co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G39950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000169: activation of MAPK activity involved in osmosensory signaling pathway	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0046292: formaldehyde metabolic process	0.00E+00
4	GO:0002376: immune system process	0.00E+00
5	GO:0006069: ethanol oxidation	0.00E+00
6	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
7	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
8	GO:0006592: ornithine biosynthetic process	0.00E+00
9	GO:0006101: citrate metabolic process	4.48E-06
10	GO:0006102: isocitrate metabolic process	8.86E-06
11	GO:0042742: defense response to bacterium	3.21E-05
12	GO:0001676: long-chain fatty acid metabolic process	3.55E-05
13	GO:0006090: pyruvate metabolic process	1.00E-04
14	GO:0006097: glyoxylate cycle	1.00E-04
15	GO:0043248: proteasome assembly	1.45E-04
16	GO:0006099: tricarboxylic acid cycle	1.77E-04
17	GO:0010150: leaf senescence	3.06E-04
18	GO:0010450: inflorescence meristem growth	3.14E-04
19	GO:0007292: female gamete generation	3.14E-04
20	GO:0006805: xenobiotic metabolic process	3.14E-04
21	GO:1990641: response to iron ion starvation	3.14E-04
22	GO:1990022: RNA polymerase III complex localization to nucleus	3.14E-04
23	GO:0044376: RNA polymerase II complex import to nucleus	3.14E-04
24	GO:0080136: priming of cellular response to stress	3.14E-04
25	GO:0060862: negative regulation of floral organ abscission	3.14E-04
26	GO:0048448: stamen morphogenesis	3.14E-04
27	GO:0006772: thiamine metabolic process	3.14E-04
28	GO:0035266: meristem growth	3.14E-04
29	GO:0006952: defense response	3.74E-04
30	GO:0000302: response to reactive oxygen species	4.24E-04
31	GO:0043069: negative regulation of programmed cell death	6.60E-04
32	GO:1905182: positive regulation of urease activity	6.87E-04
33	GO:0051262: protein tetramerization	6.87E-04
34	GO:0048833: specification of floral organ number	6.87E-04
35	GO:0009812: flavonoid metabolic process	6.87E-04
36	GO:0051788: response to misfolded protein	6.87E-04
37	GO:1902000: homogentisate catabolic process	6.87E-04
38	GO:0031349: positive regulation of defense response	6.87E-04
39	GO:0019441: tryptophan catabolic process to kynurenine	6.87E-04
40	GO:0002221: pattern recognition receptor signaling pathway	6.87E-04
41	GO:0006597: spermine biosynthetic process	6.87E-04
42	GO:0008219: cell death	9.50E-04
43	GO:0006108: malate metabolic process	9.84E-04
44	GO:0006499: N-terminal protein myristoylation	1.07E-03
45	GO:0071494: cellular response to UV-C	1.11E-03
46	GO:0009072: aromatic amino acid family metabolic process	1.11E-03
47	GO:0060968: regulation of gene silencing	1.11E-03
48	GO:1900140: regulation of seedling development	1.11E-03
49	GO:0010359: regulation of anion channel activity	1.11E-03
50	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.11E-03
51	GO:0055074: calcium ion homeostasis	1.11E-03
52	GO:0051176: positive regulation of sulfur metabolic process	1.11E-03
53	GO:0006468: protein phosphorylation	1.14E-03
54	GO:0090351: seedling development	1.24E-03
55	GO:0000162: tryptophan biosynthetic process	1.37E-03
56	GO:0034976: response to endoplasmic reticulum stress	1.37E-03
57	GO:0007231: osmosensory signaling pathway	1.60E-03
58	GO:0072334: UDP-galactose transmembrane transport	1.60E-03
59	GO:0009399: nitrogen fixation	1.60E-03
60	GO:0048194: Golgi vesicle budding	1.60E-03
61	GO:0055114: oxidation-reduction process	1.77E-03
62	GO:0006979: response to oxidative stress	1.89E-03
63	GO:0009408: response to heat	1.96E-03
64	GO:0007166: cell surface receptor signaling pathway	1.98E-03
65	GO:0060548: negative regulation of cell death	2.14E-03
66	GO:0048830: adventitious root development	2.14E-03
67	GO:1902584: positive regulation of response to water deprivation	2.14E-03
68	GO:0033500: carbohydrate homeostasis	2.14E-03
