Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G38510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:2000121: regulation of removal of superoxide radicals0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:0042593: glucose homeostasis0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0006412: translation8.76E-14
8GO:0042254: ribosome biogenesis3.56E-09
9GO:0015979: photosynthesis2.51E-07
10GO:0032544: plastid translation1.00E-05
11GO:0010206: photosystem II repair1.39E-05
12GO:0010027: thylakoid membrane organization4.97E-05
13GO:0010207: photosystem II assembly5.88E-05
14GO:0009658: chloroplast organization8.74E-05
15GO:0042549: photosystem II stabilization1.23E-04
16GO:1904966: positive regulation of vitamin E biosynthetic process2.84E-04
17GO:0000481: maturation of 5S rRNA2.84E-04
18GO:1904964: positive regulation of phytol biosynthetic process2.84E-04
19GO:0042371: vitamin K biosynthetic process2.84E-04
20GO:0034337: RNA folding2.84E-04
21GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.84E-04
22GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.84E-04
23GO:1902326: positive regulation of chlorophyll biosynthetic process6.25E-04
24GO:0034755: iron ion transmembrane transport6.25E-04
25GO:0030388: fructose 1,6-bisphosphate metabolic process6.25E-04
26GO:0010275: NAD(P)H dehydrogenase complex assembly6.25E-04
27GO:0009773: photosynthetic electron transport in photosystem I6.61E-04
28GO:0019684: photosynthesis, light reaction6.61E-04
29GO:0009750: response to fructose6.61E-04
30GO:0018298: protein-chromophore linkage7.94E-04
31GO:0009767: photosynthetic electron transport chain8.57E-04
32GO:0009735: response to cytokinin9.24E-04
33GO:0006000: fructose metabolic process1.01E-03
34GO:0006518: peptide metabolic process1.01E-03
35GO:0045493: xylan catabolic process1.01E-03
36GO:0006636: unsaturated fatty acid biosynthetic process1.19E-03
37GO:0045490: pectin catabolic process1.29E-03
38GO:0080170: hydrogen peroxide transmembrane transport1.45E-03
39GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.45E-03
40GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-03
41GO:2001141: regulation of RNA biosynthetic process1.45E-03
42GO:1902476: chloride transmembrane transport1.45E-03
43GO:0051513: regulation of monopolar cell growth1.45E-03
44GO:0015994: chlorophyll metabolic process1.94E-03
45GO:2000122: negative regulation of stomatal complex development1.94E-03
46GO:0030104: water homeostasis1.94E-03
47GO:0010037: response to carbon dioxide1.94E-03
48GO:0015976: carbon utilization1.94E-03
49GO:0009247: glycolipid biosynthetic process2.48E-03
50GO:0034052: positive regulation of plant-type hypersensitive response2.48E-03
51GO:0006564: L-serine biosynthetic process2.48E-03
52GO:0010236: plastoquinone biosynthetic process2.48E-03
53GO:0009107: lipoate biosynthetic process2.48E-03
54GO:0009409: response to cold2.61E-03
55GO:0009793: embryo development ending in seed dormancy2.96E-03
56GO:0016554: cytidine to uridine editing3.06E-03
57GO:0006655: phosphatidylglycerol biosynthetic process3.06E-03
58GO:0032973: amino acid export3.06E-03
59GO:1902456: regulation of stomatal opening3.06E-03
60GO:0006810: transport3.12E-03
61GO:0042545: cell wall modification3.22E-03
62GO:0042372: phylloquinone biosynthetic process3.68E-03
63GO:1901259: chloroplast rRNA processing3.68E-03
64GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)3.68E-03
65GO:0009955: adaxial/abaxial pattern specification3.68E-03
66GO:0006821: chloride transport4.34E-03
67GO:0050829: defense response to Gram-negative bacterium4.34E-03
68GO:0009645: response to low light intensity stimulus4.34E-03
69GO:0009772: photosynthetic electron transport in photosystem II4.34E-03
70GO:0043090: amino acid import4.34E-03
