO:0009535: chloroplast thylakoid membrane	6.38E-47
4	GO:0009534: chloroplast thylakoid	6.63E-39
5	GO:0009543: chloroplast thylakoid lumen	3.97E-30
6	GO:0009570: chloroplast stroma	6.95E-26
7	GO:0009579: thylakoid	6.85E-24
8	GO:0009941: chloroplast envelope	1.13E-19
9	GO:0031977: thylakoid lumen	3.82E-19
10	GO:0009654: photosystem II oxygen evolving complex	3.87E-10
11	GO:0030095: chloroplast photosystem II	4.44E-09
12	GO:0019898: extrinsic component of membrane	7.49E-09
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.72E-08
14	GO:0010007: magnesium chelatase complex	1.25E-07
15	GO:0048046: apoplast	1.54E-07
16	GO:0010287: plastoglobule	1.10E-05
17	GO:0005960: glycine cleavage complex	8.09E-05
18	GO:0010319: stromule	1.86E-04
19	GO:0009706: chloroplast inner membrane	4.10E-04
20	GO:0005840: ribosome	4.20E-04
21	GO:0009515: granal stacked thylakoid	5.03E-04
22	GO:0009344: nitrite reductase complex [NAD(P)H]	5.03E-04
23	GO:0009782: photosystem I antenna complex	5.03E-04
24	GO:0009533: chloroplast stromal thylakoid	5.20E-04
25	GO:0005618: cell wall	5.74E-04
26	GO:0009538: photosystem I reaction center	6.48E-04
27	GO:0031969: chloroplast membrane	8.93E-04
28	GO:0030093: chloroplast photosystem I	1.08E-03
29	GO:0031225: anchored component of membrane	1.68E-03
30	GO:0009528: plastid inner membrane	1.77E-03
31	GO:0009505: plant-type cell wall	1.96E-03
32	GO:0030076: light-harvesting complex	2.47E-03
33	GO:0009531: secondary cell wall	2.57E-03
34	GO:0032432: actin filament bundle	2.57E-03
35	GO:0016020: membrane	2.87E-03
36	GO:0042651: thylakoid membrane	3.37E-03
37	GO:0009527: plastid outer membrane	3.46E-03
38	GO:0009522: photosystem I	6.56E-03
39	GO:0009523: photosystem II	7.04E-03
40	GO:0046658: anchored component of plasma membrane	7.30E-03
41	GO:0016021: integral component of membrane	1.01E-02
42	GO:0005811: lipid particle	1.05E-02
43	GO:0030529: intracellular ribonucleoprotein complex	1.10E-02
44	GO:0045298: tubulin complex	1.19E-02
45	GO:0005576: extracellular region	1.49E-02
46	GO:0005884: actin filament	1.66E-02
47	GO:0000311: plastid large ribosomal subunit	1.83E-02
48	GO:0043234: protein complex	2.56E-02
49	GO:0015935: small ribosomal subunit	3.16E-02
50	GO:0009532: plastid stroma	3.16E-02
51	GO:0031410: cytoplasmic vesicle	3.38E-02