69	GO:0010363: regulation of plant-type hypersensitive response	2.14E-03
70	GO:2000038: regulation of stomatal complex development	2.14E-03
71	GO:0080142: regulation of salicylic acid biosynthetic process	2.14E-03
72	GO:0006542: glutamine biosynthetic process	2.14E-03
73	GO:0006457: protein folding	2.46E-03
74	GO:0030308: negative regulation of cell growth	2.74E-03
75	GO:0045927: positive regulation of growth	2.74E-03
76	GO:0046283: anthocyanin-containing compound metabolic process	2.74E-03
77	GO:0031365: N-terminal protein amino acid modification	2.74E-03
78	GO:0009229: thiamine diphosphate biosynthetic process	2.74E-03
79	GO:0007029: endoplasmic reticulum organization	2.74E-03
80	GO:0042631: cellular response to water deprivation	2.80E-03
81	GO:0006508: proteolysis	3.11E-03
82	GO:0048232: male gamete generation	3.38E-03
83	GO:1902456: regulation of stomatal opening	3.38E-03
84	GO:0009267: cellular response to starvation	3.38E-03
85	GO:1900425: negative regulation of defense response to bacterium	3.38E-03
86	GO:0006596: polyamine biosynthetic process	3.38E-03
87	GO:0006014: D-ribose metabolic process	3.38E-03
88	GO:0035435: phosphate ion transmembrane transport	3.38E-03
89	GO:0009759: indole glucosinolate biosynthetic process	3.38E-03
90	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.38E-03
91	GO:0010942: positive regulation of cell death	3.38E-03
92	GO:0006751: glutathione catabolic process	3.38E-03
93	GO:0048827: phyllome development	3.38E-03
94	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	3.38E-03
95	GO:0009626: plant-type hypersensitive response	3.45E-03
96	GO:0010193: response to ozone	3.72E-03
97	GO:0007264: small GTPase mediated signal transduction	3.97E-03
98	GO:2000067: regulation of root morphogenesis	4.06E-03
99	GO:0015977: carbon fixation	4.06E-03
100	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.06E-03
101	GO:0009612: response to mechanical stimulus	4.06E-03
102	GO:0006694: steroid biosynthetic process	4.06E-03
103	GO:0034389: lipid particle organization	4.06E-03
104	GO:0010555: response to mannitol	4.06E-03
105	GO:2000037: regulation of stomatal complex patterning	4.06E-03
106	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.60E-03
107	GO:0010200: response to chitin	4.60E-03
108	GO:0010286: heat acclimation	4.79E-03
109	GO:0043090: amino acid import	4.80E-03
110	GO:0080186: developmental vegetative growth	4.80E-03
111	GO:0050790: regulation of catalytic activity	4.80E-03
112	GO:0046686: response to cadmium ion	4.89E-03
113	GO:0009555: pollen development	5.37E-03
114	GO:0009615: response to virus	5.37E-03
115	GO:0016559: peroxisome fission	5.57E-03
116	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.57E-03
117	GO:0009819: drought recovery	5.57E-03
118	GO:0010078: maintenance of root meristem identity	5.57E-03
119	GO:1900150: regulation of defense response to fungus	5.57E-03
120	GO:0006002: fructose 6-phosphate metabolic process	6.39E-03
121	GO:0009880: embryonic pattern specification	6.39E-03
122	GO:0010120: camalexin biosynthetic process	6.39E-03
123	GO:0007186: G-protein coupled receptor signaling pathway	6.39E-03
124	GO:0006526: arginine biosynthetic process	6.39E-03
125	GO:0010204: defense response signaling pathway, resistance gene-independent	6.39E-03
126	GO:0030968: endoplasmic reticulum unfolded protein response	6.39E-03
127	GO:0009051: pentose-phosphate shunt, oxidative branch	7.24E-03
128	GO:0009821: alkaloid biosynthetic process	7.24E-03
129	GO:0048268: clathrin coat assembly	8.14E-03
130	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.14E-03
131	GO:0045087: innate immune response	8.90E-03
132	GO:0009299: mRNA transcription	9.07E-03
133	GO:0048829: root cap development	9.07E-03
134	GO:0009641: shade avoidance	9.07E-03
135	GO:0009684: indoleacetic acid biosynthetic process	1.00E-02
136	GO:0010015: root morphogenesis	1.00E-02
137	GO:0072593: reactive oxygen species metabolic process	1.00E-02