71GO:0030497: fatty acid elongation4.34E-03
72GO:0042255: ribosome assembly5.03E-03
73GO:0043068: positive regulation of programmed cell death5.03E-03
74GO:0006605: protein targeting5.03E-03
75GO:0019375: galactolipid biosynthetic process5.03E-03
76GO:0032508: DNA duplex unwinding5.03E-03
77GO:0010492: maintenance of shoot apical meristem identity5.03E-03
78GO:0009231: riboflavin biosynthetic process5.03E-03
79GO:0042128: nitrate assimilation5.19E-03
80GO:0009790: embryo development5.42E-03
81GO:0015995: chlorophyll biosynthetic process5.47E-03
82GO:0010411: xyloglucan metabolic process5.47E-03
83GO:0017004: cytochrome complex assembly5.77E-03
84GO:0006002: fructose 6-phosphate metabolic process5.77E-03
85GO:0071482: cellular response to light stimulus5.77E-03
86GO:0009821: alkaloid biosynthetic process6.54E-03
87GO:0048507: meristem development6.54E-03
88GO:0080144: amino acid homeostasis6.54E-03
89GO:0006783: heme biosynthetic process6.54E-03
90GO:0009051: pentose-phosphate shunt, oxidative branch6.54E-03
91GO:1900865: chloroplast RNA modification7.35E-03
92GO:0010205: photoinhibition7.35E-03
93GO:0006779: porphyrin-containing compound biosynthetic process7.35E-03
94GO:0009637: response to blue light7.68E-03
95GO:0006782: protoporphyrinogen IX biosynthetic process8.19E-03
96GO:0009299: mRNA transcription8.19E-03
97GO:0006535: cysteine biosynthetic process from serine8.19E-03
98GO:0009698: phenylpropanoid metabolic process9.06E-03
99GO:0009089: lysine biosynthetic process via diaminopimelate9.06E-03
100GO:0009073: aromatic amino acid family biosynthetic process9.06E-03
101GO:0006879: cellular iron ion homeostasis9.06E-03
102GO:0006352: DNA-templated transcription, initiation9.06E-03
103GO:0000038: very long-chain fatty acid metabolic process9.06E-03
104GO:0010114: response to red light9.92E-03
105GO:0005983: starch catabolic process9.96E-03
106GO:0016024: CDP-diacylglycerol biosynthetic process9.96E-03
107GO:0015706: nitrate transport9.96E-03
108GO:0006006: glucose metabolic process1.09E-02
109GO:0009725: response to hormone1.09E-02
110GO:0006094: gluconeogenesis1.09E-02
111GO:0005986: sucrose biosynthetic process1.09E-02
112GO:0010143: cutin biosynthetic process1.19E-02
113GO:0010167: response to nitrate1.29E-02
114GO:0010030: positive regulation of seed germination1.29E-02
115GO:0010025: wax biosynthetic process1.39E-02
116GO:0000027: ribosomal large subunit assembly1.50E-02
117GO:0005992: trehalose biosynthetic process1.50E-02
118GO:0019344: cysteine biosynthetic process1.50E-02
119GO:0031408: oxylipin biosynthetic process1.72E-02
120GO:0048511: rhythmic process1.72E-02
121GO:0019915: lipid storage1.72E-02
122GO:0061077: chaperone-mediated protein folding1.72E-02
123GO:0009740: gibberellic acid mediated signaling pathway1.80E-02
124GO:0009814: defense response, incompatible interaction1.83E-02
125GO:0035428: hexose transmembrane transport1.83E-02
126GO:0006730: one-carbon metabolic process1.83E-02
127GO:0019748: secondary metabolic process1.83E-02
128GO:0006012: galactose metabolic process1.95E-02
129GO:0009306: protein secretion2.07E-02
130GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.19E-02
131GO:0042335: cuticle development2.31E-02
132GO:0034220: ion transmembrane transport2.31E-02
133GO:0000413: protein peptidyl-prolyl isomerization2.31E-02
134GO:0010087: phloem or xylem histogenesis2.31E-02
135GO:0046323: glucose import2.44E-02
136GO:0042752: regulation of circadian rhythm2.57E-02
137GO:0009749: response to glucose2.70E-02
138GO:0042744: hydrogen peroxide catabolic process2.73E-02
139GO:0002229: defense response to oomycetes2.83E-02
140GO:0000302: response to reactive oxygen species2.83E-02
141GO:0032502: developmental process2.97E-02
142GO:0006633: fatty acid biosynthetic process3.01E-02
