GO Enrichment Analysis of Co-expressed Genes with
AT5G38290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0033231: carbohydrate export | 0.00E+00 |
| 3 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 4 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 5 | GO:0006223: uracil salvage | 0.00E+00 |
| 6 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 7 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 8 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 9 | GO:0006412: translation | 2.70E-13 |
| 10 | GO:0032544: plastid translation | 3.93E-10 |
| 11 | GO:0006783: heme biosynthetic process | 7.23E-10 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 1.18E-09 |
| 13 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.07E-09 |
| 14 | GO:0042254: ribosome biogenesis | 1.61E-08 |
| 15 | GO:0006779: porphyrin-containing compound biosynthetic process | 1.14E-05 |
| 16 | GO:0010027: thylakoid membrane organization | 2.79E-05 |
| 17 | GO:0015979: photosynthesis | 9.87E-05 |
| 18 | GO:0009735: response to cytokinin | 1.02E-04 |
| 19 | GO:0042372: phylloquinone biosynthetic process | 1.23E-04 |
| 20 | GO:0010444: guard mother cell differentiation | 1.62E-04 |
| 21 | GO:0015755: fructose transport | 2.32E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.32E-04 |
| 23 | GO:0010442: guard cell morphogenesis | 2.32E-04 |
| 24 | GO:1904964: positive regulation of phytol biosynthetic process | 2.32E-04 |
| 25 | GO:0042371: vitamin K biosynthetic process | 2.32E-04 |
| 26 | GO:1902334: fructose export from vacuole to cytoplasm | 2.32E-04 |
| 27 | GO:0009932: cell tip growth | 2.55E-04 |
| 28 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.15E-04 |
| 29 | GO:0070981: L-asparagine biosynthetic process | 5.15E-04 |
| 30 | GO:0006529: asparagine biosynthetic process | 5.15E-04 |
| 31 | GO:0006568: tryptophan metabolic process | 5.15E-04 |
| 32 | GO:2000123: positive regulation of stomatal complex development | 5.15E-04 |
| 33 | GO:0052541: plant-type cell wall cellulose metabolic process | 5.15E-04 |
| 34 | GO:0015714: phosphoenolpyruvate transport | 8.37E-04 |
| 35 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 8.37E-04 |
| 36 | GO:0006954: inflammatory response | 8.37E-04 |
| 37 | GO:0006518: peptide metabolic process | 8.37E-04 |
| 38 | GO:0006760: folic acid-containing compound metabolic process | 8.37E-04 |
| 39 | GO:0006241: CTP biosynthetic process | 1.19E-03 |
| 40 | GO:0006165: nucleoside diphosphate phosphorylation | 1.19E-03 |
| 41 | GO:0006228: UTP biosynthetic process | 1.19E-03 |
| 42 | GO:0033014: tetrapyrrole biosynthetic process | 1.19E-03 |
| 43 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.19E-03 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 1.19E-03 |
| 45 | GO:0009306: protein secretion | 1.55E-03 |
| 46 | GO:0006183: GTP biosynthetic process | 1.59E-03 |
| 47 | GO:0015713: phosphoglycerate transport | 1.59E-03 |
| 48 | GO:0044206: UMP salvage | 1.59E-03 |
| 49 | GO:2000038: regulation of stomatal complex development | 1.59E-03 |
| 50 | GO:0046656: folic acid biosynthetic process | 1.59E-03 |
| 51 | GO:0006021: inositol biosynthetic process | 1.59E-03 |
| 52 | GO:0009658: chloroplast organization | 1.60E-03 |
| 53 | GO:0042335: cuticle development | 1.81E-03 |
| 54 | GO:0010375: stomatal complex patterning | 2.03E-03 |
| 55 | GO:0009247: glycolipid biosynthetic process | 2.03E-03 |
| 56 | GO:0043097: pyrimidine nucleoside salvage | 2.03E-03 |
| 57 | GO:0010236: plastoquinone biosynthetic process | 2.03E-03 |
| 58 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.03E-03 |
| 59 | GO:0016123: xanthophyll biosynthetic process | 2.03E-03 |
| 60 | GO:0009646: response to absence of light | 2.09E-03 |
| 61 | GO:0006206: pyrimidine nucleobase metabolic process | 2.50E-03 |
| 62 | GO:0007035: vacuolar acidification | 2.50E-03 |
| 63 | GO:0032973: amino acid export | 2.50E-03 |
| 64 | GO:0046855: inositol phosphate dephosphorylation | 2.50E-03 |
| 65 | GO:0009117: nucleotide metabolic process | 2.50E-03 |
| 66 | GO:0009972: cytidine deamination | 2.50E-03 |
| 67 | GO:0010583: response to cyclopentenone | 2.56E-03 |
| 68 | GO:0032502: developmental process | 2.56E-03 |