138	GO:0043085: positive regulation of catalytic activity	1.00E-02
139	GO:0009682: induced systemic resistance	1.00E-02
140	GO:0052544: defense response by callose deposition in cell wall	1.00E-02
141	GO:0009750: response to fructose	1.00E-02
142	GO:0030148: sphingolipid biosynthetic process	1.00E-02
143	GO:0009617: response to bacterium	1.01E-02
144	GO:0006631: fatty acid metabolic process	1.06E-02
145	GO:0000266: mitochondrial fission	1.11E-02
146	GO:0010102: lateral root morphogenesis	1.21E-02
147	GO:0006807: nitrogen compound metabolic process	1.21E-02
148	GO:0010229: inflorescence development	1.21E-02
149	GO:0009965: leaf morphogenesis	1.29E-02
150	GO:0009933: meristem structural organization	1.32E-02
151	GO:0042343: indole glucosinolate metabolic process	1.43E-02
152	GO:0009901: anther dehiscence	1.43E-02
153	GO:0070588: calcium ion transmembrane transport	1.43E-02
154	GO:0010053: root epidermal cell differentiation	1.43E-02
155	GO:0006071: glycerol metabolic process	1.54E-02
156	GO:0006970: response to osmotic stress	1.55E-02
157	GO:0051603: proteolysis involved in cellular protein catabolic process	1.61E-02
158	GO:2000377: regulation of reactive oxygen species metabolic process	1.66E-02
159	GO:0051260: protein homooligomerization	1.91E-02
160	GO:0098542: defense response to other organism	1.91E-02
161	GO:0046777: protein autophosphorylation	2.02E-02
162	GO:0009620: response to fungus	2.02E-02
163	GO:0016226: iron-sulfur cluster assembly	2.03E-02
164	GO:0030433: ubiquitin-dependent ERAD pathway	2.03E-02
165	GO:0007005: mitochondrion organization	2.03E-02
166	GO:0016569: covalent chromatin modification	2.09E-02
167	GO:0009625: response to insect	2.16E-02
168	GO:0010227: floral organ abscission	2.16E-02
169	GO:0006012: galactose metabolic process	2.16E-02
170	GO:0010091: trichome branching	2.29E-02
171	GO:0019722: calcium-mediated signaling	2.29E-02
172	GO:0045454: cell redox homeostasis	2.33E-02
173	GO:0009651: response to salt stress	2.48E-02
174	GO:0042391: regulation of membrane potential	2.57E-02
175	GO:0034220: ion transmembrane transport	2.57E-02
176	GO:0071472: cellular response to salt stress	2.71E-02
177	GO:0009646: response to absence of light	2.85E-02
178	GO:0048544: recognition of pollen	2.85E-02
179	GO:0006511: ubiquitin-dependent protein catabolic process	2.95E-02
180	GO:0006623: protein targeting to vacuole	3.00E-02
181	GO:0010183: pollen tube guidance	3.00E-02
182	GO:0009749: response to glucose	3.00E-02
183	GO:0019252: starch biosynthetic process	3.00E-02
184	GO:0009790: embryo development	3.24E-02
185	GO:0031047: gene silencing by RNA	3.30E-02
186	GO:0032502: developmental process	3.30E-02
187	GO:0030163: protein catabolic process	3.45E-02
188	GO:0006810: transport	3.48E-02
189	GO:0040008: regulation of growth	3.66E-02
190	GO:0009607: response to biotic stimulus	4.25E-02
191	GO:0006470: protein dephosphorylation	4.37E-02
192	GO:0042128: nitrate assimilation	4.42E-02
193	GO:0006974: cellular response to DNA damage stimulus	4.42E-02
194	GO:0010468: regulation of gene expression	4.56E-02
195	GO:0006950: response to stress	4.59E-02
196	GO:0048481: plant ovule development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
4	GO:0008777: acetylornithine deacetylase activity	0.00E+00
5	GO:0042030: ATPase inhibitor activity	0.00E+00
6	GO:0016504: peptidase activator activity	0.00E+00
7	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
8	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
9	GO:0005524: ATP binding	4.71E-07
10	GO:0003994: aconitate hydratase activity	4.48E-06
11	GO:0004714: transmembrane receptor protein tyrosine kinase activity	8.86E-06
12	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	6.35E-05
13	GO:0004470: malic enzyme activity	6.35E-05
14	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	6.35E-05
15	GO:0102391: decanoate--CoA ligase activity	1.97E-04