143GO:0030163: protein catabolic process3.11E-02
144GO:0006464: cellular protein modification process3.25E-02
145GO:0009567: double fertilization forming a zygote and endosperm3.25E-02
146GO:0016311: dephosphorylation4.29E-02
147GO:0009407: toxin catabolic process4.76E-02
148GO:0010218: response to far red light4.76E-02
149GO:0010119: regulation of stomatal movement4.93E-02
RankGO TermAdjusted P value
1GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
6GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
7GO:0047513: 1,2-alpha-L-fucosidase activity0.00E+00
8GO:0019843: rRNA binding1.27E-23
9GO:0003735: structural constituent of ribosome2.74E-17
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.76E-08
11GO:0005528: FK506 binding6.51E-08
12GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity3.71E-06
13GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.69E-04
14GO:0004655: porphobilinogen synthase activity2.84E-04
15GO:0009671: nitrate:proton symporter activity2.84E-04
16GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water3.44E-04
17GO:0016168: chlorophyll binding6.09E-04
18GO:0008967: phosphoglycolate phosphatase activity6.25E-04
19GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.25E-04
20GO:0017118: lipoyltransferase activity6.25E-04
21GO:0047746: chlorophyllase activity6.25E-04
22GO:0042389: omega-3 fatty acid desaturase activity6.25E-04
23GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.25E-04
24GO:0043425: bHLH transcription factor binding6.25E-04
25GO:0004617: phosphoglycerate dehydrogenase activity6.25E-04
26GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity6.25E-04
27GO:0016415: octanoyltransferase activity6.25E-04
28GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity6.25E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.25E-04
30GO:0050734: hydroxycinnamoyltransferase activity1.01E-03
31GO:0003935: GTP cyclohydrolase II activity1.01E-03
32GO:0031409: pigment binding1.19E-03
33GO:0035250: UDP-galactosyltransferase activity1.45E-03
34GO:0016851: magnesium chelatase activity1.45E-03
35GO:0051537: 2 iron, 2 sulfur cluster binding1.61E-03
36GO:0016987: sigma factor activity1.94E-03
37GO:0043495: protein anchor1.94E-03
38GO:0009044: xylan 1,4-beta-xylosidase activity1.94E-03
39GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.94E-03
40GO:0005253: anion channel activity1.94E-03
41GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.94E-03
42GO:0046556: alpha-L-arabinofuranosidase activity1.94E-03
43GO:0004659: prenyltransferase activity1.94E-03
44GO:0001053: plastid sigma factor activity1.94E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity1.94E-03
46GO:0045330: aspartyl esterase activity2.43E-03
47GO:0008374: O-acyltransferase activity2.48E-03
48GO:0009922: fatty acid elongase activity2.48E-03
49GO:0004130: cytochrome-c peroxidase activity3.06E-03
50GO:0005247: voltage-gated chloride channel activity3.06E-03
51GO:0030599: pectinesterase activity3.10E-03
52GO:0004124: cysteine synthase activity3.68E-03
53GO:0019899: enzyme binding4.34E-03
54GO:0004034: aldose 1-epimerase activity5.03E-03
55GO:0004033: aldo-keto reductase (NADP) activity5.03E-03
56GO:0008236: serine-type peptidase activity5.76E-03
57GO:0005381: iron ion transmembrane transporter activity7.35E-03
58GO:0016844: strictosidine synthase activity7.35E-03
59GO:0015112: nitrate transmembrane transporter activity7.35E-03
60GO:0004864: protein phosphatase inhibitor activity8.19E-03
61GO:0004805: trehalose-phosphatase activity8.19E-03
62GO:0008794: arsenate reductase (glutaredoxin) activity9.06E-03
63GO:0004185: serine-type carboxypeptidase activity9.92E-03
64GO:0004089: carbonate dehydratase activity1.09E-02
65GO:0031072: heat shock protein binding1.09E-02