| 69 | GO:0045454: cell redox homeostasis | 2.91E-03 |
| 70 | GO:1901259: chloroplast rRNA processing | 3.00E-03 |
| 71 | GO:0017148: negative regulation of translation | 3.00E-03 |
| 72 | GO:0046654: tetrahydrofolate biosynthetic process | 3.00E-03 |
| 73 | GO:0009854: oxidative photosynthetic carbon pathway | 3.00E-03 |
| 74 | GO:0009955: adaxial/abaxial pattern specification | 3.00E-03 |
| 75 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 3.54E-03 |
| 76 | GO:0009610: response to symbiotic fungus | 3.54E-03 |
| 77 | GO:0009772: photosynthetic electron transport in photosystem II | 3.54E-03 |
| 78 | GO:0043090: amino acid import | 3.54E-03 |
| 79 | GO:0006633: fatty acid biosynthetic process | 4.07E-03 |
| 80 | GO:0008610: lipid biosynthetic process | 4.10E-03 |
| 81 | GO:0009690: cytokinin metabolic process | 4.10E-03 |
| 82 | GO:0006605: protein targeting | 4.10E-03 |
| 83 | GO:0019375: galactolipid biosynthetic process | 4.10E-03 |
| 84 | GO:0007155: cell adhesion | 4.10E-03 |
| 85 | GO:0009657: plastid organization | 4.70E-03 |
| 86 | GO:0071482: cellular response to light stimulus | 4.70E-03 |
| 87 | GO:0009245: lipid A biosynthetic process | 5.32E-03 |
| 88 | GO:0080144: amino acid homeostasis | 5.32E-03 |
| 89 | GO:0010205: photoinhibition | 5.97E-03 |
| 90 | GO:0006995: cellular response to nitrogen starvation | 6.65E-03 |
| 91 | GO:0006535: cysteine biosynthetic process from serine | 6.65E-03 |
| 92 | GO:0006415: translational termination | 7.35E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 7.35E-03 |
| 94 | GO:0006352: DNA-templated transcription, initiation | 7.35E-03 |
| 95 | GO:0009750: response to fructose | 7.35E-03 |
| 96 | GO:0048765: root hair cell differentiation | 7.35E-03 |
| 97 | GO:0000038: very long-chain fatty acid metabolic process | 7.35E-03 |
| 98 | GO:0051707: response to other organism | 7.36E-03 |
| 99 | GO:0006790: sulfur compound metabolic process | 8.08E-03 |
| 100 | GO:0050826: response to freezing | 8.84E-03 |
| 101 | GO:0009725: response to hormone | 8.84E-03 |
| 102 | GO:0009767: photosynthetic electron transport chain | 8.84E-03 |
| 103 | GO:0006541: glutamine metabolic process | 9.62E-03 |
| 104 | GO:0010207: photosystem II assembly | 9.62E-03 |
| 105 | GO:0019853: L-ascorbic acid biosynthetic process | 1.04E-02 |
| 106 | GO:0046854: phosphatidylinositol phosphorylation | 1.04E-02 |
| 107 | GO:0010053: root epidermal cell differentiation | 1.04E-02 |
| 108 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.13E-02 |
| 109 | GO:0006071: glycerol metabolic process | 1.13E-02 |
| 110 | GO:0019762: glucosinolate catabolic process | 1.13E-02 |
| 111 | GO:0000027: ribosomal large subunit assembly | 1.21E-02 |
| 112 | GO:0006487: protein N-linked glycosylation | 1.21E-02 |
| 113 | GO:0019344: cysteine biosynthetic process | 1.21E-02 |
| 114 | GO:0009116: nucleoside metabolic process | 1.21E-02 |
| 115 | GO:0010026: trichome differentiation | 1.30E-02 |
| 116 | GO:0031408: oxylipin biosynthetic process | 1.39E-02 |
| 117 | GO:0015992: proton transport | 1.39E-02 |
| 118 | GO:0051260: protein homooligomerization | 1.39E-02 |
| 119 | GO:0061077: chaperone-mediated protein folding | 1.39E-02 |
| 120 | GO:0009411: response to UV | 1.57E-02 |
| 121 | GO:0042127: regulation of cell proliferation | 1.67E-02 |
| 122 | GO:0070417: cellular response to cold | 1.77E-02 |
| 123 | GO:0016117: carotenoid biosynthetic process | 1.77E-02 |
| 124 | GO:0006662: glycerol ether metabolic process | 1.97E-02 |
| 125 | GO:0009741: response to brassinosteroid | 1.97E-02 |
| 126 | GO:0009790: embryo development | 2.08E-02 |
| 127 | GO:0009791: post-embryonic development | 2.18E-02 |
| 128 | GO:0040008: regulation of growth | 2.34E-02 |
| 129 | GO:1901657: glycosyl compound metabolic process | 2.51E-02 |
| 130 | GO:0009567: double fertilization forming a zygote and endosperm | 2.62E-02 |
| 131 | GO:0007267: cell-cell signaling | 2.74E-02 |
| 132 | GO:0009627: systemic acquired resistance | 3.22E-02 |
| 133 | GO:0018298: protein-chromophore linkage | 3.59E-02 |
| 134 | GO:0000160: phosphorelay signal transduction system | 3.72E-02 |
| 135 | GO:0009860: pollen tube growth | 4.08E-02 |