16	GO:0004012: phospholipid-translocating ATPase activity	1.97E-04
17	GO:0008235: metalloexopeptidase activity	2.57E-04
18	GO:0004467: long-chain fatty acid-CoA ligase activity	2.57E-04
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.14E-04
20	GO:0015085: calcium ion transmembrane transporter activity	3.14E-04
21	GO:0004112: cyclic-nucleotide phosphodiesterase activity	3.14E-04
22	GO:0051669: fructan beta-fructosidase activity	3.14E-04
23	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	3.14E-04
24	GO:0004788: thiamine diphosphokinase activity	3.14E-04
25	GO:0031219: levanase activity	3.14E-04
26	GO:0016768: spermine synthase activity	3.14E-04
27	GO:0046964: 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	3.14E-04
28	GO:0016491: oxidoreductase activity	3.41E-04
29	GO:0005509: calcium ion binding	4.65E-04
30	GO:0004713: protein tyrosine kinase activity	6.60E-04
31	GO:0004766: spermidine synthase activity	6.87E-04
32	GO:0045140: inositol phosphoceramide synthase activity	6.87E-04
33	GO:0004061: arylformamidase activity	6.87E-04
34	GO:0019172: glyoxalase III activity	6.87E-04
35	GO:0015036: disulfide oxidoreductase activity	6.87E-04
36	GO:0004566: beta-glucuronidase activity	6.87E-04
37	GO:0016301: kinase activity	6.88E-04
38	GO:0051082: unfolded protein binding	7.07E-04
39	GO:0004177: aminopeptidase activity	7.62E-04
40	GO:0004022: alcohol dehydrogenase (NAD) activity	9.84E-04
41	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.84E-04
42	GO:0005093: Rab GDP-dissociation inhibitor activity	1.11E-03
43	GO:0016151: nickel cation binding	1.11E-03
44	GO:0016174: NAD(P)H oxidase activity	1.11E-03
45	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.11E-03
46	GO:0003840: gamma-glutamyltransferase activity	1.11E-03
47	GO:0036374: glutathione hydrolase activity	1.11E-03
48	GO:0031683: G-protein beta/gamma-subunit complex binding	1.11E-03
49	GO:0008964: phosphoenolpyruvate carboxylase activity	1.11E-03
50	GO:0016805: dipeptidase activity	1.11E-03
51	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.11E-03
52	GO:0001664: G-protein coupled receptor binding	1.11E-03
53	GO:0004672: protein kinase activity	1.42E-03
54	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.45E-03
55	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.60E-03
56	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.60E-03
57	GO:0031176: endo-1,4-beta-xylanase activity	1.60E-03
58	GO:0004298: threonine-type endopeptidase activity	1.84E-03
59	GO:0070628: proteasome binding	2.14E-03
60	GO:0003756: protein disulfide isomerase activity	2.39E-03
61	GO:0005459: UDP-galactose transmembrane transporter activity	2.74E-03
62	GO:0008948: oxaloacetate decarboxylase activity	2.74E-03
63	GO:0005496: steroid binding	2.74E-03
64	GO:0004356: glutamate-ammonia ligase activity	2.74E-03
65	GO:0005515: protein binding	2.76E-03
66	GO:0016853: isomerase activity	3.24E-03
67	GO:0005516: calmodulin binding	3.31E-03
68	GO:0036402: proteasome-activating ATPase activity	3.38E-03
69	GO:0004747: ribokinase activity	4.06E-03
70	GO:0004656: procollagen-proline 4-dioxygenase activity	4.06E-03
71	GO:0004674: protein serine/threonine kinase activity	4.23E-03
72	GO:0003872: 6-phosphofructokinase activity	4.80E-03
73	GO:0004034: aldose 1-epimerase activity	5.57E-03
74	GO:0008865: fructokinase activity	5.57E-03
75	GO:0008889: glycerophosphodiester phosphodiesterase activity	7.24E-03
76	GO:0016844: strictosidine synthase activity	8.14E-03
77	GO:0005545: 1-phosphatidylinositol binding	9.07E-03
78	GO:0008047: enzyme activator activity	9.07E-03
79	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.73E-03
80	GO:0005507: copper ion binding	9.94E-03
81	GO:0008794: arsenate reductase (glutaredoxin) activity	1.00E-02
82	GO:0051539: 4 iron, 4 sulfur cluster binding	1.02E-02
83	GO:0005388: calcium-transporting ATPase activity	1.21E-02