66GO:0008266: poly(U) RNA binding1.19E-02
67GO:0008146: sulfotransferase activity1.29E-02
68GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.39E-02
69GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.39E-02
70GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.39E-02
71GO:0004707: MAP kinase activity1.72E-02
72GO:0030570: pectate lyase activity1.95E-02
73GO:0022891: substrate-specific transmembrane transporter activity1.95E-02
74GO:0016746: transferase activity, transferring acyl groups1.97E-02
75GO:0003756: protein disulfide isomerase activity2.07E-02
76GO:0003727: single-stranded RNA binding2.07E-02
77GO:0010181: FMN binding2.57E-02
78GO:0005355: glucose transmembrane transporter activity2.57E-02
79GO:0016853: isomerase activity2.57E-02
80GO:0004252: serine-type endopeptidase activity2.66E-02
81GO:0004872: receptor activity2.70E-02
82GO:0016762: xyloglucan:xyloglucosyl transferase activity2.83E-02
83GO:0046910: pectinesterase inhibitor activity3.08E-02
84GO:0016597: amino acid binding3.54E-02
85GO:0015250: water channel activity3.68E-02
86GO:0005509: calcium ion binding3.79E-02
87GO:0016798: hydrolase activity, acting on glycosyl bonds4.13E-02
88GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.29E-02
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.45E-02
90GO:0015238: drug transmembrane transporter activity4.60E-02
91GO:0003723: RNA binding4.70E-02
92GO:0004222: metalloendopeptidase activity4.76E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
3GO:0044391: ribosomal subunit0.00E+00
4GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
5GO:0009507: chloroplast2.13E-54
6GO:0009941: chloroplast envelope2.75E-28
7GO:0009570: chloroplast stroma4.52E-28
8GO:0009535: chloroplast thylakoid membrane6.66E-25
9GO:0009543: chloroplast thylakoid lumen1.47E-18
10GO:0009534: chloroplast thylakoid8.07E-18
11GO:0005840: ribosome2.35E-14
12GO:0009579: thylakoid9.98E-12
13GO:0031977: thylakoid lumen7.46E-10
14GO:0030095: chloroplast photosystem II1.56E-06
15GO:0009654: photosystem II oxygen evolving complex4.20E-06
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.39E-05
17GO:0019898: extrinsic component of membrane2.07E-05
18GO:0000312: plastid small ribosomal subunit5.88E-05
19GO:0016020: membrane1.56E-04
20GO:0009782: photosystem I antenna complex2.84E-04
21GO:0043674: columella2.84E-04
22GO:0009547: plastid ribosome2.84E-04
23GO:0009523: photosystem II3.21E-04
24GO:0009706: chloroplast inner membrane5.66E-04
25GO:0042170: plastid membrane6.25E-04
26GO:0000311: plastid large ribosomal subunit7.56E-04
27GO:0010007: magnesium chelatase complex1.01E-03
28GO:0009509: chromoplast1.01E-03
29GO:0030076: light-harvesting complex1.07E-03
30GO:0042646: plastid nucleoid1.45E-03
31GO:0015935: small ribosomal subunit1.60E-03
32GO:0034707: chloride channel complex3.06E-03
33GO:0031969: chloroplast membrane3.49E-03
34GO:0016363: nuclear matrix3.68E-03
35GO:0022626: cytosolic ribosome3.84E-03
36GO:0009295: nucleoid4.14E-03
37GO:0042807: central vacuole4.34E-03
38GO:0009533: chloroplast stromal thylakoid4.34E-03
39GO:0005763: mitochondrial small ribosomal subunit6.54E-03
40GO:0009705: plant-type vacuole membrane6.71E-03
41GO:0015934: large ribosomal subunit7.01E-03
42GO:0022627: cytosolic small ribosomal subunit9.59E-03
43GO:0032040: small-subunit processome9.96E-03
44GO:0005618: cell wall1.05E-02
45GO:0042651: thylakoid membrane1.60E-02
46GO:0022625: cytosolic large ribosomal subunit1.64E-02
47GO:0009536: plastid2.01E-02
48GO:0009505: plant-type cell wall2.08E-02
49GO:0010287: plastoglobule2.27E-02
50GO:0009522: photosystem I2.57E-02
51GO:0016592: mediator complex2.97E-02
52GO:0071944: cell periphery3.11E-02
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Gene type



Gene DE type