| 136 | GO:0009637: response to blue light | 4.25E-02 |
| 137 | GO:0009853: photorespiration | 4.25E-02 |
| 138 | GO:0034599: cellular response to oxidative stress | 4.39E-02 |
| 139 | GO:0042542: response to hydrogen peroxide | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 2 | GO:0004853: uroporphyrinogen decarboxylase activity | 0.00E+00 |
| 3 | GO:0008887: glycerate kinase activity | 0.00E+00 |
| 4 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 5 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 6 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 7 | GO:0015038: glutathione disulfide oxidoreductase activity | 0.00E+00 |
| 8 | GO:0015284: fructose uniporter activity | 0.00E+00 |
| 9 | GO:0005048: signal sequence binding | 0.00E+00 |
| 10 | GO:0003735: structural constituent of ribosome | 2.69E-15 |
| 11 | GO:0019843: rRNA binding | 1.61E-11 |
| 12 | GO:0043495: protein anchor | 3.78E-05 |
| 13 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 2.32E-04 |
| 14 | GO:0004655: porphobilinogen synthase activity | 2.32E-04 |
| 15 | GO:0004071: aspartate-ammonia ligase activity | 2.32E-04 |
| 16 | GO:0009374: biotin binding | 2.32E-04 |
| 17 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.32E-04 |
| 18 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.32E-04 |
| 19 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.32E-04 |
| 20 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 2.32E-04 |
| 21 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 2.32E-04 |
| 22 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.33E-04 |
| 23 | GO:0015035: protein disulfide oxidoreductase activity | 3.73E-04 |
| 24 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.97E-04 |
| 25 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.15E-04 |
| 26 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.15E-04 |
| 27 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 5.15E-04 |
| 28 | GO:0004150: dihydroneopterin aldolase activity | 5.15E-04 |
| 29 | GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity | 5.15E-04 |
| 30 | GO:0005353: fructose transmembrane transporter activity | 5.15E-04 |
| 31 | GO:0010291: carotene beta-ring hydroxylase activity | 5.15E-04 |
| 32 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 5.15E-04 |
| 33 | GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity | 5.15E-04 |
| 34 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.15E-04 |
| 35 | GO:0051119: sugar transmembrane transporter activity | 8.11E-04 |
| 36 | GO:0004148: dihydrolipoyl dehydrogenase activity | 8.37E-04 |
| 37 | GO:0005528: FK506 binding | 9.95E-04 |
| 38 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.12E-03 |
| 39 | GO:0035529: NADH pyrophosphatase activity | 1.19E-03 |
| 40 | GO:0035250: UDP-galactosyltransferase activity | 1.19E-03 |
| 41 | GO:0016149: translation release factor activity, codon specific | 1.19E-03 |
| 42 | GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | 1.19E-03 |
| 43 | GO:0004550: nucleoside diphosphate kinase activity | 1.19E-03 |
| 44 | GO:0043023: ribosomal large subunit binding | 1.19E-03 |
| 45 | GO:0008097: 5S rRNA binding | 1.19E-03 |
| 46 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.22E-03 |
| 47 | GO:0016987: sigma factor activity | 1.59E-03 |
| 48 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.59E-03 |
| 49 | GO:0004659: prenyltransferase activity | 1.59E-03 |
| 50 | GO:0001053: plastid sigma factor activity | 1.59E-03 |
| 51 | GO:0004845: uracil phosphoribosyltransferase activity | 1.59E-03 |
| 52 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.03E-03 |
| 53 | GO:0004040: amidase activity | 2.03E-03 |
| 54 | GO:0003989: acetyl-CoA carboxylase activity | 2.03E-03 |
| 55 | GO:0010181: FMN binding | 2.09E-03 |
| 56 | GO:0031177: phosphopantetheine binding | 2.50E-03 |
| 57 | GO:0016208: AMP binding | 2.50E-03 |
| 58 | GO:0016462: pyrophosphatase activity | 2.50E-03 |
| 59 | GO:0004126: cytidine deaminase activity | 3.00E-03 |
| 60 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.00E-03 |
| 61 | GO:0051753: mannan synthase activity | 3.00E-03 |
| 62 | GO:0004849: uridine kinase activity | 3.00E-03 |
| 63 | GO:0000035: acyl binding | 3.00E-03 |