84	GO:0005315: inorganic phosphate transmembrane transporter activity	1.21E-02
85	GO:0051287: NAD binding	1.40E-02
86	GO:0030553: cGMP binding	1.43E-02
87	GO:0017025: TBP-class protein binding	1.43E-02
88	GO:0003712: transcription cofactor activity	1.43E-02
89	GO:0004190: aspartic-type endopeptidase activity	1.43E-02
90	GO:0030552: cAMP binding	1.43E-02
91	GO:0043531: ADP binding	1.59E-02
92	GO:0016298: lipase activity	1.61E-02
93	GO:0003954: NADH dehydrogenase activity	1.66E-02
94	GO:0031418: L-ascorbic acid binding	1.66E-02
95	GO:0008234: cysteine-type peptidase activity	1.72E-02
96	GO:0005506: iron ion binding	1.77E-02
97	GO:0043424: protein histidine kinase binding	1.78E-02
98	GO:0005216: ion channel activity	1.78E-02
99	GO:0004707: MAP kinase activity	1.91E-02
100	GO:0033612: receptor serine/threonine kinase binding	1.91E-02
101	GO:0005215: transporter activity	2.16E-02
102	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.56E-02
103	GO:0030551: cyclic nucleotide binding	2.57E-02
104	GO:0005249: voltage-gated potassium channel activity	2.57E-02
105	GO:0030276: clathrin binding	2.71E-02
106	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.85E-02
107	GO:0010181: FMN binding	2.85E-02
108	GO:0030246: carbohydrate binding	2.91E-02
109	GO:0003924: GTPase activity	3.02E-02
110	GO:0019825: oxygen binding	3.16E-02
111	GO:0004197: cysteine-type endopeptidase activity	3.30E-02
112	GO:0015297: antiporter activity	3.66E-02
113	GO:0008483: transaminase activity	3.77E-02
114	GO:0008237: metallopeptidase activity	3.77E-02
115	GO:0020037: heme binding	3.91E-02
116	GO:0016597: amino acid binding	3.92E-02
117	GO:0051213: dioxygenase activity	4.09E-02
118	GO:0015250: water channel activity	4.09E-02
119	GO:0009931: calcium-dependent protein serine/threonine kinase activity	4.42E-02
120	GO:0004683: calmodulin-dependent protein kinase activity	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.25E-07
2	GO:0005783: endoplasmic reticulum	2.06E-06
3	GO:0005829: cytosol	2.65E-05
4	GO:0005774: vacuolar membrane	5.85E-05
5	GO:0005839: proteasome core complex	1.61E-04
6	GO:0000502: proteasome complex	4.10E-04
7	GO:0005789: endoplasmic reticulum membrane	5.11E-04
8	GO:0005777: peroxisome	5.34E-04
9	GO:0031304: intrinsic component of mitochondrial inner membrane	6.87E-04
10	GO:0031314: extrinsic component of mitochondrial inner membrane	6.87E-04
11	GO:0005788: endoplasmic reticulum lumen	7.31E-04
12	GO:0005618: cell wall	8.95E-04
13	GO:0046861: glyoxysomal membrane	1.11E-03
14	GO:0005794: Golgi apparatus	1.89E-03
15	GO:0005773: vacuole	2.11E-03
16	GO:0009898: cytoplasmic side of plasma membrane	2.14E-03
17	GO:0005945: 6-phosphofructokinase complex	2.74E-03
18	GO:0030173: integral component of Golgi membrane	4.06E-03
19	GO:0031597: cytosolic proteasome complex	4.06E-03
20	GO:0005778: peroxisomal membrane	4.79E-03
21	GO:0031595: nuclear proteasome complex	4.80E-03
22	GO:0009514: glyoxysome	6.39E-03
23	GO:0019773: proteasome core complex, alpha-subunit complex	6.39E-03
24	GO:0005811: lipid particle	6.39E-03
25	GO:0008540: proteasome regulatory particle, base subcomplex	8.14E-03
26	GO:0016020: membrane	9.03E-03
27	GO:0017119: Golgi transport complex	9.07E-03
28	GO:0005765: lysosomal membrane	1.00E-02
29	GO:0008541: proteasome regulatory particle, lid subcomplex	1.00E-02
30	GO:0005887: integral component of plasma membrane	1.25E-02
31	GO:0005764: lysosome	1.32E-02
32	GO:0030176: integral component of endoplasmic reticulum membrane	1.43E-02
33	GO:0016021: integral component of membrane	1.57E-02
34	GO:0045271: respiratory chain complex I	1.78E-02
35	GO:0005741: mitochondrial outer membrane	1.91E-02
36	GO:0005905: clathrin-coated pit	1.91E-02
37	GO:0030136: clathrin-coated vesicle	2.43E-02
38	GO:0019898: extrinsic component of membrane	3.00E-02
39	GO:0005802: trans-Golgi network	3.75E-02
40	GO:0030529: intracellular ribonucleoprotein complex	4.09E-02