| 64 | GO:0004124: cysteine synthase activity | 3.00E-03 |
| 65 | GO:0019899: enzyme binding | 3.54E-03 |
| 66 | GO:0102483: scopolin beta-glucosidase activity | 4.07E-03 |
| 67 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.10E-03 |
| 68 | GO:0008312: 7S RNA binding | 4.10E-03 |
| 69 | GO:0016491: oxidoreductase activity | 4.23E-03 |
| 70 | GO:0009055: electron carrier activity | 4.46E-03 |
| 71 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.70E-03 |
| 72 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.32E-03 |
| 73 | GO:0003747: translation release factor activity | 5.32E-03 |
| 74 | GO:0008422: beta-glucosidase activity | 6.23E-03 |
| 75 | GO:0008047: enzyme activator activity | 6.65E-03 |
| 76 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 7.35E-03 |
| 77 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.13E-02 |
| 78 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.13E-02 |
| 79 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.13E-02 |
| 80 | GO:0022891: substrate-specific transmembrane transporter activity | 1.57E-02 |
| 81 | GO:0005507: copper ion binding | 1.63E-02 |
| 82 | GO:0047134: protein-disulfide reductase activity | 1.77E-02 |
| 83 | GO:0030170: pyridoxal phosphate binding | 1.97E-02 |
| 84 | GO:0004791: thioredoxin-disulfide reductase activity | 2.07E-02 |
| 85 | GO:0019901: protein kinase binding | 2.18E-02 |
| 86 | GO:0015297: antiporter activity | 2.34E-02 |
| 87 | GO:0000156: phosphorelay response regulator activity | 2.51E-02 |
| 88 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.51E-02 |
| 89 | GO:0008483: transaminase activity | 2.74E-02 |
| 90 | GO:0016597: amino acid binding | 2.86E-02 |
| 91 | GO:0016168: chlorophyll binding | 3.10E-02 |
| 92 | GO:0008375: acetylglucosaminyltransferase activity | 3.22E-02 |
| 93 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.59E-02 |
| 94 | GO:0004222: metalloendopeptidase activity | 3.85E-02 |
| 95 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 9.04E-44 |
| 3 | GO:0009570: chloroplast stroma | 2.92E-42 |
| 4 | GO:0009941: chloroplast envelope | 4.93E-27 |
| 5 | GO:0005840: ribosome | 1.57E-15 |
| 6 | GO:0009579: thylakoid | 3.71E-15 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 8.31E-15 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.73E-10 |
| 9 | GO:0031977: thylakoid lumen | 8.24E-09 |
| 10 | GO:0009654: photosystem II oxygen evolving complex | 2.21E-06 |
| 11 | GO:0000311: plastid large ribosomal subunit | 2.45E-05 |
| 12 | GO:0031969: chloroplast membrane | 7.13E-05 |
| 13 | GO:0009534: chloroplast thylakoid | 2.10E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 2.16E-04 |
| 15 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 2.32E-04 |
| 16 | GO:0009536: plastid | 3.06E-04 |
| 17 | GO:0031225: anchored component of membrane | 3.87E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 5.15E-04 |
| 19 | GO:0015934: large ribosomal subunit | 6.58E-04 |
| 20 | GO:0000312: plastid small ribosomal subunit | 7.26E-04 |
| 21 | GO:0009509: chromoplast | 8.37E-04 |
| 22 | GO:0033281: TAT protein transport complex | 8.37E-04 |
| 23 | GO:0009317: acetyl-CoA carboxylase complex | 8.37E-04 |
| 24 | GO:0009505: plant-type cell wall | 1.14E-03 |
| 25 | GO:0042646: plastid nucleoid | 1.19E-03 |
| 26 | GO:0015935: small ribosomal subunit | 1.20E-03 |
| 27 | GO:0046658: anchored component of plasma membrane | 1.26E-03 |
| 28 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 2.03E-03 |
| 29 | GO:0016363: nuclear matrix | 3.00E-03 |
| 30 | GO:0009295: nucleoid | 3.08E-03 |
| 31 | GO:0048046: apoplast | 4.23E-03 |
| 32 | GO:0009539: photosystem II reaction center | 4.70E-03 |
| 33 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 4.70E-03 |
| 34 | GO:0005763: mitochondrial small ribosomal subunit | 5.32E-03 |
| 35 | GO:0030095: chloroplast photosystem II | 9.62E-03 |
| 36 | GO:0043234: protein complex | 1.13E-02 |
| 37 | GO:0042651: thylakoid membrane | 1.30E-02 |
| 38 | GO:0009523: photosystem II | 2.18E-02 |
| 39 | GO:0005778: peroxisomal membrane | 2.74E-02 |
| 40 | GO:0022627: cytosolic small ribosomal subunit | 3.25E-02 |
| 41 | GO:0022625: cytosolic large ribosomal subunit | 4.93E-02 |